Wall clock time and date at job start Wed Apr 1 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47193 * 2 1 4 4 C 1.46500 * 120.00090 * 274.31958 * 3 2 1 5 5 C 1.50703 * 109.46902 * 278.74372 * 4 3 2 6 6 H 1.08000 * 120.00054 * 5.42326 * 5 4 3 7 7 C 1.37880 * 119.99661 * 185.42005 * 5 4 3 8 8 N 1.31519 * 120.00165 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99712 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47236 * 90.00111 * 9 7 5 11 11 H 1.48500 * 109.46916 * 209.99537 * 9 7 5 12 12 H 1.48501 * 109.47125 * 329.99667 * 9 7 5 13 13 S 1.65593 * 119.99865 * 94.32002 * 3 2 1 14 14 O 1.42104 * 106.40325 * 335.34269 * 13 3 2 15 15 O 1.42104 * 106.40609 * 202.42045 * 13 3 2 16 16 N 1.65602 * 107.21956 * 88.88171 * 13 3 2 17 17 C 1.46499 * 120.00035 * 66.24736 * 16 13 3 18 18 C 1.52996 * 109.47125 * 163.04979 * 17 16 13 19 19 H 1.09004 * 109.46947 * 63.87345 * 18 17 16 20 20 C 1.53000 * 109.46977 * 183.86907 * 18 17 16 21 21 N 1.46893 * 109.47597 * 303.87057 * 18 17 16 22 22 C 1.46841 * 111.00285 * 170.52055 * 21 18 17 23 23 C 1.53039 * 109.52622 * 185.84266 * 22 21 18 24 24 C 1.53123 * 109.27447 * 300.81960 * 23 22 21 25 25 C 1.53122 * 109.15970 * 57.65510 * 24 23 22 26 26 H 1.08999 * 109.50463 * 62.32656 * 25 24 23 27 27 C 1.53004 * 109.49995 * 182.40440 * 25 24 23 28 28 C 1.46849 * 111.00026 * 294.73237 * 21 18 17 29 29 H 1.09004 * 109.47558 * 185.05111 * 1 2 3 30 30 H 1.09007 * 109.47306 * 305.05413 * 1 2 3 31 31 H 1.09005 * 109.47343 * 65.05441 * 1 2 3 32 32 H 1.09001 * 109.46529 * 240.00056 * 2 1 3 33 33 H 1.09001 * 109.46759 * 120.00559 * 2 1 3 34 34 H 1.09004 * 109.46971 * 38.74522 * 4 3 2 35 35 H 1.08992 * 109.47129 * 158.74171 * 4 3 2 36 36 H 0.96999 * 119.99749 * 179.97438 * 8 7 5 37 37 H 0.97002 * 119.99943 * 246.24642 * 16 13 3 38 38 H 1.08996 * 109.47200 * 43.04987 * 17 16 13 39 39 H 1.08997 * 109.47112 * 283.05402 * 17 16 13 40 40 H 1.09000 * 109.47176 * 180.02562 * 20 18 17 41 41 H 1.09004 * 109.47625 * 299.99960 * 20 18 17 42 42 H 1.09004 * 109.46924 * 60.00424 * 20 18 17 43 43 H 1.08998 * 109.46444 * 305.85451 * 22 21 18 44 44 H 1.08999 * 109.46403 * 65.82520 * 22 21 18 45 45 H 1.08997 * 109.50503 * 60.75808 * 23 22 21 46 46 H 1.09000 * 109.50671 * 180.87997 * 23 22 21 47 47 H 1.09007 * 109.52243 * 177.55439 * 24 23 22 48 48 H 1.08992 * 109.52509 * 297.68391 * 24 23 22 49 49 H 1.08994 * 109.47613 * 59.99870 * 27 25 24 50 50 H 1.09004 * 109.46804 * 179.97438 * 27 25 24 51 51 H 1.09006 * 109.47179 * 299.99223 * 27 25 24 52 52 H 1.09000 * 109.46441 * 294.17390 * 28 21 18 53 53 H 1.08997 * 109.46340 * 54.14330 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1724 2.1037 -1.2651 5 6 3.4755 1.7109 -1.9123 6 1 4.0822 0.9316 -1.4753 7 6 3.8930 2.3465 -3.0624 8 7 3.1539 3.2952 -3.5949 9 14 5.5079 1.8593 -3.8651 10 1 5.2638 0.7748 -4.8497 11 1 6.0906 3.0358 -4.5589 12 1 6.4529 1.3799 -2.8247 13 16 2.3962 2.1258 1.4300 14 8 1.6394 1.4681 2.4371 15 8 2.3180 3.5238 1.1875 16 7 3.9870 1.7949 1.7496 17 6 5.0360 2.3314 0.8790 18 6 6.3846 2.2525 1.5972 19 1 6.6404 1.2081 1.7760 20 6 7.4641 2.9002 0.7276 21 7 6.2985 2.9621 2.8804 22 6 7.4947 2.7204 3.6969 23 6 7.3076 3.3523 5.0781 24 6 7.0717 4.8568 4.9178 25 6 5.8490 5.0813 4.0239 26 1 4.9661 4.6565 4.5015 27 6 5.6417 6.5820 3.8095 28 6 6.0785 4.3992 2.6733 29 1 -0.3634 -1.0237 0.0905 30 1 -0.3634 0.5903 0.8413 31 1 -0.3634 0.4334 -0.9318 32 1 1.8932 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.3461 1.8523 -1.9301 35 1 2.1708 3.1766 -1.0733 36 1 3.4479 3.7425 -4.4038 37 1 4.2243 1.2459 2.5133 38 1 4.8125 3.3708 0.6389 39 1 5.0791 1.7474 -0.0403 40 1 8.4250 2.8436 1.2391 41 1 7.5282 2.3736 -0.2246 42 1 7.2083 3.9446 0.5488 43 1 7.6487 1.6469 3.8066 44 1 8.3630 3.1637 3.2093 45 1 6.4478 2.8998 5.5719 46 1 8.2020 3.1862 5.6786 47 1 6.8948 5.3040 5.8960 48 1 7.9479 5.3162 4.4604 49 1 6.5242 7.0060 3.3307 50 1 4.7714 6.7412 3.1727 51 1 5.4817 7.0679 4.7721 52 1 6.9533 4.8347 2.1904 53 1 5.2037 4.5451 2.0396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336898575.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:27 Heat of formation + Delta-G solvation = -113.879665 kcal Electronic energy + Delta-G solvation = -31822.491625 eV Core-core repulsion = 27854.150604 eV Total energy + Delta-G solvation = -3968.341022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.62225 -38.25372 -37.66209 -37.15329 -36.80856 -34.71559 -34.57572 -32.92916 -31.49176 -30.71247 -28.47181 -27.58296 -26.74147 -25.20970 -24.90501 -23.25960 -22.70344 -21.51474 -20.24634 -20.12551 -18.59186 -18.55855 -18.18611 -17.33583 -17.14143 -16.64562 -16.19868 -15.77122 -15.58654 -15.41970 -15.22184 -14.83160 -14.79068 -14.61155 -14.53675 -13.94715 -13.85694 -13.72575 -13.62657 -13.44298 -13.37986 -13.24106 -13.09692 -12.98738 -12.97332 -12.69903 -12.69649 -12.65799 -12.59345 -12.37875 -12.22886 -12.05577 -11.92174 -11.71338 -11.59341 -11.54784 -11.47929 -11.19236 -11.01276 -10.54202 -10.21201 -9.73997 -9.14392 -8.12143 -6.25140 -0.19120 1.45411 1.46528 1.55910 2.11693 2.45716 2.68177 2.97621 3.20374 3.52167 3.78999 3.84995 3.92660 4.01928 4.07835 4.16512 4.29674 4.36723 4.43224 4.45706 4.49310 4.52838 4.61119 4.66854 4.69689 4.73078 4.75697 4.82927 4.84782 4.90068 5.00720 5.02352 5.03781 5.08173 5.13669 5.16795 5.18940 5.27370 5.29762 5.31126 5.32325 5.42788 5.43473 5.56497 5.57119 5.81559 5.96936 6.15803 6.18692 6.29289 6.41547 6.86649 7.44272 8.96150 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009944 B = 0.004677 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.170918 B = 5985.661677 C = 7481.990127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.998 5.998 4 C 0.259 3.741 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.014 3.986 8 N -0.930 5.930 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.249 1.249 13 S 2.799 3.201 14 O -1.010 7.010 15 O -1.021 7.021 16 N -1.098 6.098 17 C 0.131 3.869 18 C 0.082 3.918 19 H 0.107 0.893 20 C -0.182 4.182 21 N -0.533 5.533 22 C 0.052 3.948 23 C -0.113 4.113 24 C -0.109 4.109 25 C -0.090 4.090 26 H 0.060 0.940 27 C -0.146 4.146 28 C 0.055 3.945 29 H 0.091 0.909 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.014 0.986 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.422 0.578 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.085 0.915 44 H 0.038 0.962 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.060 0.940 50 H 0.040 0.960 51 H 0.069 0.931 52 H 0.040 0.960 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.662 -3.359 14.377 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.838 5.838 4 C 0.135 3.865 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.186 4.186 8 N -0.570 5.570 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.173 1.173 13 S 2.807 3.193 14 O -0.994 6.994 15 O -1.005 7.005 16 N -0.860 5.860 17 C 0.004 3.996 18 C -0.028 4.028 19 H 0.125 0.875 20 C -0.242 4.242 21 N -0.257 5.257 22 C -0.075 4.075 23 C -0.151 4.151 24 C -0.147 4.147 25 C -0.109 4.109 26 H 0.079 0.921 27 C -0.204 4.204 28 C -0.073 4.073 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.258 0.742 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.059 0.941 51 H 0.088 0.912 52 H 0.058 0.942 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.596 -2.789 14.874 17.919 hybrid contribution 1.166 0.224 -1.500 1.913 sum 10.762 -2.565 13.374 17.357 Atomic orbital electron populations 1.22201 0.96173 1.03132 1.01195 1.21231 0.94441 0.81364 1.03299 1.57671 1.79575 1.24044 1.22553 1.18735 0.96507 0.91016 0.80223 1.21787 1.05814 1.20100 1.09380 0.90340 1.25774 1.00440 0.94678 0.97690 1.70086 1.39879 1.25437 1.21561 0.85665 0.80150 0.77475 0.79160 1.20329 1.21797 1.17251 1.01095 0.73354 0.72736 0.72131 1.93514 1.70244 1.76950 1.58734 1.93513 1.87066 1.33853 1.86054 1.55234 1.23203 1.67718 1.39895 1.21425 0.87053 0.98376 0.92756 1.21890 0.92752 0.99658 0.88515 0.87536 1.22373 0.99485 1.01305 1.00991 1.62062 1.38843 1.09313 1.15504 1.22191 0.90220 1.01347 0.93734 1.21580 1.02434 0.95020 0.96083 1.21604 0.96803 0.96748 0.99505 1.21159 0.99153 0.95376 0.95251 0.92140 1.21793 1.01417 0.95104 1.02070 1.22161 0.99833 0.88044 0.97295 0.89033 0.93843 0.93333 0.89873 0.89720 0.96805 0.96381 0.92786 0.74168 0.93475 0.90357 0.90377 0.91917 0.93118 0.89702 0.94399 0.91893 0.89737 0.90974 0.91877 0.92140 0.94121 0.91190 0.94220 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.26 10.24 71.98 0.74 -4.53 16 2 C 0.12 4.13 6.03 86.38 0.52 4.65 16 3 N -1.00 -41.23 2.83 -519.85 -1.47 -42.71 16 4 C 0.26 12.99 5.46 85.63 0.47 13.46 16 5 C -0.53 -26.54 8.04 25.60 0.21 -26.33 16 6 H 0.08 3.63 6.63 -2.91 -0.02 3.61 16 7 C 0.01 0.71 5.46 84.65 0.46 1.17 16 8 N -0.93 -53.29 13.29 21.45 0.28 -53.00 16 9 Si 0.95 40.28 29.54 68.60 2.03 42.30 16 10 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 13 S 2.80 113.98 6.11 -56.49 -0.35 113.64 16 14 O -1.01 -41.78 17.11 -128.00 -2.19 -43.97 16 15 O -1.02 -50.17 16.04 -128.00 -2.05 -52.23 16 16 N -1.10 -35.99 5.80 -187.50 -1.09 -37.08 16 17 C 0.13 4.38 5.27 86.38 0.45 4.83 16 18 C 0.08 2.06 2.44 44.92 0.11 2.17 16 19 H 0.11 2.27 8.00 -2.39 -0.02 2.25 16 20 C -0.18 -4.37 8.46 71.98 0.61 -3.76 16 21 N -0.53 -12.80 4.34 -871.16 -3.78 -16.58 16 22 C 0.05 0.95 5.12 86.33 0.44 1.39 16 23 C -0.11 -1.84 6.09 30.65 0.19 -1.66 16 24 C -0.11 -1.91 5.29 30.68 0.16 -1.75 16 25 C -0.09 -2.11 2.88 -10.74 -0.03 -2.14 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 C -0.15 -3.20 9.20 71.98 0.66 -2.54 16 28 C 0.05 1.47 3.84 86.32 0.33 1.80 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.04 1.45 8.09 -2.38 -0.02 1.43 16 31 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.08 2.75 8.10 -2.39 -0.02 2.73 16 33 H 0.08 2.47 7.67 -2.39 -0.02 2.45 16 34 H 0.01 0.74 8.13 -2.38 -0.02 0.72 16 35 H 0.02 1.04 6.84 -2.39 -0.02 1.02 16 36 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.42 11.55 8.64 -96.74 -0.84 10.72 16 38 H 0.05 1.87 6.14 -2.39 -0.01 1.85 16 39 H 0.08 2.83 5.59 -2.39 -0.01 2.82 16 40 H 0.08 1.51 6.80 -2.39 -0.02 1.50 16 41 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.05 1.34 6.46 -2.39 -0.02 1.33 16 43 H 0.08 1.33 8.02 -2.39 -0.02 1.31 16 44 H 0.04 0.66 6.86 -2.39 -0.02 0.64 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 50 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 52 H 0.04 1.01 6.58 -2.39 -0.02 1.00 16 53 H 0.05 1.70 6.27 -2.39 -0.01 1.68 16 Total: -1.00 -65.94 412.87 -3.26 -69.19 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.04 Total: 33.68 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 5.32 Total: -13.24 kcal Atomic # 7 Polarization: -143.32 SS G_CDS: -6.06 Total: -149.37 kcal Atomic # 8 Polarization: -91.95 SS G_CDS: -4.24 Total: -96.20 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 113.98 SS G_CDS: -0.35 Total: 113.64 kcal Total: -65.94 -3.26 -69.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336898575.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.689 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds