Wall clock time and date at job start Wed Apr 1 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47088 * 2 1 4 4 C 1.46508 * 119.99570 * 269.99962 * 3 2 1 5 5 C 1.50700 * 109.46644 * 269.99754 * 4 3 2 6 6 H 1.07995 * 120.00365 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00018 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99853 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00372 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46654 * 90.00054 * 9 7 5 11 11 H 1.48492 * 109.47487 * 210.00500 * 9 7 5 12 12 H 1.48504 * 109.47091 * 330.00630 * 9 7 5 13 13 C 1.34777 * 120.00511 * 89.99570 * 3 2 1 14 14 O 1.21280 * 119.99797 * 179.97438 * 13 3 2 15 15 C 1.50693 * 119.99639 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47146 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99638 * 72.78016 * 16 15 13 18 18 C 1.46895 * 111.00387 * 196.73473 * 16 15 13 19 19 H 1.09002 * 109.47108 * 304.11763 * 18 16 15 20 20 C 1.53001 * 109.47177 * 64.11457 * 18 16 15 21 21 C 1.50690 * 109.47249 * 187.03056 * 20 18 16 22 22 N 1.34778 * 120.00196 * 186.99350 * 21 20 18 23 23 O 1.21281 * 120.00273 * 7.00004 * 21 20 18 24 24 C 1.50700 * 109.47118 * 184.11698 * 18 16 15 25 25 C 1.38233 * 119.99948 * 319.72725 * 24 18 16 26 26 C 1.38237 * 119.99811 * 179.81752 * 25 24 18 27 27 C 1.38231 * 120.00353 * 0.38922 * 26 25 24 28 28 C 1.38241 * 119.99545 * 359.86298 * 27 26 25 29 29 C 1.38229 * 120.00019 * 359.95381 * 28 27 26 30 30 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47302 * 300.00621 * 1 2 3 32 32 H 1.09001 * 109.46663 * 60.00159 * 1 2 3 33 33 H 1.08997 * 109.47302 * 239.99379 * 2 1 3 34 34 H 1.09004 * 109.46638 * 119.99067 * 2 1 3 35 35 H 1.08995 * 109.47268 * 29.99736 * 4 3 2 36 36 H 1.08994 * 109.46910 * 150.00243 * 4 3 2 37 37 H 0.96998 * 120.00298 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.47734 * 60.00159 * 15 13 3 39 39 H 1.09001 * 109.47186 * 299.99522 * 15 13 3 40 40 H 1.09006 * 109.46857 * 183.95826 * 17 16 15 41 41 H 1.08997 * 109.47384 * 303.95588 * 17 16 15 42 42 H 1.09001 * 109.46890 * 63.95571 * 17 16 15 43 43 H 1.08997 * 109.46903 * 67.02897 * 20 18 16 44 44 H 1.08995 * 109.46893 * 307.03555 * 20 18 16 45 45 H 0.96998 * 120.00153 * 180.02562 * 22 21 20 46 46 H 0.97001 * 119.99951 * 359.72920 * 22 21 20 47 47 H 1.07997 * 120.00147 * 359.97438 * 25 24 18 48 48 H 1.07998 * 119.99814 * 180.23375 * 26 25 24 49 49 H 1.07996 * 120.00225 * 179.84191 * 27 26 25 50 50 H 1.07998 * 119.99917 * 179.97438 * 28 27 26 51 51 H 1.08004 * 120.00111 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2689 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2302 -1.0961 7 6 4.1492 2.3894 -2.8780 8 7 3.3493 3.1254 -3.6183 9 14 5.9136 2.0965 -3.4169 10 1 5.9776 0.8750 -4.2590 11 1 6.3923 3.2636 -4.2003 12 1 6.7737 1.9178 -2.2195 13 6 2.2429 2.0167 1.1671 14 8 2.6476 3.1600 1.1670 15 6 1.9922 1.3062 2.4722 16 7 2.3108 2.2061 3.5888 17 6 1.2927 3.2562 3.7255 18 6 2.4649 1.4558 4.8422 19 1 1.5621 0.8750 5.0313 20 6 3.6638 0.5121 4.7277 21 6 3.7195 -0.3788 5.9417 22 7 4.7737 -1.1974 6.1291 23 8 2.8156 -0.3594 6.7502 24 6 2.6902 2.4186 5.9795 25 6 3.5041 3.5215 5.8004 26 6 3.7077 4.4067 6.8425 27 6 3.1040 4.1846 8.0661 28 6 2.2943 3.0788 8.2467 29 6 2.0876 2.1957 7.2035 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.5818 1.6876 -2.0285 36 1 2.0956 3.1409 -1.1385 37 1 3.6753 3.5158 -4.4442 38 1 2.6228 0.4189 2.5299 39 1 0.9444 1.0117 2.5301 40 1 1.5887 3.9489 4.5133 41 1 1.1988 3.7962 2.7833 42 1 0.3351 2.8027 3.9813 43 1 4.5815 1.0968 4.6637 44 1 3.5599 -0.1002 3.8320 45 1 4.8093 -1.7712 6.9104 46 1 5.4947 -1.2159 5.4805 47 1 3.9788 3.6930 4.8457 48 1 4.3405 5.2704 6.7015 49 1 3.2651 4.8748 8.8809 50 1 1.8229 2.9050 9.2027 51 1 1.4554 1.3316 7.3447 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280592326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:20 Heat of formation + Delta-G solvation = -58.252527 kcal Electronic energy + Delta-G solvation = -31616.043771 eV Core-core repulsion = 27514.670972 eV Total energy + Delta-G solvation = -4101.372799 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.45560 -40.52331 -39.72063 -37.94707 -36.76474 -34.87413 -34.56319 -33.24305 -31.71628 -31.56502 -30.96665 -29.89011 -28.16192 -26.48091 -24.98697 -24.25942 -23.56221 -23.09574 -22.02370 -20.69248 -19.82948 -18.63948 -18.36561 -18.12616 -17.88468 -17.32830 -17.13827 -16.56670 -16.50134 -16.22546 -15.82362 -15.76795 -15.48116 -15.14917 -14.89974 -14.62371 -14.50423 -14.16457 -14.12102 -13.93118 -13.86910 -13.64474 -13.49193 -13.28393 -13.17683 -13.01255 -12.66805 -12.60675 -12.57964 -12.44044 -12.41510 -12.12517 -11.83951 -11.78501 -11.66625 -11.60595 -10.91401 -10.60590 -10.55936 -10.47925 -9.69331 -9.54118 -9.39413 -9.24398 -8.18231 -6.32722 0.48673 0.60077 1.38630 1.42004 1.52073 1.71196 1.94640 2.19575 2.41718 2.60733 2.92792 3.11245 3.15053 3.63810 3.74588 3.89606 4.05880 4.09106 4.21209 4.22750 4.25416 4.30058 4.32564 4.45554 4.46200 4.53501 4.59775 4.66375 4.67437 4.75206 4.79537 4.93709 4.96942 5.01097 5.08756 5.09243 5.17327 5.25987 5.27431 5.40100 5.62559 5.63797 5.70008 5.73021 5.88086 5.96315 5.98888 6.11279 6.12350 6.20348 6.50617 6.76249 6.90105 7.33926 7.41573 7.61825 8.88678 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.002845 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.364422 B = 9837.820709 C =10062.351683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.537 4.537 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.500 3.500 14 O -0.575 6.575 15 C 0.045 3.955 16 N -0.527 5.527 17 C 0.034 3.966 18 C 0.146 3.854 19 H 0.058 0.942 20 C -0.137 4.137 21 C 0.521 3.479 22 N -0.840 5.840 23 O -0.572 6.572 24 C -0.087 4.087 25 C -0.106 4.106 26 C -0.139 4.139 27 C -0.122 4.122 28 C -0.137 4.137 29 C -0.096 4.096 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.018 0.982 36 H -0.007 1.007 37 H 0.265 0.735 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.032 0.968 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.407 0.593 46 H 0.415 0.585 47 H 0.117 0.883 48 H 0.131 0.869 49 H 0.140 0.860 50 H 0.135 0.865 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 -10.067 22.484 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.575 4.575 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.288 3.712 14 O -0.455 6.455 15 C -0.085 4.085 16 N -0.251 5.251 17 C -0.113 4.113 18 C 0.038 3.962 19 H 0.076 0.924 20 C -0.177 4.177 21 C 0.306 3.694 22 N -0.405 5.405 23 O -0.452 6.452 24 C -0.087 4.087 25 C -0.124 4.124 26 C -0.157 4.157 27 C -0.140 4.140 28 C -0.155 4.155 29 C -0.114 4.114 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.036 0.964 36 H 0.011 0.989 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.123 0.877 44 H 0.135 0.865 45 H 0.239 0.761 46 H 0.246 0.754 47 H 0.135 0.865 48 H 0.149 0.851 49 H 0.158 0.842 50 H 0.153 0.847 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.731 -9.010 22.594 24.336 hybrid contribution 0.375 -0.209 -0.813 0.920 sum -0.356 -9.220 21.781 23.655 Atomic orbital electron populations 1.22162 0.95047 1.03368 1.01435 1.21723 0.94956 0.81560 1.03958 1.48276 1.64395 1.15059 1.06141 1.18634 0.95190 0.91355 0.80437 1.21723 0.97863 1.31675 1.06286 0.92573 1.25872 1.02332 0.94571 0.96559 1.70061 1.37824 1.34449 1.14815 0.85419 0.79145 0.78020 0.78253 1.18889 1.21014 1.19454 1.21063 0.77443 0.86718 0.86001 1.90634 1.46811 1.20327 1.87685 1.22089 1.02564 0.95969 0.87894 1.61467 1.47946 1.12960 1.02758 1.22324 0.92058 0.94869 1.02094 1.20195 0.97519 0.91961 0.86510 0.92370 1.21753 1.00785 0.97691 0.97477 1.20534 0.81812 0.80148 0.86887 1.43727 1.23460 1.43650 1.29621 1.90697 1.38825 1.68571 1.47060 1.19619 0.98535 0.96048 0.94535 1.21129 0.97927 0.94353 0.98984 1.21368 1.00914 0.99950 0.93461 1.21410 0.97021 0.97879 0.97649 1.21363 0.99655 0.95047 0.99425 1.21185 0.99119 0.98500 0.92600 0.88695 0.92532 0.94415 0.90875 0.88097 0.96409 0.98855 0.92571 0.85692 0.89956 0.90887 0.92948 0.94917 0.87651 0.86467 0.76134 0.75378 0.86484 0.85071 0.84204 0.84703 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.17 16 2 C 0.10 2.90 5.93 86.38 0.51 3.41 16 3 N -0.61 -24.93 2.46 -826.15 -2.03 -26.96 16 4 C 0.27 14.24 5.16 85.63 0.44 14.68 16 5 C -0.54 -30.60 9.39 25.60 0.24 -30.36 16 6 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.30 5.46 84.66 0.46 0.76 16 8 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 9 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 C 0.50 20.16 7.38 87.65 0.65 20.80 16 14 O -0.58 -29.37 14.49 -3.03 -0.04 -29.42 16 15 C 0.05 1.23 3.89 85.55 0.33 1.57 16 16 N -0.53 -14.76 3.63 -906.02 -3.29 -18.05 16 17 C 0.03 1.02 8.70 127.69 1.11 2.13 16 18 C 0.15 3.39 1.46 44.17 0.06 3.45 16 19 H 0.06 1.38 7.63 -2.39 -0.02 1.36 16 20 C -0.14 -2.53 5.21 29.85 0.16 -2.37 16 21 C 0.52 9.55 7.78 87.65 0.68 10.23 16 22 N -0.84 -8.97 8.87 -173.54 -1.54 -10.51 16 23 O -0.57 -14.25 13.73 -3.03 -0.04 -14.29 16 24 C -0.09 -2.13 3.33 -19.87 -0.07 -2.20 16 25 C -0.11 -2.67 7.71 22.27 0.17 -2.50 16 26 C -0.14 -3.07 10.05 22.27 0.22 -2.85 16 27 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16 28 C -0.14 -2.85 10.05 22.27 0.22 -2.63 16 29 C -0.10 -2.28 8.19 22.27 0.18 -2.10 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 34 H 0.10 2.11 6.44 -2.38 -0.02 2.10 16 35 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 36 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 37 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.13 2.66 4.98 -2.39 -0.01 2.65 16 39 H 0.08 1.91 7.09 -2.39 -0.02 1.89 16 40 H 0.07 2.12 5.77 -2.38 -0.01 2.11 16 41 H 0.05 1.89 6.45 -2.39 -0.02 1.87 16 42 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 44 H 0.12 1.75 5.94 -2.39 -0.01 1.74 16 45 H 0.41 3.56 8.93 -92.71 -0.83 2.73 16 46 H 0.42 2.34 8.83 -92.71 -0.82 1.52 16 47 H 0.12 3.33 7.73 -2.91 -0.02 3.30 16 48 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 49 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 50 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 51 H 0.12 3.03 6.85 -2.91 -0.02 3.01 16 Total: -1.00 -79.79 407.56 1.03 -78.76 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.69 Total: 23.51 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.35 Total: 6.70 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -6.57 Total: -111.84 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.09 Total: -43.71 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -79.79 1.03 -78.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280592326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.510 kcal (2) G-P(sol) polarization free energy of solvation -79.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds