Wall clock time and date at job start Wed Apr 1 2020 04:39:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46901 * 109.46999 * 2 1
4 4 C 1.46902 * 111.00312 * 297.86114 * 3 2 1
5 5 C 1.53000 * 109.47292 * 288.29646 * 4 3 2
6 6 C 1.46899 * 111.00128 * 61.81753 * 3 2 1
7 7 C 1.52994 * 109.47123 * 80.04052 * 6 3 2
8 8 H 1.08997 * 110.88853 * 56.94753 * 7 6 3
9 9 C 1.55154 * 111.00679 * 293.05984 * 7 6 3
10 10 C 1.54319 * 102.94659 * 206.42269 * 9 7 6
11 11 N 1.47027 * 107.26672 * 22.19723 * 10 9 7
12 12 S 1.65607 * 125.64495 * 181.02436 * 11 10 9
13 13 O 1.42100 * 106.39915 * 336.47983 * 12 11 10
14 14 O 1.42097 * 106.39869 * 203.56310 * 12 11 10
15 15 N 1.65592 * 107.21849 * 90.02193 * 12 11 10
16 16 C 1.46509 * 119.99865 * 269.99555 * 15 12 11
17 17 C 1.52996 * 109.46932 * 265.00085 * 16 15 12
18 18 C 1.46501 * 120.00339 * 89.99866 * 15 12 11
19 19 C 1.50708 * 109.46850 * 94.99493 * 18 15 12
20 20 H 1.07996 * 119.99869 * 359.72919 * 19 18 15
21 21 C 1.37875 * 119.99474 * 180.02562 * 19 18 15
22 22 N 1.31514 * 119.99879 * 180.02562 * 21 19 18
23 23 Si 1.86803 * 120.00332 * 0.02562 * 21 19 18
24 24 H 1.48497 * 109.47048 * 90.00132 * 23 21 19
25 25 H 1.48496 * 109.46899 * 209.99961 * 23 21 19
26 26 H 1.48501 * 109.46875 * 329.99897 * 23 21 19
27 27 C 1.47417 * 108.70602 * 1.28399 * 11 10 9
28 28 H 1.09002 * 109.47128 * 64.60135 * 1 2 3
29 29 H 1.08996 * 109.47363 * 184.60268 * 1 2 3
30 30 H 1.08999 * 109.46960 * 304.60104 * 1 2 3
31 31 H 1.09003 * 109.46668 * 240.00265 * 2 1 3
32 32 H 1.08995 * 109.46848 * 120.00096 * 2 1 3
33 33 H 1.09010 * 109.46944 * 48.28918 * 4 3 2
34 34 H 1.08995 * 109.47376 * 168.28907 * 4 3 2
35 35 H 1.09006 * 109.47079 * 65.89310 * 5 4 3
36 36 H 1.08998 * 109.47609 * 185.89815 * 5 4 3
37 37 H 1.09003 * 109.46622 * 305.89862 * 5 4 3
38 38 H 1.09003 * 109.46791 * 320.03709 * 6 3 2
39 39 H 1.09001 * 109.47191 * 200.04309 * 6 3 2
40 40 H 1.09003 * 110.71712 * 88.05872 * 9 7 6
41 41 H 1.09000 * 110.72444 * 324.79276 * 9 7 6
42 42 H 1.09000 * 109.88771 * 262.77768 * 10 9 7
43 43 H 1.09005 * 110.00933 * 141.67981 * 10 9 7
44 44 H 1.09001 * 109.46870 * 25.00498 * 16 15 12
45 45 H 1.08999 * 109.46849 * 145.00050 * 16 15 12
46 46 H 1.08997 * 109.46928 * 60.00529 * 17 16 15
47 47 H 1.09002 * 109.46443 * 179.97438 * 17 16 15
48 48 H 1.08995 * 109.47301 * 299.99816 * 17 16 15
49 49 H 1.08999 * 109.46560 * 335.00329 * 18 15 12
50 50 H 1.08992 * 109.47477 * 214.99839 * 18 15 12
51 51 H 0.96995 * 120.00348 * 180.02562 * 22 21 19
52 52 H 1.08999 * 110.36635 * 94.48046 * 27 11 10
53 53 H 1.09001 * 110.36746 * 216.80898 * 27 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.5909 2.0950 -1.2124
5 6 2.3712 1.5647 -2.4169
6 6 1.5845 2.0973 1.2088
7 6 2.4967 1.7216 2.3783
8 1 3.5384 1.9415 2.1448
9 6 2.3167 0.2305 2.7673
10 6 2.7142 0.2118 4.2583
11 7 2.5546 1.5810 4.7697
12 16 2.8811 2.0781 6.3154
13 8 2.7918 0.9214 7.1360
14 8 2.1038 3.2475 6.5332
15 7 4.4660 2.5563 6.3520
16 6 5.5163 1.5871 6.6743
17 6 5.8391 1.6628 8.1679
18 6 4.8179 3.9486 6.0622
19 6 4.9304 4.7175 7.3535
20 1 4.7528 4.2199 8.2955
21 6 5.2541 6.0575 7.3319
22 7 5.3528 6.7284 8.4587
23 14 5.5525 6.9202 5.7021
24 1 4.2724 7.4759 5.1945
25 1 6.5280 8.0227 5.8970
26 1 6.0944 5.9477 4.7193
27 6 2.0500 2.4367 3.6805
28 1 -0.3633 0.4408 -0.9284
29 1 -0.3634 -1.0243 0.0825
30 1 -0.3633 0.5836 0.8459
31 1 1.8933 -0.5138 -0.8901
32 1 1.8933 -0.5138 0.8899
33 1 0.5246 1.9330 -1.3705
34 1 1.7830 3.1616 -1.0960
35 1 2.0989 0.5247 -2.5970
36 1 2.1304 2.1609 -3.2971
37 1 3.4403 1.6306 -2.2148
38 1 0.5575 1.8185 1.4449
39 1 1.6387 3.1722 1.0365
40 1 2.9830 -0.4038 2.1826
41 1 1.2791 -0.0786 2.6409
42 1 3.7524 -0.1038 4.3613
43 1 2.0639 -0.4678 4.8092
44 1 5.1722 0.5828 6.4273
45 1 6.4119 1.8166 6.0970
46 1 4.9435 1.4333 8.7452
47 1 6.6202 0.9413 8.4077
48 1 6.1833 2.6670 8.4149
49 1 4.0442 4.3967 5.4389
50 1 5.7720 3.9803 5.5362
51 1 5.5801 7.6712 8.4436
52 1 0.9631 2.5054 3.7247
53 1 2.4965 3.4293 3.7400
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000337074788.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:39:25
Heat of formation + Delta-G solvation = -85.805316 kcal
Electronic energy + Delta-G solvation = -30941.284439 eV
Core-core repulsion = 26974.160812 eV
Total energy + Delta-G solvation = -3967.123626 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.203 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-40.37432 -38.38143 -38.35960 -37.79009 -36.89057 -34.60365 -33.21922 -32.02943
-31.75110 -30.65699 -29.39319 -29.09873 -25.91670 -24.69959 -24.32366 -23.46200
-22.96801 -21.42636 -20.68724 -19.97192 -19.10726 -18.64753 -18.39186 -17.46803
-17.13786 -16.62943 -16.44029 -16.20509 -15.54543 -15.25904 -15.02658 -14.77444
-14.58812 -14.53424 -14.49535 -14.32940 -14.00477 -13.84651 -13.83137 -13.59140
-13.24476 -13.22221 -13.08154 -13.04116 -12.92843 -12.88698 -12.76392 -12.73931
-12.49443 -12.34078 -12.19607 -12.00621 -11.95749 -11.74385 -11.69440 -11.58383
-11.50077 -11.46078 -11.07402 -10.75046 -10.04738 -9.79082 -9.11857 -8.25551
-6.30089 -0.45593 1.37132 1.40628 1.48941 2.01187 2.37023 2.55961
2.94502 3.07555 3.25932 3.61256 3.78295 3.89528 4.02139 4.11717
4.21873 4.33821 4.38006 4.41800 4.43112 4.45950 4.48461 4.55136
4.55742 4.62084 4.67154 4.73067 4.76204 4.78848 4.84465 4.90696
4.91178 4.94563 4.99967 5.04474 5.06507 5.16428 5.17463 5.20955
5.24470 5.34051 5.37752 5.43334 5.46500 5.51607 5.55358 5.55770
5.85825 6.22907 6.28008 6.34733 6.73450 7.31963 8.91657
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012262 B = 0.003429 C = 0.002927
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2282.968224 B = 8163.483596 C = 9564.116292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.030 3.970
3 N -0.540 5.540
4 C 0.043 3.957
5 C -0.142 4.142
6 C 0.059 3.941
7 C -0.078 4.078
8 H 0.090 0.910
9 C -0.111 4.111
10 C 0.109 3.891
11 N -1.018 6.018
12 S 2.803 3.197
13 O -1.004 7.004
14 O -1.008 7.008
15 N -0.994 5.994
16 C 0.128 3.872
17 C -0.171 4.171
18 C 0.237 3.763
19 C -0.534 4.534
20 H 0.034 0.966
21 C 0.006 3.994
22 N -0.950 5.950
23 Si 0.939 3.061
24 H -0.271 1.271
25 H -0.281 1.281
26 H -0.229 1.229
27 C 0.116 3.884
28 H 0.053 0.947
29 H 0.068 0.932
30 H 0.054 0.946
31 H 0.077 0.923
32 H 0.097 0.903
33 H 0.041 0.959
34 H 0.068 0.932
35 H 0.055 0.945
36 H 0.064 0.936
37 H 0.055 0.945
38 H 0.054 0.946
39 H 0.073 0.927
40 H 0.106 0.894
41 H 0.085 0.915
42 H 0.075 0.925
43 H 0.068 0.932
44 H 0.091 0.909
45 H 0.095 0.905
46 H 0.030 0.970
47 H 0.088 0.912
48 H 0.045 0.955
49 H 0.029 0.971
50 H 0.055 0.945
51 H 0.266 0.734
52 H 0.072 0.928
53 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.633 -16.363 -24.048 29.628
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.251 4.251
2 C -0.098 4.098
3 N -0.263 5.263
4 C -0.085 4.085
5 C -0.200 4.200
6 C -0.070 4.070
7 C -0.099 4.099
8 H 0.109 0.891
9 C -0.149 4.149
10 C -0.016 4.016
11 N -0.860 5.860
12 S 2.813 3.187
13 O -0.988 6.988
14 O -0.992 6.992
15 N -0.834 5.834
16 C 0.003 3.997
17 C -0.230 4.230
18 C 0.112 3.888
19 C -0.573 4.573
20 H 0.052 0.948
21 C -0.191 4.191
22 N -0.590 5.590
23 Si 0.762 3.238
24 H -0.196 1.196
25 H -0.207 1.207
26 H -0.151 1.151
27 C -0.009 4.009
28 H 0.072 0.928
29 H 0.087 0.913
30 H 0.073 0.927
31 H 0.096 0.904
32 H 0.115 0.885
33 H 0.059 0.941
34 H 0.087 0.913
35 H 0.074 0.926
36 H 0.082 0.918
37 H 0.074 0.926
38 H 0.072 0.928
39 H 0.092 0.908
40 H 0.125 0.875
41 H 0.103 0.897
42 H 0.094 0.906
43 H 0.086 0.914
44 H 0.109 0.891
45 H 0.114 0.886
46 H 0.049 0.951
47 H 0.106 0.894
48 H 0.065 0.935
49 H 0.047 0.953
50 H 0.073 0.927
51 H 0.075 0.925
52 H 0.090 0.910
53 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -5.657 -16.191 -23.153 28.813
hybrid contribution -0.658 1.141 0.216 1.335
sum -6.316 -15.051 -22.936 28.151
Atomic orbital electron populations
1.22412 0.98266 1.02763 1.01662 1.22618 0.93032 0.89920 1.04189
1.62151 1.59857 1.02804 1.01522 1.22200 0.97866 0.98183 0.90219
1.21720 1.00590 1.01076 0.96578 1.22098 0.96886 0.98620 0.89373
1.22287 1.01001 0.95073 0.91544 0.89117 1.22880 1.03057 0.96559
0.92416 1.22032 1.01989 0.81097 0.96435 1.58984 1.80455 1.18484
1.28092 1.01040 0.73080 0.71714 0.72825 1.93502 1.87065 1.51914
1.66298 1.93559 1.69905 1.50871 1.84843 1.57599 1.24447 1.17024
1.84309 1.21287 0.91695 0.90797 0.95912 1.22226 1.01189 1.02342
0.97262 1.19201 0.97122 0.77542 0.94931 1.21727 1.46808 0.95111
0.93685 0.94750 1.25903 0.94617 0.98061 1.00541 1.70071 1.50377
1.09648 1.28953 0.85843 0.78758 0.79229 0.80005 1.19591 1.20654
1.15114 1.22204 0.99169 0.93636 0.85934 0.92769 0.91322 0.92672
0.90436 0.88504 0.94063 0.91307 0.92632 0.91753 0.92618 0.92819
0.90807 0.87545 0.89670 0.90648 0.91404 0.89120 0.88633 0.95058
0.89367 0.93544 0.95309 0.92690 0.92516 0.91008 0.91788
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.98 9.31 71.98 0.67 -1.31 16
2 C 0.03 0.32 5.50 86.30 0.47 0.80 16
3 N -0.54 -7.29 4.57 -896.21 -4.10 -11.38 16
4 C 0.04 0.53 5.53 86.30 0.48 1.01 16
5 C -0.14 -1.54 9.84 71.98 0.71 -0.84 16
6 C 0.06 0.87 4.59 86.30 0.40 1.27 16
7 C -0.08 -1.36 3.31 -9.33 -0.03 -1.39 16
8 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
9 C -0.11 -1.58 4.42 31.78 0.14 -1.44 16
10 C 0.11 2.24 6.99 86.73 0.61 2.85 16
11 N -1.02 -29.17 3.75 -506.01 -1.90 -31.07 16
12 S 2.80 112.64 6.26 -56.49 -0.35 112.29 16
13 O -1.00 -42.42 16.69 -128.00 -2.14 -44.56 16
14 O -1.01 -49.89 16.69 -128.00 -2.14 -52.03 16
15 N -0.99 -39.97 2.86 -519.83 -1.48 -41.45 16
16 C 0.13 4.22 6.09 86.38 0.53 4.75 16
17 C -0.17 -6.33 9.84 71.98 0.71 -5.62 16
18 C 0.24 10.90 4.19 85.64 0.36 11.26 16
19 C -0.53 -30.99 8.96 25.60 0.23 -30.76 16
20 H 0.03 2.25 7.15 -2.91 -0.02 2.23 16
21 C 0.01 0.36 5.47 84.65 0.46 0.82 16
22 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16
23 Si 0.94 42.93 27.47 68.60 1.88 44.81 16
24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16
25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16
26 H -0.23 -9.03 6.54 99.48 0.65 -8.38 16
27 C 0.12 2.86 6.45 86.94 0.56 3.42 16
28 H 0.05 0.58 6.45 -2.39 -0.02 0.56 16
29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
30 H 0.05 0.65 5.90 -2.39 -0.01 0.63 16
31 H 0.08 0.79 6.74 -2.39 -0.02 0.77 16
32 H 0.10 0.95 3.96 -2.39 -0.01 0.94 16
33 H 0.04 0.49 5.94 -2.38 -0.01 0.47 16
34 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16
35 H 0.05 0.56 6.96 -2.38 -0.02 0.54 16
36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
38 H 0.05 0.76 5.52 -2.39 -0.01 0.74 16
39 H 0.07 1.13 7.57 -2.39 -0.02 1.12 16
40 H 0.11 1.13 6.93 -2.39 -0.02 1.11 16
41 H 0.08 1.05 7.35 -2.39 -0.02 1.03 16
42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
43 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16
44 H 0.09 2.46 7.61 -2.39 -0.02 2.44 16
45 H 0.10 2.69 8.00 -2.39 -0.02 2.67 16
46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16
47 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16
48 H 0.05 2.04 6.59 -2.39 -0.02 2.02 16
49 H 0.03 1.32 7.03 -2.39 -0.02 1.30 16
50 H 0.06 2.30 7.06 -2.39 -0.02 2.28 16
51 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16
52 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16
53 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
Total: -1.00 -77.65 407.53 -2.81 -80.46
By element:
Atomic # 1 Polarization: 17.53 SS G_CDS: 0.82 Total: 18.36 kcal
Atomic # 6 Polarization: -21.48 SS G_CDS: 6.29 Total: -15.19 kcal
Atomic # 7 Polarization: -136.97 SS G_CDS: -7.18 Total: -144.15 kcal
Atomic # 8 Polarization: -92.31 SS G_CDS: -4.27 Total: -96.58 kcal
Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.81 kcal
Atomic # 16 Polarization: 112.64 SS G_CDS: -0.35 Total: 112.29 kcal
Total: -77.65 -2.81 -80.46 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000337074788.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.343 kcal
(2) G-P(sol) polarization free energy of solvation -77.650 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.993 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.812 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.462 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.805 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds