Wall clock time and date at job start Wed Apr 1 2020 05:33:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 N 1.46493 * 109.47244 * 2 1
4 4 C 1.46507 * 119.99921 * 273.84756 * 3 2 1
5 5 C 1.50701 * 109.47249 * 262.38179 * 4 3 2
6 6 H 1.08005 * 119.99683 * 0.02562 * 5 4 3
7 7 C 1.37876 * 119.99688 * 179.97438 * 5 4 3
8 8 N 1.31504 * 120.00231 * 0.02562 * 7 5 4
9 9 Si 1.86804 * 119.99577 * 180.02562 * 7 5 4
10 10 H 1.48506 * 109.47255 * 0.02562 * 9 7 5
11 11 H 1.48499 * 109.47209 * 120.00324 * 9 7 5
12 12 H 1.48494 * 109.46873 * 240.00281 * 9 7 5
13 13 C 1.34784 * 120.00267 * 93.85431 * 3 2 1
14 14 O 1.21358 * 119.99753 * 1.68007 * 13 3 2
15 15 C 1.49348 * 120.00021 * 181.40884 * 13 3 2
16 16 O 1.21383 * 120.00373 * 356.11072 * 15 13 3
17 17 N 1.34774 * 120.00003 * 176.10740 * 15 13 3
18 18 C 1.39730 * 120.00071 * 183.41105 * 17 15 13
19 19 C 1.38951 * 120.07611 * 331.63763 * 18 17 15
20 20 C 1.38068 * 119.92303 * 179.97438 * 19 18 17
21 21 C 1.38321 * 120.07942 * 0.02562 * 20 19 18
22 22 C 1.38267 * 120.14621 * 359.97438 * 21 20 19
23 23 C 1.38122 * 120.08389 * 359.74672 * 22 21 20
24 24 C 1.50694 * 120.04218 * 180.25719 * 23 22 21
25 25 C 1.53001 * 109.46739 * 265.25225 * 24 23 22
26 26 N 1.46903 * 109.46870 * 180.02562 * 25 24 23
27 27 C 1.46898 * 111.00139 * 169.99846 * 26 25 24
28 28 C 1.46899 * 110.99893 * 293.95249 * 26 25 24
29 29 H 1.09004 * 109.47688 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.47301 * 300.00241 * 1 2 3
31 31 H 1.09001 * 109.47150 * 59.99848 * 1 2 3
32 32 H 1.08999 * 109.46844 * 239.99754 * 2 1 3
33 33 H 1.09001 * 109.47150 * 120.00152 * 2 1 3
34 34 H 1.09000 * 109.46935 * 22.38835 * 4 3 2
35 35 H 1.09001 * 109.47067 * 142.38571 * 4 3 2
36 36 H 0.96998 * 120.00298 * 179.97438 * 8 7 5
37 37 H 0.97000 * 120.00190 * 3.41384 * 17 15 13
38 38 H 1.07999 * 120.03847 * 359.95335 * 19 18 17
39 39 H 1.08000 * 119.96110 * 179.97438 * 20 19 18
40 40 H 1.07990 * 119.92435 * 179.97438 * 21 20 19
41 41 H 1.08007 * 119.95639 * 180.02562 * 22 21 20
42 42 H 1.08996 * 109.47251 * 25.25224 * 24 23 22
43 43 H 1.09005 * 109.47010 * 145.25425 * 24 23 22
44 44 H 1.09003 * 109.47026 * 299.99740 * 25 24 23
45 45 H 1.08996 * 109.47756 * 60.00268 * 25 24 23
46 46 H 1.09000 * 109.47182 * 60.00298 * 27 26 25
47 47 H 1.09000 * 109.47423 * 180.02562 * 27 26 25
48 48 H 1.09000 * 109.47250 * 299.99868 * 27 26 25
49 49 H 1.09001 * 109.46998 * 60.00060 * 28 26 25
50 50 H 1.09005 * 109.47346 * 179.97438 * 28 26 25
51 51 H 1.08997 * 109.47217 * 300.00206 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3811 0.0000
4 6 2.1822 2.1001 -1.2659
5 6 3.6235 2.0300 -1.7006
6 1 4.3451 1.5022 -1.0946
7 6 4.0206 2.6386 -2.8722
8 7 3.1417 3.2808 -3.6102
9 14 5.8070 2.5510 -3.4113
10 1 6.5876 1.7757 -2.4139
11 1 5.8925 1.8823 -4.7344
12 1 6.3608 3.9250 -3.5144
13 6 2.3169 1.9904 1.1646
14 8 2.2104 1.3849 2.2109
15 6 2.7848 3.4087 1.1669
16 8 2.9638 3.9905 0.1167
17 7 3.0082 4.0427 2.3350
18 6 3.3770 5.3905 2.3390
19 6 4.0699 5.9261 1.2603
20 6 4.4323 7.2583 1.2674
21 6 4.1067 8.0596 2.3468
22 6 3.4172 7.5299 3.4219
23 6 3.0465 6.1993 3.4190
24 6 2.2900 5.6244 4.5886
25 6 3.2747 4.9756 5.5635
26 7 2.5371 4.4146 6.7034
27 6 3.4127 3.5815 7.5384
28 6 1.9079 5.4778 7.4980
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.8932 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.5503 1.6434 -2.0276
35 1 1.8936 3.1426 -1.1317
36 1 3.4211 3.7094 -4.4343
37 1 2.9130 3.5635 3.1729
38 1 4.3251 5.3009 0.4174
39 1 4.9713 7.6751 0.4294
40 1 4.3918 9.1012 2.3499
41 1 3.1643 8.1584 4.2630
42 1 1.7469 6.4209 5.0970
43 1 1.5845 4.8740 4.2315
44 1 3.8178 4.1789 5.0551
45 1 3.9801 5.7258 5.9206
46 1 4.2357 4.1867 7.9184
47 1 2.8414 3.1783 8.3746
48 1 3.8106 2.7608 6.9415
49 1 1.2117 6.0358 6.8718
50 1 1.3681 5.0349 8.3351
51 1 2.6764 6.1518 7.8765
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000275713017.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:33:00
Heat of formation + Delta-G solvation = -38.827651 kcal
Electronic energy + Delta-G solvation = -31635.660145 eV
Core-core repulsion = 27535.129672 eV
Total energy + Delta-G solvation = -4100.530473 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-42.18145 -40.68422 -39.23702 -38.34310 -37.38526 -35.71888 -34.69917 -33.92903
-32.06190 -30.90370 -29.66613 -29.02625 -28.44201 -26.50260 -25.49968 -25.01095
-24.20004 -22.88988 -22.25073 -21.60277 -20.63864 -19.09663 -18.53972 -18.33668
-17.65294 -17.07494 -16.90680 -16.74055 -16.43146 -16.25993 -15.92799 -15.80154
-15.62224 -15.22741 -14.99835 -14.66994 -14.49867 -14.34123 -14.20344 -13.97030
-13.81788 -13.63639 -13.44697 -13.21539 -13.15615 -12.89746 -12.78127 -12.71027
-12.65547 -12.43994 -12.41817 -12.29499 -12.04924 -12.01636 -11.79720 -11.73188
-11.68845 -11.40123 -10.64960 -10.11335 -9.70376 -9.61846 -9.29607 -9.04280
-8.15526 -6.24490 0.08538 0.44489 0.72986 1.36077 1.38039 1.42188
1.48920 2.20750 2.39333 2.61687 2.82407 3.04342 3.17931 3.37756
3.84773 3.90785 4.05689 4.13969 4.22394 4.26936 4.33524 4.33778
4.46738 4.50217 4.51115 4.51815 4.57883 4.63652 4.73189 4.74926
4.75230 4.91810 4.93981 5.00392 5.02585 5.04430 5.07278 5.21743
5.23696 5.29962 5.38089 5.46853 5.51272 5.60771 5.68256 5.75652
6.05655 6.08430 6.09579 6.13645 6.14836 6.30334 6.76652 6.81805
7.07382 7.41744 8.92848
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009779 B = 0.003704 C = 0.002942
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2862.514013 B = 7556.661911 C = 9516.582249
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.101 3.899
3 N -0.564 5.564
4 C 0.244 3.756
5 C -0.521 4.521
6 H 0.043 0.957
7 C 0.023 3.977
8 N -0.919 5.919
9 Si 0.950 3.050
10 H -0.273 1.273
11 H -0.273 1.273
12 H -0.282 1.282
13 C 0.504 3.496
14 O -0.560 6.560
15 C 0.486 3.514
16 O -0.469 6.469
17 N -0.641 5.641
18 C 0.135 3.865
19 C -0.155 4.155
20 C -0.112 4.112
21 C -0.129 4.129
22 C -0.092 4.092
23 C -0.110 4.110
24 C -0.070 4.070
25 C 0.064 3.936
26 N -0.564 5.564
27 C 0.023 3.977
28 C 0.020 3.980
29 H 0.096 0.904
30 H 0.048 0.952
31 H 0.050 0.950
32 H 0.084 0.916
33 H 0.084 0.916
34 H 0.021 0.979
35 H 0.048 0.952
36 H 0.264 0.736
37 H 0.422 0.578
38 H 0.114 0.886
39 H 0.130 0.870
40 H 0.154 0.846
41 H 0.159 0.841
42 H 0.099 0.901
43 H 0.064 0.936
44 H 0.058 0.942
45 H 0.047 0.953
46 H 0.031 0.969
47 H 0.079 0.921
48 H 0.062 0.938
49 H 0.075 0.925
50 H 0.074 0.926
51 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.538 6.539 19.898 21.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.020 4.020
3 N -0.294 5.294
4 C 0.124 3.876
5 C -0.560 4.560
6 H 0.061 0.939
7 C -0.176 4.176
8 N -0.559 5.559
9 Si 0.776 3.224
10 H -0.198 1.198
11 H -0.198 1.198
12 H -0.208 1.208
13 C 0.286 3.714
14 O -0.441 6.441
15 C 0.268 3.732
16 O -0.340 6.340
17 N -0.289 5.289
18 C 0.040 3.960
19 C -0.175 4.175
20 C -0.131 4.131
21 C -0.148 4.148
22 C -0.111 4.111
23 C -0.113 4.113
24 C -0.107 4.107
25 C -0.064 4.064
26 N -0.288 5.288
27 C -0.125 4.125
28 C -0.128 4.128
29 H 0.115 0.885
30 H 0.067 0.933
31 H 0.069 0.931
32 H 0.103 0.897
33 H 0.102 0.898
34 H 0.039 0.961
35 H 0.066 0.934
36 H 0.073 0.927
37 H 0.261 0.739
38 H 0.132 0.868
39 H 0.148 0.852
40 H 0.171 0.829
41 H 0.177 0.823
42 H 0.117 0.883
43 H 0.083 0.917
44 H 0.077 0.923
45 H 0.065 0.935
46 H 0.049 0.951
47 H 0.097 0.903
48 H 0.080 0.920
49 H 0.094 0.906
50 H 0.093 0.907
51 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -1.906 6.321 19.260 20.360
hybrid contribution 1.608 0.033 -0.392 1.655
sum -0.298 6.353 18.867 19.910
Atomic orbital electron populations
1.22036 0.93970 1.03640 1.01512 1.21704 0.95755 0.81034 1.03513
1.48299 1.59383 1.14641 1.07052 1.19544 0.96229 0.92976 0.78882
1.21397 0.94453 1.33655 1.06494 0.93902 1.25512 1.01016 0.94595
0.96491 1.70019 1.35405 1.35659 1.14790 0.85630 0.80725 0.77748
0.78265 1.19799 1.19830 1.20812 1.19878 0.79630 0.87410 0.84486
1.90638 1.55639 1.66552 1.31310 1.20497 0.79925 0.88435 0.84365
1.90910 1.45760 1.66569 1.30748 1.43127 1.66588 1.09896 1.09283
1.17857 0.98076 0.83120 0.96922 1.21518 0.99414 0.97581 0.99014
1.21258 0.99663 0.92632 0.99540 1.21445 0.99300 1.00944 0.93088
1.21190 0.97363 0.93254 0.99258 1.19756 1.01714 0.94139 0.95659
1.20490 0.96943 1.00818 0.92488 1.22051 0.94770 0.97930 0.91658
1.61956 1.33494 1.23136 1.10237 1.22407 0.95578 0.97056 0.97432
1.22502 0.99062 0.93366 0.97873 0.88547 0.93307 0.93058 0.89733
0.89789 0.96091 0.93443 0.92743 0.73863 0.86782 0.85173 0.82853
0.82327 0.88302 0.91705 0.92310 0.93513 0.95069 0.90253 0.91952
0.90626 0.90674 0.94926
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.55 10.24 71.98 0.74 -3.81 16
2 C 0.10 3.62 6.15 86.38 0.53 4.15 16
3 N -0.56 -24.86 2.48 -827.85 -2.05 -26.91 16
4 C 0.24 12.63 4.79 85.63 0.41 13.04 16
5 C -0.52 -29.23 8.09 25.60 0.21 -29.02 16
6 H 0.04 2.45 7.81 -2.91 -0.02 2.42 16
7 C 0.02 1.33 5.46 84.66 0.46 1.79 16
8 N -0.92 -54.32 13.28 21.45 0.28 -54.04 16
9 Si 0.95 45.00 29.54 68.60 2.03 47.02 16
10 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16
11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16
12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16
13 C 0.50 21.93 7.66 87.24 0.67 22.60 16
14 O -0.56 -23.77 15.99 -3.27 -0.05 -23.82 16
15 C 0.49 21.04 7.62 87.24 0.66 21.70 16
16 O -0.47 -23.51 9.32 -3.35 -0.03 -23.55 16
17 N -0.64 -22.64 4.90 -304.83 -1.49 -24.13 16
18 C 0.13 4.43 6.39 38.21 0.24 4.67 16
19 C -0.15 -5.64 8.75 22.40 0.20 -5.44 16
20 C -0.11 -3.24 10.04 22.25 0.22 -3.01 16
21 C -0.13 -2.79 10.04 22.30 0.22 -2.57 16
22 C -0.09 -1.86 9.68 22.25 0.22 -1.64 16
23 C -0.11 -2.71 5.15 -19.73 -0.10 -2.81 16
24 C -0.07 -1.42 4.65 29.85 0.14 -1.28 16
25 C 0.06 1.25 4.86 86.30 0.42 1.67 16
26 N -0.56 -10.43 5.02 -948.84 -4.76 -15.20 16
27 C 0.02 0.38 9.57 127.69 1.22 1.60 16
28 C 0.02 0.27 9.32 127.69 1.19 1.46 16
29 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16
30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
32 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16
33 H 0.08 2.88 7.29 -2.39 -0.02 2.86 16
34 H 0.02 1.12 8.01 -2.39 -0.02 1.10 16
35 H 0.05 2.72 5.57 -2.39 -0.01 2.71 16
36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16
37 H 0.42 13.42 6.32 -92.71 -0.59 12.83 16
38 H 0.11 5.11 5.75 -2.91 -0.02 5.09 16
39 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16
40 H 0.15 2.26 8.06 -2.92 -0.02 2.24 16
41 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16
42 H 0.10 1.56 6.47 -2.39 -0.02 1.55 16
43 H 0.06 1.57 7.33 -2.38 -0.02 1.55 16
44 H 0.06 1.32 7.30 -2.39 -0.02 1.31 16
45 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16
46 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16
47 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16
48 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16
49 H 0.08 0.96 6.47 -2.39 -0.02 0.94 16
50 H 0.07 0.90 8.12 -2.38 -0.02 0.88 16
51 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16
Total: -1.00 -68.93 412.40 1.91 -67.01
By element:
Atomic # 1 Polarization: 30.18 SS G_CDS: 0.35 Total: 30.53 kcal
Atomic # 6 Polarization: 15.43 SS G_CDS: 7.65 Total: 23.08 kcal
Atomic # 7 Polarization: -112.25 SS G_CDS: -8.03 Total: -120.28 kcal
Atomic # 8 Polarization: -47.28 SS G_CDS: -0.08 Total: -47.37 kcal
Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal
Total: -68.93 1.91 -67.01 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000275713017.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.186 kcal
(2) G-P(sol) polarization free energy of solvation -68.928 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.742 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.013 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds