Wall clock time and date at job start Wed Apr 1 2020 05:31:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46500 * 109.47088 * 2 1
4 4 C 1.46508 * 119.99570 * 269.99962 * 3 2 1
5 5 C 1.50700 * 109.46644 * 269.99754 * 4 3 2
6 6 H 1.07995 * 120.00365 * 0.02562 * 5 4 3
7 7 C 1.37882 * 120.00018 * 179.97438 * 5 4 3
8 8 N 1.31511 * 119.99853 * 0.02562 * 7 5 4
9 9 Si 1.86797 * 120.00372 * 179.97438 * 7 5 4
10 10 H 1.48506 * 109.46654 * 90.00054 * 9 7 5
11 11 H 1.48492 * 109.47487 * 210.00500 * 9 7 5
12 12 H 1.48504 * 109.47091 * 330.00630 * 9 7 5
13 13 C 1.34777 * 120.00511 * 89.99570 * 3 2 1
14 14 O 1.21280 * 119.99797 * 179.97438 * 13 3 2
15 15 C 1.50693 * 119.99639 * 0.02562 * 13 3 2
16 16 N 1.46904 * 109.47146 * 179.97438 * 15 13 3
17 17 C 1.46906 * 110.99638 * 72.78016 * 16 15 13
18 18 C 1.46895 * 111.00387 * 196.73473 * 16 15 13
19 19 H 1.09002 * 109.47108 * 304.11763 * 18 16 15
20 20 C 1.53001 * 109.47177 * 64.11457 * 18 16 15
21 21 C 1.50690 * 109.47249 * 187.03056 * 20 18 16
22 22 N 1.34778 * 120.00196 * 186.99350 * 21 20 18
23 23 O 1.21281 * 120.00273 * 7.00004 * 21 20 18
24 24 C 1.50700 * 109.47118 * 184.11698 * 18 16 15
25 25 C 1.38233 * 119.99948 * 319.72725 * 24 18 16
26 26 C 1.38237 * 119.99811 * 179.81752 * 25 24 18
27 27 C 1.38231 * 120.00353 * 0.38922 * 26 25 24
28 28 C 1.38241 * 119.99545 * 359.86298 * 27 26 25
29 29 C 1.38229 * 120.00019 * 359.95381 * 28 27 26
30 30 H 1.09000 * 109.46968 * 180.02562 * 1 2 3
31 31 H 1.08997 * 109.47302 * 300.00621 * 1 2 3
32 32 H 1.09001 * 109.46663 * 60.00159 * 1 2 3
33 33 H 1.08997 * 109.47302 * 239.99379 * 2 1 3
34 34 H 1.09004 * 109.46638 * 119.99067 * 2 1 3
35 35 H 1.08995 * 109.47268 * 29.99736 * 4 3 2
36 36 H 1.08994 * 109.46910 * 150.00243 * 4 3 2
37 37 H 0.96998 * 120.00298 * 179.97438 * 8 7 5
38 38 H 1.09003 * 109.47734 * 60.00159 * 15 13 3
39 39 H 1.09001 * 109.47186 * 299.99522 * 15 13 3
40 40 H 1.09006 * 109.46857 * 183.95826 * 17 16 15
41 41 H 1.08997 * 109.47384 * 303.95588 * 17 16 15
42 42 H 1.09001 * 109.46890 * 63.95571 * 17 16 15
43 43 H 1.08997 * 109.46903 * 67.02897 * 20 18 16
44 44 H 1.08995 * 109.46893 * 307.03555 * 20 18 16
45 45 H 0.96998 * 120.00153 * 180.02562 * 22 21 20
46 46 H 0.97001 * 119.99951 * 359.72920 * 22 21 20
47 47 H 1.07997 * 120.00147 * 359.97438 * 25 24 18
48 48 H 1.07998 * 119.99814 * 180.23375 * 26 25 24
49 49 H 1.07996 * 120.00225 * 179.84191 * 27 26 25
50 50 H 1.07998 * 119.99917 * 179.97438 * 28 27 26
51 51 H 1.08004 * 120.00111 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2625 2.0718 -1.2689
5 6 3.6858 1.8349 -1.7038
6 1 4.3426 1.2302 -1.0961
7 6 4.1492 2.3894 -2.8780
8 7 3.3493 3.1254 -3.6183
9 14 5.9136 2.0965 -3.4169
10 1 5.9776 0.8750 -4.2590
11 1 6.3923 3.2636 -4.2003
12 1 6.7737 1.9178 -2.2195
13 6 2.2429 2.0167 1.1671
14 8 2.6476 3.1600 1.1670
15 6 1.9922 1.3062 2.4722
16 7 2.3108 2.2061 3.5888
17 6 1.2927 3.2562 3.7255
18 6 2.4649 1.4558 4.8422
19 1 1.5621 0.8750 5.0313
20 6 3.6638 0.5121 4.7277
21 6 3.7195 -0.3788 5.9417
22 7 4.7737 -1.1974 6.1291
23 8 2.8156 -0.3594 6.7502
24 6 2.6902 2.4186 5.9795
25 6 3.5041 3.5215 5.8004
26 6 3.7077 4.4067 6.8425
27 6 3.1040 4.1846 8.0661
28 6 2.2943 3.0788 8.2467
29 6 2.0876 2.1957 7.2035
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 1.8934 -0.5139 -0.8899
34 1 1.8933 -0.5137 0.8901
35 1 1.5818 1.6876 -2.0285
36 1 2.0956 3.1409 -1.1385
37 1 3.6753 3.5158 -4.4442
38 1 2.6228 0.4189 2.5299
39 1 0.9444 1.0117 2.5301
40 1 1.5887 3.9489 4.5133
41 1 1.1988 3.7962 2.7833
42 1 0.3351 2.8027 3.9813
43 1 4.5815 1.0968 4.6637
44 1 3.5599 -0.1002 3.8320
45 1 4.8093 -1.7712 6.9104
46 1 5.4947 -1.2159 5.4805
47 1 3.9788 3.6930 4.8457
48 1 4.3405 5.2704 6.7015
49 1 3.2651 4.8748 8.8809
50 1 1.8229 2.9050 9.2027
51 1 1.4554 1.3316 7.3447
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000280592326.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:31:20
Heat of formation + Delta-G solvation = -58.252527 kcal
Electronic energy + Delta-G solvation = -31616.043771 eV
Core-core repulsion = 27514.670972 eV
Total energy + Delta-G solvation = -4101.372799 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.45560 -40.52331 -39.72063 -37.94707 -36.76474 -34.87413 -34.56319 -33.24305
-31.71628 -31.56502 -30.96665 -29.89011 -28.16192 -26.48091 -24.98697 -24.25942
-23.56221 -23.09574 -22.02370 -20.69248 -19.82948 -18.63948 -18.36561 -18.12616
-17.88468 -17.32830 -17.13827 -16.56670 -16.50134 -16.22546 -15.82362 -15.76795
-15.48116 -15.14917 -14.89974 -14.62371 -14.50423 -14.16457 -14.12102 -13.93118
-13.86910 -13.64474 -13.49193 -13.28393 -13.17683 -13.01255 -12.66805 -12.60675
-12.57964 -12.44044 -12.41510 -12.12517 -11.83951 -11.78501 -11.66625 -11.60595
-10.91401 -10.60590 -10.55936 -10.47925 -9.69331 -9.54118 -9.39413 -9.24398
-8.18231 -6.32722 0.48673 0.60077 1.38630 1.42004 1.52073 1.71196
1.94640 2.19575 2.41718 2.60733 2.92792 3.11245 3.15053 3.63810
3.74588 3.89606 4.05880 4.09106 4.21209 4.22750 4.25416 4.30058
4.32564 4.45554 4.46200 4.53501 4.59775 4.66375 4.67437 4.75206
4.79537 4.93709 4.96942 5.01097 5.08756 5.09243 5.17327 5.25987
5.27431 5.40100 5.62559 5.63797 5.70008 5.73021 5.88086 5.96315
5.98888 6.11279 6.12350 6.20348 6.50617 6.76249 6.90105 7.33926
7.41573 7.61825 8.88678
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012023 B = 0.002845 C = 0.002782
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2328.364422 B = 9837.820709 C =10062.351683
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.100 3.900
3 N -0.606 5.606
4 C 0.265 3.735
5 C -0.537 4.537
6 H 0.056 0.944
7 C 0.005 3.995
8 N -0.931 5.931
9 Si 0.967 3.033
10 H -0.264 1.264
11 H -0.284 1.284
12 H -0.270 1.270
13 C 0.500 3.500
14 O -0.575 6.575
15 C 0.045 3.955
16 N -0.527 5.527
17 C 0.034 3.966
18 C 0.146 3.854
19 H 0.058 0.942
20 C -0.137 4.137
21 C 0.521 3.479
22 N -0.840 5.840
23 O -0.572 6.572
24 C -0.087 4.087
25 C -0.106 4.106
26 C -0.139 4.139
27 C -0.122 4.122
28 C -0.137 4.137
29 C -0.096 4.096
30 H 0.094 0.906
31 H 0.056 0.944
32 H 0.037 0.963
33 H 0.073 0.927
34 H 0.101 0.899
35 H 0.018 0.982
36 H -0.007 1.007
37 H 0.265 0.735
38 H 0.125 0.875
39 H 0.083 0.917
40 H 0.072 0.928
41 H 0.052 0.948
42 H 0.032 0.968
43 H 0.105 0.895
44 H 0.117 0.883
45 H 0.407 0.593
46 H 0.415 0.585
47 H 0.117 0.883
48 H 0.131 0.869
49 H 0.140 0.860
50 H 0.135 0.865
51 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.721 -10.067 22.484 24.645
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.022 4.022
3 N -0.339 5.339
4 C 0.144 3.856
5 C -0.575 4.575
6 H 0.074 0.926
7 C -0.193 4.193
8 N -0.571 5.571
9 Si 0.792 3.208
10 H -0.189 1.189
11 H -0.210 1.210
12 H -0.195 1.195
13 C 0.288 3.712
14 O -0.455 6.455
15 C -0.085 4.085
16 N -0.251 5.251
17 C -0.113 4.113
18 C 0.038 3.962
19 H 0.076 0.924
20 C -0.177 4.177
21 C 0.306 3.694
22 N -0.405 5.405
23 O -0.452 6.452
24 C -0.087 4.087
25 C -0.124 4.124
26 C -0.157 4.157
27 C -0.140 4.140
28 C -0.155 4.155
29 C -0.114 4.114
30 H 0.113 0.887
31 H 0.075 0.925
32 H 0.056 0.944
33 H 0.091 0.909
34 H 0.119 0.881
35 H 0.036 0.964
36 H 0.011 0.989
37 H 0.074 0.926
38 H 0.143 0.857
39 H 0.100 0.900
40 H 0.091 0.909
41 H 0.071 0.929
42 H 0.051 0.949
43 H 0.123 0.877
44 H 0.135 0.865
45 H 0.239 0.761
46 H 0.246 0.754
47 H 0.135 0.865
48 H 0.149 0.851
49 H 0.158 0.842
50 H 0.153 0.847
51 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -0.731 -9.010 22.594 24.336
hybrid contribution 0.375 -0.209 -0.813 0.920
sum -0.356 -9.220 21.781 23.655
Atomic orbital electron populations
1.22162 0.95047 1.03368 1.01435 1.21723 0.94956 0.81560 1.03958
1.48276 1.64395 1.15059 1.06141 1.18634 0.95190 0.91355 0.80437
1.21723 0.97863 1.31675 1.06286 0.92573 1.25872 1.02332 0.94571
0.96559 1.70061 1.37824 1.34449 1.14815 0.85419 0.79145 0.78020
0.78253 1.18889 1.21014 1.19454 1.21063 0.77443 0.86718 0.86001
1.90634 1.46811 1.20327 1.87685 1.22089 1.02564 0.95969 0.87894
1.61467 1.47946 1.12960 1.02758 1.22324 0.92058 0.94869 1.02094
1.20195 0.97519 0.91961 0.86510 0.92370 1.21753 1.00785 0.97691
0.97477 1.20534 0.81812 0.80148 0.86887 1.43727 1.23460 1.43650
1.29621 1.90697 1.38825 1.68571 1.47060 1.19619 0.98535 0.96048
0.94535 1.21129 0.97927 0.94353 0.98984 1.21368 1.00914 0.99950
0.93461 1.21410 0.97021 0.97879 0.97649 1.21363 0.99655 0.95047
0.99425 1.21185 0.99119 0.98500 0.92600 0.88695 0.92532 0.94415
0.90875 0.88097 0.96409 0.98855 0.92571 0.85692 0.89956 0.90887
0.92948 0.94917 0.87651 0.86467 0.76134 0.75378 0.86484 0.85071
0.84204 0.84703 0.85961
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.90 10.24 71.98 0.74 -3.17 16
2 C 0.10 2.90 5.93 86.38 0.51 3.41 16
3 N -0.61 -24.93 2.46 -826.15 -2.03 -26.96 16
4 C 0.27 14.24 5.16 85.63 0.44 14.68 16
5 C -0.54 -30.60 9.39 25.60 0.24 -30.36 16
6 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16
7 C 0.01 0.30 5.46 84.66 0.46 0.76 16
8 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16
9 Si 0.97 44.56 29.54 68.60 2.03 46.58 16
10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16
11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16
12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16
13 C 0.50 20.16 7.38 87.65 0.65 20.80 16
14 O -0.58 -29.37 14.49 -3.03 -0.04 -29.42 16
15 C 0.05 1.23 3.89 85.55 0.33 1.57 16
16 N -0.53 -14.76 3.63 -906.02 -3.29 -18.05 16
17 C 0.03 1.02 8.70 127.69 1.11 2.13 16
18 C 0.15 3.39 1.46 44.17 0.06 3.45 16
19 H 0.06 1.38 7.63 -2.39 -0.02 1.36 16
20 C -0.14 -2.53 5.21 29.85 0.16 -2.37 16
21 C 0.52 9.55 7.78 87.65 0.68 10.23 16
22 N -0.84 -8.97 8.87 -173.54 -1.54 -10.51 16
23 O -0.57 -14.25 13.73 -3.03 -0.04 -14.29 16
24 C -0.09 -2.13 3.33 -19.87 -0.07 -2.20 16
25 C -0.11 -2.67 7.71 22.27 0.17 -2.50 16
26 C -0.14 -3.07 10.05 22.27 0.22 -2.85 16
27 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16
28 C -0.14 -2.85 10.05 22.27 0.22 -2.63 16
29 C -0.10 -2.28 8.19 22.27 0.18 -2.10 16
30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
31 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16
32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16
33 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16
34 H 0.10 2.11 6.44 -2.38 -0.02 2.10 16
35 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16
36 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16
37 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16
38 H 0.13 2.66 4.98 -2.39 -0.01 2.65 16
39 H 0.08 1.91 7.09 -2.39 -0.02 1.89 16
40 H 0.07 2.12 5.77 -2.38 -0.01 2.11 16
41 H 0.05 1.89 6.45 -2.39 -0.02 1.87 16
42 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16
43 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16
44 H 0.12 1.75 5.94 -2.39 -0.01 1.74 16
45 H 0.41 3.56 8.93 -92.71 -0.83 2.73 16
46 H 0.42 2.34 8.83 -92.71 -0.82 1.52 16
47 H 0.12 3.33 7.73 -2.91 -0.02 3.30 16
48 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16
49 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16
50 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16
51 H 0.12 3.03 6.85 -2.91 -0.02 3.01 16
Total: -1.00 -79.79 407.56 1.03 -78.76
By element:
Atomic # 1 Polarization: 24.19 SS G_CDS: -0.69 Total: 23.51 kcal
Atomic # 6 Polarization: 0.35 SS G_CDS: 6.35 Total: 6.70 kcal
Atomic # 7 Polarization: -105.26 SS G_CDS: -6.57 Total: -111.84 kcal
Atomic # 8 Polarization: -43.63 SS G_CDS: -0.09 Total: -43.71 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal
Total: -79.79 1.03 -78.76 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000280592326.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.510 kcal
(2) G-P(sol) polarization free energy of solvation -79.788 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.762 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.253 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds