Wall clock time and date at job start Wed Apr 1 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47244 * 2 1 4 4 C 1.46507 * 119.99921 * 273.84756 * 3 2 1 5 5 C 1.50701 * 109.47249 * 262.38179 * 4 3 2 6 6 H 1.08005 * 119.99683 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99688 * 179.97438 * 5 4 3 8 8 N 1.31504 * 120.00231 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99577 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47255 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47209 * 120.00324 * 9 7 5 12 12 H 1.48494 * 109.46873 * 240.00281 * 9 7 5 13 13 C 1.34784 * 120.00267 * 93.85431 * 3 2 1 14 14 O 1.21358 * 119.99753 * 1.68007 * 13 3 2 15 15 C 1.49348 * 120.00021 * 181.40884 * 13 3 2 16 16 O 1.21383 * 120.00373 * 356.11072 * 15 13 3 17 17 N 1.34774 * 120.00003 * 176.10740 * 15 13 3 18 18 C 1.39730 * 120.00071 * 183.41105 * 17 15 13 19 19 C 1.38951 * 120.07611 * 331.63763 * 18 17 15 20 20 C 1.38068 * 119.92303 * 179.97438 * 19 18 17 21 21 C 1.38321 * 120.07942 * 0.02562 * 20 19 18 22 22 C 1.38267 * 120.14621 * 359.97438 * 21 20 19 23 23 C 1.38122 * 120.08389 * 359.74672 * 22 21 20 24 24 C 1.50694 * 120.04218 * 180.25719 * 23 22 21 25 25 C 1.53001 * 109.46739 * 265.25225 * 24 23 22 26 26 N 1.46903 * 109.46870 * 180.02562 * 25 24 23 27 27 C 1.46898 * 111.00139 * 169.99846 * 26 25 24 28 28 C 1.46899 * 110.99893 * 293.95249 * 26 25 24 29 29 H 1.09004 * 109.47688 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47301 * 300.00241 * 1 2 3 31 31 H 1.09001 * 109.47150 * 59.99848 * 1 2 3 32 32 H 1.08999 * 109.46844 * 239.99754 * 2 1 3 33 33 H 1.09001 * 109.47150 * 120.00152 * 2 1 3 34 34 H 1.09000 * 109.46935 * 22.38835 * 4 3 2 35 35 H 1.09001 * 109.47067 * 142.38571 * 4 3 2 36 36 H 0.96998 * 120.00298 * 179.97438 * 8 7 5 37 37 H 0.97000 * 120.00190 * 3.41384 * 17 15 13 38 38 H 1.07999 * 120.03847 * 359.95335 * 19 18 17 39 39 H 1.08000 * 119.96110 * 179.97438 * 20 19 18 40 40 H 1.07990 * 119.92435 * 179.97438 * 21 20 19 41 41 H 1.08007 * 119.95639 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.47251 * 25.25224 * 24 23 22 43 43 H 1.09005 * 109.47010 * 145.25425 * 24 23 22 44 44 H 1.09003 * 109.47026 * 299.99740 * 25 24 23 45 45 H 1.08996 * 109.47756 * 60.00268 * 25 24 23 46 46 H 1.09000 * 109.47182 * 60.00298 * 27 26 25 47 47 H 1.09000 * 109.47423 * 180.02562 * 27 26 25 48 48 H 1.09000 * 109.47250 * 299.99868 * 27 26 25 49 49 H 1.09001 * 109.46998 * 60.00060 * 28 26 25 50 50 H 1.09005 * 109.47346 * 179.97438 * 28 26 25 51 51 H 1.08997 * 109.47217 * 300.00206 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1822 2.1001 -1.2659 5 6 3.6235 2.0300 -1.7006 6 1 4.3451 1.5022 -1.0946 7 6 4.0206 2.6386 -2.8722 8 7 3.1417 3.2808 -3.6102 9 14 5.8070 2.5510 -3.4113 10 1 6.5876 1.7757 -2.4139 11 1 5.8925 1.8823 -4.7344 12 1 6.3608 3.9250 -3.5144 13 6 2.3169 1.9904 1.1646 14 8 2.2104 1.3849 2.2109 15 6 2.7848 3.4087 1.1669 16 8 2.9638 3.9905 0.1167 17 7 3.0082 4.0427 2.3350 18 6 3.3770 5.3905 2.3390 19 6 4.0699 5.9261 1.2603 20 6 4.4323 7.2583 1.2674 21 6 4.1067 8.0596 2.3468 22 6 3.4172 7.5299 3.4219 23 6 3.0465 6.1993 3.4190 24 6 2.2900 5.6244 4.5886 25 6 3.2747 4.9756 5.5635 26 7 2.5371 4.4146 6.7034 27 6 3.4127 3.5815 7.5384 28 6 1.9079 5.4778 7.4980 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5503 1.6434 -2.0276 35 1 1.8936 3.1426 -1.1317 36 1 3.4211 3.7094 -4.4343 37 1 2.9130 3.5635 3.1729 38 1 4.3251 5.3009 0.4174 39 1 4.9713 7.6751 0.4294 40 1 4.3918 9.1012 2.3499 41 1 3.1643 8.1584 4.2630 42 1 1.7469 6.4209 5.0970 43 1 1.5845 4.8740 4.2315 44 1 3.8178 4.1789 5.0551 45 1 3.9801 5.7258 5.9206 46 1 4.2357 4.1867 7.9184 47 1 2.8414 3.1783 8.3746 48 1 3.8106 2.7608 6.9415 49 1 1.2117 6.0358 6.8718 50 1 1.3681 5.0349 8.3351 51 1 2.6764 6.1518 7.8765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275713017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:00 Heat of formation + Delta-G solvation = -38.827651 kcal Electronic energy + Delta-G solvation = -31635.660145 eV Core-core repulsion = 27535.129672 eV Total energy + Delta-G solvation = -4100.530473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18145 -40.68422 -39.23702 -38.34310 -37.38526 -35.71888 -34.69917 -33.92903 -32.06190 -30.90370 -29.66613 -29.02625 -28.44201 -26.50260 -25.49968 -25.01095 -24.20004 -22.88988 -22.25073 -21.60277 -20.63864 -19.09663 -18.53972 -18.33668 -17.65294 -17.07494 -16.90680 -16.74055 -16.43146 -16.25993 -15.92799 -15.80154 -15.62224 -15.22741 -14.99835 -14.66994 -14.49867 -14.34123 -14.20344 -13.97030 -13.81788 -13.63639 -13.44697 -13.21539 -13.15615 -12.89746 -12.78127 -12.71027 -12.65547 -12.43994 -12.41817 -12.29499 -12.04924 -12.01636 -11.79720 -11.73188 -11.68845 -11.40123 -10.64960 -10.11335 -9.70376 -9.61846 -9.29607 -9.04280 -8.15526 -6.24490 0.08538 0.44489 0.72986 1.36077 1.38039 1.42188 1.48920 2.20750 2.39333 2.61687 2.82407 3.04342 3.17931 3.37756 3.84773 3.90785 4.05689 4.13969 4.22394 4.26936 4.33524 4.33778 4.46738 4.50217 4.51115 4.51815 4.57883 4.63652 4.73189 4.74926 4.75230 4.91810 4.93981 5.00392 5.02585 5.04430 5.07278 5.21743 5.23696 5.29962 5.38089 5.46853 5.51272 5.60771 5.68256 5.75652 6.05655 6.08430 6.09579 6.13645 6.14836 6.30334 6.76652 6.81805 7.07382 7.41744 8.92848 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.003704 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.514013 B = 7556.661911 C = 9516.582249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.564 5.564 4 C 0.244 3.756 5 C -0.521 4.521 6 H 0.043 0.957 7 C 0.023 3.977 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.273 1.273 11 H -0.273 1.273 12 H -0.282 1.282 13 C 0.504 3.496 14 O -0.560 6.560 15 C 0.486 3.514 16 O -0.469 6.469 17 N -0.641 5.641 18 C 0.135 3.865 19 C -0.155 4.155 20 C -0.112 4.112 21 C -0.129 4.129 22 C -0.092 4.092 23 C -0.110 4.110 24 C -0.070 4.070 25 C 0.064 3.936 26 N -0.564 5.564 27 C 0.023 3.977 28 C 0.020 3.980 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.021 0.979 35 H 0.048 0.952 36 H 0.264 0.736 37 H 0.422 0.578 38 H 0.114 0.886 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.031 0.969 47 H 0.079 0.921 48 H 0.062 0.938 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 6.539 19.898 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.294 5.294 4 C 0.124 3.876 5 C -0.560 4.560 6 H 0.061 0.939 7 C -0.176 4.176 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.198 1.198 11 H -0.198 1.198 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.441 6.441 15 C 0.268 3.732 16 O -0.340 6.340 17 N -0.289 5.289 18 C 0.040 3.960 19 C -0.175 4.175 20 C -0.131 4.131 21 C -0.148 4.148 22 C -0.111 4.111 23 C -0.113 4.113 24 C -0.107 4.107 25 C -0.064 4.064 26 N -0.288 5.288 27 C -0.125 4.125 28 C -0.128 4.128 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.261 0.739 38 H 0.132 0.868 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.177 0.823 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.049 0.951 47 H 0.097 0.903 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.906 6.321 19.260 20.360 hybrid contribution 1.608 0.033 -0.392 1.655 sum -0.298 6.353 18.867 19.910 Atomic orbital electron populations 1.22036 0.93970 1.03640 1.01512 1.21704 0.95755 0.81034 1.03513 1.48299 1.59383 1.14641 1.07052 1.19544 0.96229 0.92976 0.78882 1.21397 0.94453 1.33655 1.06494 0.93902 1.25512 1.01016 0.94595 0.96491 1.70019 1.35405 1.35659 1.14790 0.85630 0.80725 0.77748 0.78265 1.19799 1.19830 1.20812 1.19878 0.79630 0.87410 0.84486 1.90638 1.55639 1.66552 1.31310 1.20497 0.79925 0.88435 0.84365 1.90910 1.45760 1.66569 1.30748 1.43127 1.66588 1.09896 1.09283 1.17857 0.98076 0.83120 0.96922 1.21518 0.99414 0.97581 0.99014 1.21258 0.99663 0.92632 0.99540 1.21445 0.99300 1.00944 0.93088 1.21190 0.97363 0.93254 0.99258 1.19756 1.01714 0.94139 0.95659 1.20490 0.96943 1.00818 0.92488 1.22051 0.94770 0.97930 0.91658 1.61956 1.33494 1.23136 1.10237 1.22407 0.95578 0.97056 0.97432 1.22502 0.99062 0.93366 0.97873 0.88547 0.93307 0.93058 0.89733 0.89789 0.96091 0.93443 0.92743 0.73863 0.86782 0.85173 0.82853 0.82327 0.88302 0.91705 0.92310 0.93513 0.95069 0.90253 0.91952 0.90626 0.90674 0.94926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 10.24 71.98 0.74 -3.81 16 2 C 0.10 3.62 6.15 86.38 0.53 4.15 16 3 N -0.56 -24.86 2.48 -827.85 -2.05 -26.91 16 4 C 0.24 12.63 4.79 85.63 0.41 13.04 16 5 C -0.52 -29.23 8.09 25.60 0.21 -29.02 16 6 H 0.04 2.45 7.81 -2.91 -0.02 2.42 16 7 C 0.02 1.33 5.46 84.66 0.46 1.79 16 8 N -0.92 -54.32 13.28 21.45 0.28 -54.04 16 9 Si 0.95 45.00 29.54 68.60 2.03 47.02 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 C 0.50 21.93 7.66 87.24 0.67 22.60 16 14 O -0.56 -23.77 15.99 -3.27 -0.05 -23.82 16 15 C 0.49 21.04 7.62 87.24 0.66 21.70 16 16 O -0.47 -23.51 9.32 -3.35 -0.03 -23.55 16 17 N -0.64 -22.64 4.90 -304.83 -1.49 -24.13 16 18 C 0.13 4.43 6.39 38.21 0.24 4.67 16 19 C -0.15 -5.64 8.75 22.40 0.20 -5.44 16 20 C -0.11 -3.24 10.04 22.25 0.22 -3.01 16 21 C -0.13 -2.79 10.04 22.30 0.22 -2.57 16 22 C -0.09 -1.86 9.68 22.25 0.22 -1.64 16 23 C -0.11 -2.71 5.15 -19.73 -0.10 -2.81 16 24 C -0.07 -1.42 4.65 29.85 0.14 -1.28 16 25 C 0.06 1.25 4.86 86.30 0.42 1.67 16 26 N -0.56 -10.43 5.02 -948.84 -4.76 -15.20 16 27 C 0.02 0.38 9.57 127.69 1.22 1.60 16 28 C 0.02 0.27 9.32 127.69 1.19 1.46 16 29 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 33 H 0.08 2.88 7.29 -2.39 -0.02 2.86 16 34 H 0.02 1.12 8.01 -2.39 -0.02 1.10 16 35 H 0.05 2.72 5.57 -2.39 -0.01 2.71 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.42 13.42 6.32 -92.71 -0.59 12.83 16 38 H 0.11 5.11 5.75 -2.91 -0.02 5.09 16 39 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 40 H 0.15 2.26 8.06 -2.92 -0.02 2.24 16 41 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.10 1.56 6.47 -2.39 -0.02 1.55 16 43 H 0.06 1.57 7.33 -2.38 -0.02 1.55 16 44 H 0.06 1.32 7.30 -2.39 -0.02 1.31 16 45 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16 46 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 48 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 49 H 0.08 0.96 6.47 -2.39 -0.02 0.94 16 50 H 0.07 0.90 8.12 -2.38 -0.02 0.88 16 51 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -68.93 412.40 1.91 -67.01 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.35 Total: 30.53 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 7.65 Total: 23.08 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -8.03 Total: -120.28 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.08 Total: -47.37 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -68.93 1.91 -67.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275713017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.186 kcal (2) G-P(sol) polarization free energy of solvation -68.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds