Wall clock time and date at job start Wed Apr 1 2020 04:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46971 * 2 1 4 4 C 1.46897 * 111.00143 * 296.66581 * 3 2 1 5 5 C 1.52999 * 109.47262 * 288.20454 * 4 3 2 6 6 C 1.46901 * 111.00292 * 60.62244 * 3 2 1 7 7 C 1.53003 * 109.46916 * 66.04286 * 6 3 2 8 8 H 1.08995 * 110.64310 * 308.14213 * 7 6 3 9 9 C 1.55157 * 110.71808 * 71.48177 * 7 6 3 10 10 C 1.54911 * 101.58385 * 153.86323 * 9 7 6 11 11 N 1.47425 * 104.82841 * 322.99013 * 10 9 7 12 12 S 1.65601 * 125.64522 * 204.16455 * 11 10 9 13 13 O 1.42092 * 106.40534 * 23.49430 * 12 11 10 14 14 O 1.42096 * 106.40428 * 156.42029 * 12 11 10 15 15 N 1.65605 * 107.21463 * 269.95766 * 12 11 10 16 16 C 1.46501 * 119.99811 * 269.99924 * 15 12 11 17 17 C 1.46493 * 120.00253 * 90.00625 * 15 12 11 18 18 H 1.09005 * 109.47109 * 359.97438 * 17 15 12 19 19 C 1.53001 * 109.47747 * 119.99520 * 17 15 12 20 20 C 1.50706 * 109.47150 * 239.99889 * 17 15 12 21 21 H 1.08003 * 119.99372 * 359.97438 * 20 17 15 22 22 C 1.37870 * 120.00098 * 179.97438 * 20 17 15 23 23 N 1.31512 * 120.00169 * 359.97438 * 22 20 17 24 24 Si 1.86806 * 119.99736 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.47277 * 90.00022 * 24 22 20 26 26 H 1.48503 * 109.46706 * 209.99984 * 24 22 20 27 27 H 1.48494 * 109.47089 * 329.99383 * 24 22 20 28 28 C 1.47024 * 108.70591 * 24.12606 * 11 10 9 29 29 H 1.09000 * 109.46882 * 61.05153 * 1 2 3 30 30 H 1.09000 * 109.47084 * 181.05376 * 1 2 3 31 31 H 1.09000 * 109.47139 * 301.05470 * 1 2 3 32 32 H 1.08998 * 109.47264 * 239.99753 * 2 1 3 33 33 H 1.08996 * 109.47079 * 119.99519 * 2 1 3 34 34 H 1.09006 * 109.47189 * 48.19990 * 4 3 2 35 35 H 1.08999 * 109.47505 * 168.20141 * 4 3 2 36 36 H 1.09002 * 109.46667 * 299.79397 * 5 4 3 37 37 H 1.08993 * 109.47383 * 59.79097 * 5 4 3 38 38 H 1.09000 * 109.47558 * 179.79975 * 5 4 3 39 39 H 1.08993 * 109.47050 * 306.04469 * 6 3 2 40 40 H 1.08994 * 109.46963 * 186.04433 * 6 3 2 41 41 H 1.08996 * 111.00369 * 271.93572 * 9 7 6 42 42 H 1.09002 * 111.00865 * 35.78592 * 9 7 6 43 43 H 1.08999 * 110.36894 * 204.15200 * 10 9 7 44 44 H 1.09002 * 110.45558 * 81.87102 * 10 9 7 45 45 H 1.08995 * 109.47094 * 90.00589 * 16 15 12 46 46 H 1.09006 * 109.47309 * 210.00108 * 16 15 12 47 47 H 1.09002 * 109.47434 * 330.00120 * 16 15 12 48 48 H 1.08990 * 109.47075 * 179.97438 * 19 17 15 49 49 H 1.09001 * 109.46634 * 300.00335 * 19 17 15 50 50 H 1.09001 * 109.46498 * 60.00152 * 19 17 15 51 51 H 0.97008 * 120.00067 * 180.02562 * 23 22 20 52 52 H 1.09000 * 109.88314 * 239.52459 * 28 11 10 53 53 H 1.09003 * 110.00825 * 118.42850 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6148 2.0865 -1.2255 5 6 2.4202 1.5494 -2.4103 6 6 1.5608 2.1057 1.1951 7 6 2.2052 1.4917 2.4396 8 1 2.0523 0.4127 2.4589 9 6 3.7166 1.8371 2.5022 10 6 3.9901 1.7613 4.0251 11 7 2.7730 2.3051 4.6546 12 16 2.6875 2.9845 6.1624 13 8 3.9979 3.4374 6.4734 14 8 1.5516 3.8383 6.1540 15 7 2.3482 1.7654 7.2307 16 6 0.9564 1.4298 7.5411 17 6 3.4399 1.0228 7.8655 18 1 4.3959 1.4111 7.5141 19 6 3.3508 1.1838 9.3844 20 6 3.3290 -0.4369 7.5077 21 1 2.5254 -0.7774 6.8714 22 6 4.2534 -1.3376 7.9926 23 7 5.2321 -0.9229 8.7669 24 14 4.1155 -3.1472 7.5496 25 1 4.8801 -3.4117 6.3044 26 1 4.6687 -3.9708 8.6546 27 1 2.6881 -3.4976 7.3379 28 6 1.6479 2.1452 3.7217 29 1 -0.3633 0.4974 -0.8993 30 1 -0.3633 -1.0275 0.0189 31 1 -0.3633 0.5301 0.8804 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 0.5522 1.9220 -1.4042 35 1 1.8032 3.1541 -1.1122 36 1 3.4826 1.7172 -2.2333 37 1 2.2347 0.4812 -2.5214 38 1 2.1174 2.0674 -3.3203 39 1 0.4763 2.0284 1.2719 40 1 1.8458 3.1549 1.1183 41 1 4.3088 1.0988 1.9617 42 1 3.9041 2.8410 2.1210 43 1 4.8562 2.3696 4.2857 44 1 4.1469 0.7275 4.3329 45 1 0.6016 0.6707 6.8440 46 1 0.8936 1.0456 8.5593 47 1 0.3384 2.3231 7.4511 48 1 4.1627 0.6309 9.8566 49 1 3.4309 2.2397 9.6431 50 1 2.3948 0.7953 9.7354 51 1 5.8827 -1.5567 9.1078 52 1 1.2208 3.1198 3.4855 53 1 0.8854 1.5036 4.1634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330410025.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:39 Heat of formation + Delta-G solvation = -88.399691 kcal Electronic energy + Delta-G solvation = -31049.615360 eV Core-core repulsion = 27082.379233 eV Total energy + Delta-G solvation = -3967.236127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.24204 -38.44901 -38.38592 -37.89930 -36.94375 -34.51221 -33.18320 -32.03778 -30.93505 -30.46822 -29.43758 -27.32183 -26.98629 -25.79278 -24.67684 -23.26112 -22.49472 -21.50771 -20.37670 -19.89505 -18.79611 -18.47628 -18.33088 -17.52321 -17.05332 -16.85188 -16.43922 -16.11029 -15.32605 -15.17000 -15.08005 -14.80856 -14.73814 -14.55931 -14.38784 -13.90329 -13.86528 -13.68093 -13.51949 -13.47767 -13.26745 -13.20856 -13.03067 -12.99868 -12.92794 -12.79277 -12.68515 -12.64256 -12.45882 -12.25102 -12.22569 -12.14325 -11.99739 -11.92335 -11.87551 -11.68589 -11.51202 -11.17987 -11.14334 -10.49601 -9.96458 -9.65170 -9.10224 -8.08563 -6.23639 -0.37392 1.45304 1.46882 1.55994 1.97834 2.45642 2.55461 2.94813 3.19743 3.27719 3.67908 3.80150 3.89619 4.10459 4.12518 4.28649 4.36176 4.38810 4.43480 4.50568 4.56426 4.58252 4.64313 4.68000 4.70523 4.74112 4.77299 4.78141 4.91824 4.93799 4.96510 5.01278 5.04964 5.11211 5.13352 5.16422 5.18117 5.19859 5.21632 5.23513 5.32416 5.41123 5.48630 5.53221 5.61698 5.75865 5.86449 6.10005 6.21750 6.26453 6.29294 6.85229 7.46196 8.96085 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.003562 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.185536 B = 7859.737182 C = 9230.342119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.043 3.957 3 N -0.540 5.540 4 C 0.044 3.956 5 C -0.142 4.142 6 C 0.066 3.934 7 C -0.083 4.083 8 H 0.089 0.911 9 C -0.095 4.095 10 C 0.110 3.890 11 N -1.016 6.016 12 S 2.807 3.193 13 O -1.014 7.014 14 O -1.003 7.003 15 N -0.998 5.998 16 C 0.096 3.904 17 C 0.274 3.726 18 H 0.023 0.977 19 C -0.140 4.140 20 C -0.526 4.526 21 H 0.066 0.934 22 C 0.017 3.983 23 N -0.918 5.918 24 Si 0.958 3.042 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.266 1.266 28 C 0.122 3.878 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.018 0.982 50 H 0.046 0.954 51 H 0.263 0.737 52 H 0.073 0.927 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.567 2.259 -19.586 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.084 4.084 3 N -0.264 5.264 4 C -0.083 4.083 5 C -0.200 4.200 6 C -0.063 4.063 7 C -0.103 4.103 8 H 0.107 0.893 9 C -0.134 4.134 10 C -0.015 4.015 11 N -0.858 5.858 12 S 2.819 3.181 13 O -0.998 6.998 14 O -0.987 6.987 15 N -0.839 5.839 16 C -0.049 4.049 17 C 0.169 3.831 18 H 0.040 0.960 19 C -0.200 4.200 20 C -0.566 4.566 21 H 0.084 0.916 22 C -0.182 4.182 23 N -0.558 5.558 24 Si 0.784 3.216 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.190 1.190 28 C -0.004 4.004 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.037 0.963 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.091 0.909 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.798 3.167 -19.166 21.325 hybrid contribution -0.571 -1.297 0.367 1.464 sum -9.369 1.870 -18.799 21.087 Atomic orbital electron populations 1.22376 0.97869 1.02685 1.01922 1.22232 0.93217 0.90077 1.02922 1.62204 1.59808 1.02529 1.01855 1.22164 0.97973 0.98399 0.89768 1.21725 1.00428 1.01060 0.96793 1.22092 0.97758 0.97882 0.88525 1.22164 0.95343 1.00664 0.92127 0.89326 1.22620 0.95779 1.03066 0.91952 1.22157 0.86109 0.98479 0.94794 1.58856 1.17187 1.77848 1.31862 1.00803 0.71796 0.73364 0.72176 1.93519 1.41568 1.80666 1.84065 1.93492 1.53010 1.64961 1.87255 1.57685 1.13680 1.54130 1.58415 1.21420 0.79996 1.00787 1.02718 1.18388 0.83458 0.90843 0.90370 0.95969 1.21959 1.01813 0.97688 0.98528 1.21571 1.12115 0.92402 1.30480 0.91629 1.25674 0.94834 1.02853 0.94859 1.70018 1.15352 1.35999 1.34399 0.85561 0.78513 0.79908 0.77648 1.20234 1.21360 1.19018 1.21838 0.87915 1.00994 0.89650 0.92189 0.91702 0.92623 0.90201 0.90922 0.93929 0.90923 0.92718 0.92816 0.91514 0.93284 0.90299 0.88776 0.90296 0.91776 0.92242 0.92600 0.90696 0.90591 0.91054 0.96268 0.93536 0.92739 0.90908 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 9.28 71.98 0.67 -1.85 16 2 C 0.04 0.64 5.72 86.30 0.49 1.13 16 3 N -0.54 -8.47 4.59 -896.24 -4.11 -12.59 16 4 C 0.04 0.59 5.56 86.30 0.48 1.06 16 5 C -0.14 -1.70 9.96 71.98 0.72 -0.98 16 6 C 0.07 1.09 4.02 86.30 0.35 1.44 16 7 C -0.08 -1.71 2.90 -9.60 -0.03 -1.74 16 8 H 0.09 1.84 6.29 -2.39 -0.02 1.82 16 9 C -0.10 -2.17 6.45 31.99 0.21 -1.96 16 10 C 0.11 3.46 7.11 86.86 0.62 4.07 16 11 N -1.02 -33.97 3.76 -506.41 -1.90 -35.88 16 12 S 2.81 114.76 6.35 -56.49 -0.36 114.40 16 13 O -1.01 -48.88 16.02 -128.00 -2.05 -50.94 16 14 O -1.00 -41.25 16.32 -128.00 -2.09 -43.34 16 15 N -1.00 -42.16 3.12 -520.44 -1.62 -43.78 16 16 C 0.10 3.37 9.90 127.77 1.26 4.64 16 17 C 0.27 13.68 2.62 44.25 0.12 13.79 16 18 H 0.02 1.28 6.91 -2.38 -0.02 1.26 16 19 C -0.14 -6.83 8.95 71.98 0.64 -6.18 16 20 C -0.53 -26.96 8.37 25.60 0.21 -26.75 16 21 H 0.07 3.24 7.65 -2.91 -0.02 3.22 16 22 C 0.02 0.91 5.30 84.65 0.45 1.36 16 23 N -0.92 -51.18 11.32 21.44 0.24 -50.94 16 24 Si 0.96 41.32 29.54 68.60 2.03 43.35 16 25 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 28 C 0.12 3.12 6.59 86.73 0.57 3.69 16 29 H 0.06 0.74 6.30 -2.39 -0.02 0.73 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.80 6.23 -2.39 -0.01 0.79 16 32 H 0.08 1.10 6.57 -2.39 -0.02 1.08 16 33 H 0.07 1.19 6.31 -2.39 -0.02 1.18 16 34 H 0.04 0.53 5.92 -2.38 -0.01 0.51 16 35 H 0.07 0.94 7.81 -2.39 -0.02 0.92 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 0.64 6.69 -2.39 -0.02 0.62 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.05 0.76 6.00 -2.39 -0.01 0.75 16 40 H 0.08 1.30 7.72 -2.39 -0.02 1.28 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.08 1.70 7.94 -2.39 -0.02 1.68 16 43 H 0.06 2.16 7.78 -2.39 -0.02 2.14 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.07 2.61 6.43 -2.38 -0.02 2.59 16 47 H 0.08 2.41 7.02 -2.39 -0.02 2.39 16 48 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 49 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.05 2.08 6.66 -2.39 -0.02 2.06 16 51 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 52 H 0.07 1.75 7.82 -2.39 -0.02 1.73 16 53 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -64.63 408.63 -2.23 -66.86 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.88 Total: 21.11 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 6.76 Total: -8.26 kcal Atomic # 7 Polarization: -135.79 SS G_CDS: -7.39 Total: -143.18 kcal Atomic # 8 Polarization: -90.13 SS G_CDS: -4.14 Total: -94.27 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 114.76 SS G_CDS: -0.36 Total: 114.40 kcal Total: -64.63 -2.23 -66.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330410025.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.539 kcal (2) G-P(sol) polarization free energy of solvation -64.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds