Wall clock time and date at job start Wed Apr 1 2020 04:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.46999 * 2 1 4 4 C 1.46902 * 111.00312 * 297.86114 * 3 2 1 5 5 C 1.53000 * 109.47292 * 288.29646 * 4 3 2 6 6 C 1.46899 * 111.00128 * 61.81753 * 3 2 1 7 7 C 1.52994 * 109.47123 * 80.04052 * 6 3 2 8 8 H 1.08997 * 110.88853 * 56.94753 * 7 6 3 9 9 C 1.55154 * 111.00679 * 293.05984 * 7 6 3 10 10 C 1.54319 * 102.94659 * 206.42269 * 9 7 6 11 11 N 1.47027 * 107.26672 * 22.19723 * 10 9 7 12 12 S 1.65607 * 125.64495 * 181.02436 * 11 10 9 13 13 O 1.42100 * 106.39915 * 336.47983 * 12 11 10 14 14 O 1.42097 * 106.39869 * 203.56310 * 12 11 10 15 15 N 1.65592 * 107.21849 * 90.02193 * 12 11 10 16 16 C 1.46509 * 119.99865 * 269.99555 * 15 12 11 17 17 C 1.52996 * 109.46932 * 265.00085 * 16 15 12 18 18 C 1.46501 * 120.00339 * 89.99866 * 15 12 11 19 19 C 1.50708 * 109.46850 * 94.99493 * 18 15 12 20 20 H 1.07996 * 119.99869 * 359.72919 * 19 18 15 21 21 C 1.37875 * 119.99474 * 180.02562 * 19 18 15 22 22 N 1.31514 * 119.99879 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00332 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47048 * 90.00132 * 23 21 19 25 25 H 1.48496 * 109.46899 * 209.99961 * 23 21 19 26 26 H 1.48501 * 109.46875 * 329.99897 * 23 21 19 27 27 C 1.47417 * 108.70602 * 1.28399 * 11 10 9 28 28 H 1.09002 * 109.47128 * 64.60135 * 1 2 3 29 29 H 1.08996 * 109.47363 * 184.60268 * 1 2 3 30 30 H 1.08999 * 109.46960 * 304.60104 * 1 2 3 31 31 H 1.09003 * 109.46668 * 240.00265 * 2 1 3 32 32 H 1.08995 * 109.46848 * 120.00096 * 2 1 3 33 33 H 1.09010 * 109.46944 * 48.28918 * 4 3 2 34 34 H 1.08995 * 109.47376 * 168.28907 * 4 3 2 35 35 H 1.09006 * 109.47079 * 65.89310 * 5 4 3 36 36 H 1.08998 * 109.47609 * 185.89815 * 5 4 3 37 37 H 1.09003 * 109.46622 * 305.89862 * 5 4 3 38 38 H 1.09003 * 109.46791 * 320.03709 * 6 3 2 39 39 H 1.09001 * 109.47191 * 200.04309 * 6 3 2 40 40 H 1.09003 * 110.71712 * 88.05872 * 9 7 6 41 41 H 1.09000 * 110.72444 * 324.79276 * 9 7 6 42 42 H 1.09000 * 109.88771 * 262.77768 * 10 9 7 43 43 H 1.09005 * 110.00933 * 141.67981 * 10 9 7 44 44 H 1.09001 * 109.46870 * 25.00498 * 16 15 12 45 45 H 1.08999 * 109.46849 * 145.00050 * 16 15 12 46 46 H 1.08997 * 109.46928 * 60.00529 * 17 16 15 47 47 H 1.09002 * 109.46443 * 179.97438 * 17 16 15 48 48 H 1.08995 * 109.47301 * 299.99816 * 17 16 15 49 49 H 1.08999 * 109.46560 * 335.00329 * 18 15 12 50 50 H 1.08992 * 109.47477 * 214.99839 * 18 15 12 51 51 H 0.96995 * 120.00348 * 180.02562 * 22 21 19 52 52 H 1.08999 * 110.36635 * 94.48046 * 27 11 10 53 53 H 1.09001 * 110.36746 * 216.80898 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5909 2.0950 -1.2124 5 6 2.3712 1.5647 -2.4169 6 6 1.5845 2.0973 1.2088 7 6 2.4967 1.7216 2.3783 8 1 3.5384 1.9415 2.1448 9 6 2.3167 0.2305 2.7673 10 6 2.7142 0.2118 4.2583 11 7 2.5546 1.5810 4.7697 12 16 2.8811 2.0781 6.3154 13 8 2.7918 0.9214 7.1360 14 8 2.1038 3.2475 6.5332 15 7 4.4660 2.5563 6.3520 16 6 5.5163 1.5871 6.6743 17 6 5.8391 1.6628 8.1679 18 6 4.8179 3.9486 6.0622 19 6 4.9304 4.7175 7.3535 20 1 4.7528 4.2199 8.2955 21 6 5.2541 6.0575 7.3319 22 7 5.3528 6.7284 8.4587 23 14 5.5525 6.9202 5.7021 24 1 4.2724 7.4759 5.1945 25 1 6.5280 8.0227 5.8970 26 1 6.0944 5.9477 4.7193 27 6 2.0500 2.4367 3.6805 28 1 -0.3633 0.4408 -0.9284 29 1 -0.3634 -1.0243 0.0825 30 1 -0.3633 0.5836 0.8459 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 0.5246 1.9330 -1.3705 34 1 1.7830 3.1616 -1.0960 35 1 2.0989 0.5247 -2.5970 36 1 2.1304 2.1609 -3.2971 37 1 3.4403 1.6306 -2.2148 38 1 0.5575 1.8185 1.4449 39 1 1.6387 3.1722 1.0365 40 1 2.9830 -0.4038 2.1826 41 1 1.2791 -0.0786 2.6409 42 1 3.7524 -0.1038 4.3613 43 1 2.0639 -0.4678 4.8092 44 1 5.1722 0.5828 6.4273 45 1 6.4119 1.8166 6.0970 46 1 4.9435 1.4333 8.7452 47 1 6.6202 0.9413 8.4077 48 1 6.1833 2.6670 8.4149 49 1 4.0442 4.3967 5.4389 50 1 5.7720 3.9803 5.5362 51 1 5.5801 7.6712 8.4436 52 1 0.9631 2.5054 3.7247 53 1 2.4965 3.4293 3.7400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337074788.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:25 Heat of formation + Delta-G solvation = -85.805316 kcal Electronic energy + Delta-G solvation = -30941.284439 eV Core-core repulsion = 26974.160812 eV Total energy + Delta-G solvation = -3967.123626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.37432 -38.38143 -38.35960 -37.79009 -36.89057 -34.60365 -33.21922 -32.02943 -31.75110 -30.65699 -29.39319 -29.09873 -25.91670 -24.69959 -24.32366 -23.46200 -22.96801 -21.42636 -20.68724 -19.97192 -19.10726 -18.64753 -18.39186 -17.46803 -17.13786 -16.62943 -16.44029 -16.20509 -15.54543 -15.25904 -15.02658 -14.77444 -14.58812 -14.53424 -14.49535 -14.32940 -14.00477 -13.84651 -13.83137 -13.59140 -13.24476 -13.22221 -13.08154 -13.04116 -12.92843 -12.88698 -12.76392 -12.73931 -12.49443 -12.34078 -12.19607 -12.00621 -11.95749 -11.74385 -11.69440 -11.58383 -11.50077 -11.46078 -11.07402 -10.75046 -10.04738 -9.79082 -9.11857 -8.25551 -6.30089 -0.45593 1.37132 1.40628 1.48941 2.01187 2.37023 2.55961 2.94502 3.07555 3.25932 3.61256 3.78295 3.89528 4.02139 4.11717 4.21873 4.33821 4.38006 4.41800 4.43112 4.45950 4.48461 4.55136 4.55742 4.62084 4.67154 4.73067 4.76204 4.78848 4.84465 4.90696 4.91178 4.94563 4.99967 5.04474 5.06507 5.16428 5.17463 5.20955 5.24470 5.34051 5.37752 5.43334 5.46500 5.51607 5.55358 5.55770 5.85825 6.22907 6.28008 6.34733 6.73450 7.31963 8.91657 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.003429 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.968224 B = 8163.483596 C = 9564.116292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.030 3.970 3 N -0.540 5.540 4 C 0.043 3.957 5 C -0.142 4.142 6 C 0.059 3.941 7 C -0.078 4.078 8 H 0.090 0.910 9 C -0.111 4.111 10 C 0.109 3.891 11 N -1.018 6.018 12 S 2.803 3.197 13 O -1.004 7.004 14 O -1.008 7.008 15 N -0.994 5.994 16 C 0.128 3.872 17 C -0.171 4.171 18 C 0.237 3.763 19 C -0.534 4.534 20 H 0.034 0.966 21 C 0.006 3.994 22 N -0.950 5.950 23 Si 0.939 3.061 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.229 1.229 27 C 0.116 3.884 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.030 0.970 47 H 0.088 0.912 48 H 0.045 0.955 49 H 0.029 0.971 50 H 0.055 0.945 51 H 0.266 0.734 52 H 0.072 0.928 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.633 -16.363 -24.048 29.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.098 4.098 3 N -0.263 5.263 4 C -0.085 4.085 5 C -0.200 4.200 6 C -0.070 4.070 7 C -0.099 4.099 8 H 0.109 0.891 9 C -0.149 4.149 10 C -0.016 4.016 11 N -0.860 5.860 12 S 2.813 3.187 13 O -0.988 6.988 14 O -0.992 6.992 15 N -0.834 5.834 16 C 0.003 3.997 17 C -0.230 4.230 18 C 0.112 3.888 19 C -0.573 4.573 20 H 0.052 0.948 21 C -0.191 4.191 22 N -0.590 5.590 23 Si 0.762 3.238 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.151 1.151 27 C -0.009 4.009 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.114 0.886 46 H 0.049 0.951 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.047 0.953 50 H 0.073 0.927 51 H 0.075 0.925 52 H 0.090 0.910 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.657 -16.191 -23.153 28.813 hybrid contribution -0.658 1.141 0.216 1.335 sum -6.316 -15.051 -22.936 28.151 Atomic orbital electron populations 1.22412 0.98266 1.02763 1.01662 1.22618 0.93032 0.89920 1.04189 1.62151 1.59857 1.02804 1.01522 1.22200 0.97866 0.98183 0.90219 1.21720 1.00590 1.01076 0.96578 1.22098 0.96886 0.98620 0.89373 1.22287 1.01001 0.95073 0.91544 0.89117 1.22880 1.03057 0.96559 0.92416 1.22032 1.01989 0.81097 0.96435 1.58984 1.80455 1.18484 1.28092 1.01040 0.73080 0.71714 0.72825 1.93502 1.87065 1.51914 1.66298 1.93559 1.69905 1.50871 1.84843 1.57599 1.24447 1.17024 1.84309 1.21287 0.91695 0.90797 0.95912 1.22226 1.01189 1.02342 0.97262 1.19201 0.97122 0.77542 0.94931 1.21727 1.46808 0.95111 0.93685 0.94750 1.25903 0.94617 0.98061 1.00541 1.70071 1.50377 1.09648 1.28953 0.85843 0.78758 0.79229 0.80005 1.19591 1.20654 1.15114 1.22204 0.99169 0.93636 0.85934 0.92769 0.91322 0.92672 0.90436 0.88504 0.94063 0.91307 0.92632 0.91753 0.92618 0.92819 0.90807 0.87545 0.89670 0.90648 0.91404 0.89120 0.88633 0.95058 0.89367 0.93544 0.95309 0.92690 0.92516 0.91008 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.98 9.31 71.98 0.67 -1.31 16 2 C 0.03 0.32 5.50 86.30 0.47 0.80 16 3 N -0.54 -7.29 4.57 -896.21 -4.10 -11.38 16 4 C 0.04 0.53 5.53 86.30 0.48 1.01 16 5 C -0.14 -1.54 9.84 71.98 0.71 -0.84 16 6 C 0.06 0.87 4.59 86.30 0.40 1.27 16 7 C -0.08 -1.36 3.31 -9.33 -0.03 -1.39 16 8 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 9 C -0.11 -1.58 4.42 31.78 0.14 -1.44 16 10 C 0.11 2.24 6.99 86.73 0.61 2.85 16 11 N -1.02 -29.17 3.75 -506.01 -1.90 -31.07 16 12 S 2.80 112.64 6.26 -56.49 -0.35 112.29 16 13 O -1.00 -42.42 16.69 -128.00 -2.14 -44.56 16 14 O -1.01 -49.89 16.69 -128.00 -2.14 -52.03 16 15 N -0.99 -39.97 2.86 -519.83 -1.48 -41.45 16 16 C 0.13 4.22 6.09 86.38 0.53 4.75 16 17 C -0.17 -6.33 9.84 71.98 0.71 -5.62 16 18 C 0.24 10.90 4.19 85.64 0.36 11.26 16 19 C -0.53 -30.99 8.96 25.60 0.23 -30.76 16 20 H 0.03 2.25 7.15 -2.91 -0.02 2.23 16 21 C 0.01 0.36 5.47 84.65 0.46 0.82 16 22 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 23 Si 0.94 42.93 27.47 68.60 1.88 44.81 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.23 -9.03 6.54 99.48 0.65 -8.38 16 27 C 0.12 2.86 6.45 86.94 0.56 3.42 16 28 H 0.05 0.58 6.45 -2.39 -0.02 0.56 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.65 5.90 -2.39 -0.01 0.63 16 31 H 0.08 0.79 6.74 -2.39 -0.02 0.77 16 32 H 0.10 0.95 3.96 -2.39 -0.01 0.94 16 33 H 0.04 0.49 5.94 -2.38 -0.01 0.47 16 34 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16 35 H 0.05 0.56 6.96 -2.38 -0.02 0.54 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 0.76 5.52 -2.39 -0.01 0.74 16 39 H 0.07 1.13 7.57 -2.39 -0.02 1.12 16 40 H 0.11 1.13 6.93 -2.39 -0.02 1.11 16 41 H 0.08 1.05 7.35 -2.39 -0.02 1.03 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.09 2.46 7.61 -2.39 -0.02 2.44 16 45 H 0.10 2.69 8.00 -2.39 -0.02 2.67 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.05 2.04 6.59 -2.39 -0.02 2.02 16 49 H 0.03 1.32 7.03 -2.39 -0.02 1.30 16 50 H 0.06 2.30 7.06 -2.39 -0.02 2.28 16 51 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 52 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 53 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -77.65 407.53 -2.81 -80.46 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.82 Total: 18.36 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 6.29 Total: -15.19 kcal Atomic # 7 Polarization: -136.97 SS G_CDS: -7.18 Total: -144.15 kcal Atomic # 8 Polarization: -92.31 SS G_CDS: -4.27 Total: -96.58 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.81 kcal Atomic # 16 Polarization: 112.64 SS G_CDS: -0.35 Total: 112.29 kcal Total: -77.65 -2.81 -80.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337074788.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.343 kcal (2) G-P(sol) polarization free energy of solvation -77.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds