Wall clock time and date at job start Wed Apr 1 2020 05:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47088 * 2 1 4 4 C 1.46508 * 119.99570 * 269.99962 * 3 2 1 5 5 C 1.50700 * 109.46644 * 269.99754 * 4 3 2 6 6 H 1.07995 * 120.00365 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00018 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99853 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00372 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46654 * 90.00054 * 9 7 5 11 11 H 1.48492 * 109.47487 * 210.00500 * 9 7 5 12 12 H 1.48504 * 109.47091 * 330.00630 * 9 7 5 13 13 C 1.34777 * 120.00511 * 89.99570 * 3 2 1 14 14 O 1.21280 * 119.99797 * 179.97438 * 13 3 2 15 15 C 1.50693 * 119.99639 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47146 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99638 * 72.78016 * 16 15 13 18 18 C 1.46895 * 111.00387 * 196.73473 * 16 15 13 19 19 H 1.09002 * 109.47108 * 304.11763 * 18 16 15 20 20 C 1.53001 * 109.47177 * 64.11457 * 18 16 15 21 21 C 1.50690 * 109.47249 * 187.03056 * 20 18 16 22 22 N 1.34778 * 120.00196 * 186.99350 * 21 20 18 23 23 O 1.21281 * 120.00273 * 7.00004 * 21 20 18 24 24 C 1.50700 * 109.47118 * 184.11698 * 18 16 15 25 25 C 1.38233 * 119.99948 * 319.72725 * 24 18 16 26 26 C 1.38237 * 119.99811 * 179.81752 * 25 24 18 27 27 C 1.38231 * 120.00353 * 0.38922 * 26 25 24 28 28 C 1.38241 * 119.99545 * 359.86298 * 27 26 25 29 29 C 1.38229 * 120.00019 * 359.95381 * 28 27 26 30 30 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47302 * 300.00621 * 1 2 3 32 32 H 1.09001 * 109.46663 * 60.00159 * 1 2 3 33 33 H 1.08997 * 109.47302 * 239.99379 * 2 1 3 34 34 H 1.09004 * 109.46638 * 119.99067 * 2 1 3 35 35 H 1.08995 * 109.47268 * 29.99736 * 4 3 2 36 36 H 1.08994 * 109.46910 * 150.00243 * 4 3 2 37 37 H 0.96998 * 120.00298 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.47734 * 60.00159 * 15 13 3 39 39 H 1.09001 * 109.47186 * 299.99522 * 15 13 3 40 40 H 1.09006 * 109.46857 * 183.95826 * 17 16 15 41 41 H 1.08997 * 109.47384 * 303.95588 * 17 16 15 42 42 H 1.09001 * 109.46890 * 63.95571 * 17 16 15 43 43 H 1.08997 * 109.46903 * 67.02897 * 20 18 16 44 44 H 1.08995 * 109.46893 * 307.03555 * 20 18 16 45 45 H 0.96998 * 120.00153 * 180.02562 * 22 21 20 46 46 H 0.97001 * 119.99951 * 359.72920 * 22 21 20 47 47 H 1.07997 * 120.00147 * 359.97438 * 25 24 18 48 48 H 1.07998 * 119.99814 * 180.23375 * 26 25 24 49 49 H 1.07996 * 120.00225 * 179.84191 * 27 26 25 50 50 H 1.07998 * 119.99917 * 179.97438 * 28 27 26 51 51 H 1.08004 * 120.00111 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2689 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2302 -1.0961 7 6 4.1492 2.3894 -2.8780 8 7 3.3493 3.1254 -3.6183 9 14 5.9136 2.0965 -3.4169 10 1 5.9776 0.8750 -4.2590 11 1 6.3923 3.2636 -4.2003 12 1 6.7737 1.9178 -2.2195 13 6 2.2429 2.0167 1.1671 14 8 2.6476 3.1600 1.1670 15 6 1.9922 1.3062 2.4722 16 7 2.3108 2.2061 3.5888 17 6 1.2927 3.2562 3.7255 18 6 2.4649 1.4558 4.8422 19 1 1.5621 0.8750 5.0313 20 6 3.6638 0.5121 4.7277 21 6 3.7195 -0.3788 5.9417 22 7 4.7737 -1.1974 6.1291 23 8 2.8156 -0.3594 6.7502 24 6 2.6902 2.4186 5.9795 25 6 3.5041 3.5215 5.8004 26 6 3.7077 4.4067 6.8425 27 6 3.1040 4.1846 8.0661 28 6 2.2943 3.0788 8.2467 29 6 2.0876 2.1957 7.2035 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.5818 1.6876 -2.0285 36 1 2.0956 3.1409 -1.1385 37 1 3.6753 3.5158 -4.4442 38 1 2.6228 0.4189 2.5299 39 1 0.9444 1.0117 2.5301 40 1 1.5887 3.9489 4.5133 41 1 1.1988 3.7962 2.7833 42 1 0.3351 2.8027 3.9813 43 1 4.5815 1.0968 4.6637 44 1 3.5599 -0.1002 3.8320 45 1 4.8093 -1.7712 6.9104 46 1 5.4947 -1.2159 5.4805 47 1 3.9788 3.6930 4.8457 48 1 4.3405 5.2704 6.7015 49 1 3.2651 4.8748 8.8809 50 1 1.8229 2.9050 9.2027 51 1 1.4554 1.3316 7.3447 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280592326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:21 Heat of formation + Delta-G solvation = -33.672610 kcal Electronic energy + Delta-G solvation = -31614.977906 eV Core-core repulsion = 27514.670972 eV Total energy + Delta-G solvation = -4100.306934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.47753 -39.15488 -38.81651 -36.80873 -35.16523 -33.86460 -32.83671 -32.20243 -30.79705 -30.08220 -30.05494 -28.44846 -26.49604 -25.42155 -23.34570 -22.98873 -22.53788 -21.86022 -21.19105 -19.78866 -18.33920 -17.61730 -17.19809 -16.96669 -16.41660 -16.13693 -15.78604 -15.45004 -15.35347 -14.91668 -14.69223 -14.48337 -14.21161 -14.08557 -13.66023 -13.42231 -13.28673 -13.14822 -13.00289 -12.73963 -12.63186 -12.44001 -12.16439 -11.99422 -11.67349 -11.64571 -11.46457 -11.24964 -11.14738 -10.90840 -10.87184 -10.77707 -10.68034 -10.49720 -10.11150 -10.08494 -9.90258 -9.60636 -8.89415 -8.77652 -8.64022 -8.42287 -8.15066 -7.61059 -6.02841 -4.07254 1.37946 1.51439 2.47603 3.21198 3.30011 3.36991 3.40147 3.49161 3.68592 3.88723 4.24268 4.46664 4.55452 4.68339 4.97181 5.01550 5.03584 5.06829 5.17980 5.21852 5.31118 5.32156 5.35509 5.38774 5.58064 5.59120 5.63993 5.65561 5.70814 5.75545 5.78438 5.85937 6.02260 6.04789 6.17351 6.22409 6.30286 6.46787 6.51042 6.55719 6.60399 6.69963 6.94892 7.07848 7.08729 7.14955 7.18771 7.47599 7.59189 7.94226 8.06939 8.25858 8.47642 8.93240 9.17993 9.57900 11.05212 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.002845 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.364422 B = 9837.820709 C =10062.351683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.249 3.751 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.508 3.492 14 O -0.521 6.521 15 C 0.031 3.969 16 N -0.514 5.514 17 C 0.026 3.974 18 C 0.141 3.859 19 H 0.059 0.941 20 C -0.139 4.139 21 C 0.521 3.479 22 N -0.858 5.858 23 O -0.539 6.539 24 C -0.082 4.082 25 C -0.092 4.092 26 C -0.133 4.133 27 C -0.121 4.121 28 C -0.134 4.134 29 C -0.086 4.086 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.018 0.982 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.399 0.601 46 H 0.402 0.598 47 H 0.134 0.866 48 H 0.119 0.881 49 H 0.115 0.885 50 H 0.116 0.884 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.629 -7.746 20.635 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.396 6.396 15 C -0.100 4.100 16 N -0.238 5.238 17 C -0.122 4.122 18 C 0.032 3.968 19 H 0.077 0.923 20 C -0.179 4.179 21 C 0.306 3.694 22 N -0.422 5.422 23 O -0.415 6.415 24 C -0.082 4.082 25 C -0.110 4.110 26 C -0.151 4.151 27 C -0.139 4.139 28 C -0.152 4.152 29 C -0.105 4.105 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.037 0.963 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.230 0.770 46 H 0.231 0.769 47 H 0.152 0.848 48 H 0.137 0.863 49 H 0.133 0.867 50 H 0.134 0.866 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.651 -6.618 20.733 21.827 hybrid contribution 0.674 -0.953 -0.279 1.200 sum -0.977 -7.571 20.454 21.832 Atomic orbital electron populations 1.22228 0.96936 1.01339 1.02275 1.21381 0.93411 0.84456 1.02438 1.48266 1.64272 1.13167 1.07714 1.19226 0.96143 0.93594 0.78093 1.21432 0.96963 1.31735 1.06103 0.92507 1.24934 0.97767 0.94978 0.96462 1.69929 1.35682 1.33516 1.14330 0.86515 0.84821 0.77619 0.78562 1.20740 1.21137 1.19890 1.20070 0.78921 0.87166 0.84543 1.90660 1.44421 1.17747 1.86772 1.22188 1.00559 0.96123 0.91138 1.61559 1.47885 1.12584 1.01801 1.22495 0.91124 0.94649 1.03918 1.20217 0.96650 0.92034 0.87880 0.92305 1.21777 1.01718 0.97817 0.96619 1.20590 0.81519 0.79919 0.87350 1.43891 1.24197 1.44866 1.29244 1.90704 1.37389 1.67368 1.46077 1.19588 0.98418 0.95994 0.94237 1.21206 0.97134 0.93484 0.99199 1.21143 1.00769 0.99815 0.93380 1.21125 0.97792 0.97695 0.97337 1.21075 0.99887 0.95344 0.98906 1.21156 0.98836 0.98236 0.92240 0.92251 0.93229 0.91992 0.89973 0.92091 0.95201 0.93973 0.92769 0.88648 0.92324 0.90911 0.89741 0.96336 0.87690 0.87995 0.77021 0.76950 0.84795 0.86331 0.86696 0.86632 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.21 2.46 -175.06 -0.43 -12.64 16 4 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 5 C -0.52 -14.57 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.51 10.13 7.38 -10.99 -0.08 10.04 16 14 O -0.52 -12.67 14.49 5.56 0.08 -12.59 16 15 C 0.03 0.45 3.89 -4.98 -0.02 0.43 16 16 N -0.51 -7.36 3.63 -237.72 -0.86 -8.23 16 17 C 0.03 0.38 8.70 60.07 0.52 0.90 16 18 C 0.14 1.73 1.46 -68.87 -0.10 1.62 16 19 H 0.06 0.75 7.63 -51.93 -0.40 0.36 16 20 C -0.14 -1.43 5.21 -27.89 -0.15 -1.57 16 21 C 0.52 5.33 7.78 -10.99 -0.09 5.24 16 22 N -0.86 -5.68 8.87 31.22 0.28 -5.41 16 23 O -0.54 -7.14 13.73 5.56 0.08 -7.07 16 24 C -0.08 -1.03 3.33 -104.63 -0.35 -1.38 16 25 C -0.09 -1.17 7.71 -39.58 -0.31 -1.48 16 26 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 27 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 28 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 29 C -0.09 -1.07 8.19 -39.59 -0.32 -1.40 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.62 7.22 -51.93 -0.38 0.25 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 34 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 35 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.10 1.18 4.98 -51.93 -0.26 0.92 16 39 H 0.06 0.77 7.09 -51.93 -0.37 0.40 16 40 H 0.07 1.03 5.77 -51.93 -0.30 0.73 16 41 H 0.08 1.45 6.45 -51.93 -0.33 1.11 16 42 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 44 H 0.10 0.93 5.94 -51.93 -0.31 0.62 16 45 H 0.40 2.25 8.93 -40.82 -0.36 1.88 16 46 H 0.40 1.71 8.83 -40.82 -0.36 1.35 16 47 H 0.13 1.84 7.73 -52.49 -0.41 1.44 16 48 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.11 0.99 8.06 -52.49 -0.42 0.56 16 50 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 51 H 0.13 1.64 6.85 -52.48 -0.36 1.28 16 LS Contribution 407.56 15.07 6.14 6.14 Total: -1.00 -34.79 407.56 -9.06 -43.86 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.89 Total: 5.34 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.17 Total: -0.29 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.28 Total: -51.98 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.16 Total: -19.66 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.79 -9.06 -43.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280592326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.186 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds