Wall clock time and date at job start Wed Apr 1 2020 04:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.46889 * 2 1 4 4 C 1.46897 * 111.00199 * 297.00513 * 3 2 1 5 5 C 1.53001 * 109.47362 * 288.24561 * 4 3 2 6 6 C 1.46897 * 110.99846 * 60.96043 * 3 2 1 7 7 C 1.53001 * 109.47478 * 66.04480 * 6 3 2 8 8 H 1.09003 * 110.91651 * 302.55451 * 7 6 3 9 9 C 1.55158 * 111.00324 * 66.45101 * 7 6 3 10 10 C 1.54324 * 103.10147 * 153.66861 * 9 7 6 11 11 N 1.47019 * 107.26984 * 337.71792 * 10 9 7 12 12 S 1.65608 * 125.64474 * 178.97552 * 11 10 9 13 13 O 1.42098 * 106.39934 * 203.51418 * 12 11 10 14 14 O 1.42097 * 106.40345 * 336.43901 * 12 11 10 15 15 N 1.65604 * 107.21735 * 89.97853 * 12 11 10 16 16 C 1.46499 * 120.00053 * 269.99992 * 15 12 11 17 17 C 1.53001 * 109.47197 * 94.99330 * 16 15 12 18 18 C 1.46494 * 120.00230 * 89.99481 * 15 12 11 19 19 C 1.50700 * 109.47066 * 94.99867 * 18 15 12 20 20 H 1.08001 * 119.99654 * 0.02562 * 19 18 15 21 21 C 1.37879 * 120.00027 * 179.97438 * 19 18 15 22 22 N 1.31518 * 119.99860 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00245 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47326 * 89.99290 * 23 21 19 25 25 H 1.48499 * 109.47236 * 210.00159 * 23 21 19 26 26 H 1.48502 * 109.46827 * 329.99241 * 23 21 19 27 27 C 1.47424 * 108.70508 * 358.94125 * 11 10 9 28 28 H 1.09001 * 109.47225 * 61.29158 * 1 2 3 29 29 H 1.09003 * 109.46973 * 181.28624 * 1 2 3 30 30 H 1.08995 * 109.47421 * 301.28575 * 1 2 3 31 31 H 1.09001 * 109.46860 * 240.00355 * 2 1 3 32 32 H 1.08992 * 109.47002 * 120.00164 * 2 1 3 33 33 H 1.09006 * 109.47166 * 48.24489 * 4 3 2 34 34 H 1.09000 * 109.46869 * 168.24303 * 4 3 2 35 35 H 1.08995 * 109.47201 * 179.84025 * 5 4 3 36 36 H 1.09000 * 109.46626 * 299.84704 * 5 4 3 37 37 H 1.09001 * 109.46489 * 59.84149 * 5 4 3 38 38 H 1.09000 * 109.47324 * 306.03997 * 6 3 2 39 39 H 1.08998 * 109.47104 * 186.04405 * 6 3 2 40 40 H 1.09005 * 110.72025 * 35.21375 * 9 7 6 41 41 H 1.08997 * 110.72258 * 272.11987 * 9 7 6 42 42 H 1.08997 * 109.88191 * 97.14041 * 10 9 7 43 43 H 1.09001 * 109.87952 * 218.14572 * 10 9 7 44 44 H 1.08990 * 109.47340 * 215.00023 * 16 15 12 45 45 H 1.09004 * 109.46634 * 335.00037 * 16 15 12 46 46 H 1.08998 * 109.46794 * 179.97438 * 17 16 15 47 47 H 1.08996 * 109.47805 * 300.00233 * 17 16 15 48 48 H 1.09004 * 109.46751 * 60.00778 * 17 16 15 49 49 H 1.09001 * 109.47746 * 214.99939 * 18 15 12 50 50 H 1.09002 * 109.47188 * 335.00109 * 18 15 12 51 51 H 0.96993 * 120.00042 * 179.97438 * 22 21 19 52 52 H 1.09001 * 110.36161 * 142.96656 * 27 11 10 53 53 H 1.08994 * 110.36728 * 265.18086 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6080 2.0889 -1.2219 5 6 2.4060 1.5535 -2.4124 6 6 1.5674 2.1031 1.1990 7 6 2.2187 1.4868 2.4387 8 1 1.9858 0.4246 2.5133 9 6 3.7525 1.7210 2.4357 10 6 4.1146 1.6871 3.9355 11 7 2.8892 1.9949 4.6873 12 16 2.7587 2.0551 6.3371 13 8 1.3886 1.8305 6.6396 14 8 3.8105 1.2505 6.8525 15 7 3.0906 3.6105 6.7987 16 6 4.4667 4.0041 7.1109 17 6 5.1146 4.6215 5.8699 18 6 2.0081 4.5928 6.8948 19 6 1.5135 4.6579 8.3169 20 1 1.9612 4.0305 9.0735 21 6 0.4903 5.5191 8.6523 22 7 0.0584 5.5755 9.8932 23 14 -0.2834 6.6047 7.3438 24 1 -1.4242 5.8891 6.7180 25 1 -0.7695 7.8617 7.9675 26 1 0.7286 6.9265 6.3058 27 6 1.7963 2.2420 3.7293 28 1 -0.3634 0.4936 -0.9013 29 1 -0.3633 -1.0274 0.0231 30 1 -0.3634 0.5336 0.8782 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5442 1.9254 -1.3945 34 1 1.7977 3.1562 -1.1077 35 1 2.0986 2.0738 -3.3194 36 1 3.4696 1.7194 -2.2409 37 1 2.2184 0.4856 -2.5247 38 1 0.4833 2.0258 1.2817 39 1 1.8520 3.1526 1.1229 40 1 3.9936 2.6918 2.0025 41 1 4.2634 0.9226 1.8975 42 1 4.4770 0.6956 4.2070 43 1 4.8804 2.4328 4.1488 44 1 4.4610 4.7349 7.9195 45 1 5.0348 3.1261 7.4186 46 1 6.1383 4.9147 6.1024 47 1 5.1203 3.8907 5.0613 48 1 4.5465 5.4994 5.5622 49 1 2.3787 5.5727 6.5939 50 1 1.1895 4.2968 6.2387 51 1 -0.6611 6.1815 10.1292 52 1 0.8579 1.8414 4.1129 53 1 1.6994 3.3095 3.5313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337074789.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:28 Heat of formation + Delta-G solvation = -92.069183 kcal Electronic energy + Delta-G solvation = -30911.722237 eV Core-core repulsion = 26944.326989 eV Total energy + Delta-G solvation = -3967.395248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.22413 -38.47718 -38.39184 -37.77169 -36.92511 -34.69643 -33.20111 -32.05181 -31.85200 -30.46759 -29.43442 -28.95670 -25.84962 -24.72518 -24.62555 -23.31651 -22.97251 -21.55476 -20.38312 -19.82417 -19.20313 -18.78037 -18.27105 -17.65349 -17.07598 -16.85381 -16.36150 -16.15237 -15.78223 -15.16203 -15.01670 -14.86746 -14.75836 -14.56812 -14.35612 -14.18200 -14.06769 -13.90250 -13.71157 -13.54426 -13.46854 -13.26008 -13.14112 -13.03401 -13.01174 -12.78445 -12.69323 -12.57622 -12.39717 -12.22575 -12.20021 -12.07087 -11.99134 -11.86790 -11.78781 -11.71508 -11.58577 -11.44838 -11.14792 -10.79358 -10.00199 -9.80563 -9.12620 -8.29910 -6.35913 -0.46316 1.35170 1.39611 1.48102 1.99287 2.34563 2.53660 2.93064 3.03786 3.24918 3.64763 3.80144 3.89951 3.93973 4.10543 4.27345 4.32592 4.36405 4.40317 4.41185 4.43233 4.48062 4.52103 4.56724 4.62975 4.65397 4.70811 4.74894 4.77617 4.86028 4.91502 4.97387 4.99231 5.01912 5.07550 5.09409 5.16669 5.18500 5.21297 5.24615 5.32021 5.38706 5.44573 5.47072 5.49645 5.50583 5.52917 5.83454 6.19996 6.24704 6.30094 6.66731 7.26973 8.87904 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.003288 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.808805 B = 8513.156160 C = 9400.916497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 N -0.534 5.534 4 C 0.043 3.957 5 C -0.141 4.141 6 C 0.064 3.936 7 C -0.083 4.083 8 H 0.082 0.918 9 C -0.092 4.092 10 C 0.106 3.894 11 N -1.016 6.016 12 S 2.803 3.197 13 O -1.008 7.008 14 O -1.008 7.008 15 N -0.993 5.993 16 C 0.107 3.893 17 C -0.162 4.162 18 C 0.240 3.760 19 C -0.543 4.543 20 H 0.025 0.975 21 C 0.006 3.994 22 N -0.949 5.949 23 Si 0.944 3.056 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.227 1.227 27 C 0.113 3.887 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.031 0.969 51 H 0.268 0.732 52 H 0.063 0.937 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 -5.792 -28.216 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.083 4.083 3 N -0.257 5.257 4 C -0.084 4.084 5 C -0.199 4.199 6 C -0.064 4.064 7 C -0.104 4.104 8 H 0.101 0.899 9 C -0.131 4.131 10 C -0.018 4.018 11 N -0.858 5.858 12 S 2.814 3.186 13 O -0.991 6.991 14 O -0.992 6.992 15 N -0.833 5.833 16 C -0.018 4.018 17 C -0.221 4.221 18 C 0.115 3.885 19 C -0.582 4.582 20 H 0.043 0.957 21 C -0.192 4.192 22 N -0.590 5.590 23 Si 0.766 3.234 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.150 1.150 27 C -0.013 4.013 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.082 0.918 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.949 -6.435 -27.398 29.244 hybrid contribution -1.661 0.595 0.595 1.862 sum 6.288 -5.839 -26.802 28.143 Atomic orbital electron populations 1.22404 0.98388 1.02612 1.01757 1.22231 0.92789 0.90260 1.03058 1.62241 1.59425 1.02384 1.01681 1.22177 0.97816 0.98517 0.89928 1.21716 1.00595 1.01001 0.96594 1.22034 0.97523 0.98285 0.88601 1.22352 0.96475 0.99802 0.91747 0.89927 1.22465 0.94357 1.04108 0.92184 1.22095 0.85575 1.00910 0.93251 1.58904 1.18825 1.85449 1.22573 1.00954 0.71856 0.73130 0.72644 1.93555 1.36679 1.85357 1.83554 1.93484 1.58868 1.68019 1.78798 1.57545 1.14633 1.29267 1.81860 1.21399 0.79996 1.01043 0.99403 1.22245 1.01449 1.01434 0.96973 1.19131 0.84990 0.89573 0.94803 1.21700 1.18709 1.22696 0.95103 0.95688 1.25962 0.96661 0.98559 0.97972 1.70078 1.29123 1.39435 1.20329 0.85773 0.80009 0.77979 0.79657 1.19350 1.20401 1.14972 1.22269 0.89074 1.00971 0.88993 0.92248 0.91729 0.93066 0.89937 0.90743 0.94361 0.90761 0.91720 0.92330 0.92844 0.94100 0.89710 0.89456 0.88678 0.91794 0.90498 0.90971 0.90353 0.89382 0.91674 0.92152 0.92698 0.95103 0.92344 0.91801 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 9.28 71.98 0.67 -1.79 16 2 C 0.04 0.55 5.71 86.30 0.49 1.05 16 3 N -0.53 -6.93 4.49 -896.25 -4.03 -10.95 16 4 C 0.04 0.49 5.56 86.30 0.48 0.97 16 5 C -0.14 -1.36 9.96 71.98 0.72 -0.65 16 6 C 0.06 0.93 4.19 86.30 0.36 1.29 16 7 C -0.08 -1.45 2.92 -9.23 -0.03 -1.48 16 8 H 0.08 1.49 6.52 -2.39 -0.02 1.48 16 9 C -0.09 -1.43 6.24 31.78 0.20 -1.23 16 10 C 0.11 2.28 6.99 86.73 0.61 2.89 16 11 N -1.02 -29.46 3.76 -505.55 -1.90 -31.35 16 12 S 2.80 114.39 6.31 -56.49 -0.36 114.03 16 13 O -1.01 -50.23 16.43 -128.00 -2.10 -52.33 16 14 O -1.01 -43.54 16.27 -128.00 -2.08 -45.63 16 15 N -0.99 -40.66 2.82 -519.86 -1.47 -42.13 16 16 C 0.11 3.64 6.40 86.38 0.55 4.19 16 17 C -0.16 -3.92 10.24 71.98 0.74 -3.19 16 18 C 0.24 11.16 4.17 85.63 0.36 11.52 16 19 C -0.54 -32.11 9.94 25.60 0.25 -31.85 16 20 H 0.02 1.68 8.06 -2.91 -0.02 1.65 16 21 C 0.01 0.36 5.47 84.65 0.46 0.82 16 22 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 23 Si 0.94 42.84 27.47 68.60 1.88 44.73 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 26 H -0.23 -8.86 6.54 99.48 0.65 -8.21 16 27 C 0.11 2.76 6.59 87.02 0.57 3.34 16 28 H 0.06 0.72 6.30 -2.39 -0.02 0.71 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.77 6.23 -2.39 -0.01 0.75 16 31 H 0.08 0.91 6.58 -2.39 -0.02 0.90 16 32 H 0.07 1.00 6.40 -2.39 -0.02 0.98 16 33 H 0.04 0.44 5.91 -2.38 -0.01 0.43 16 34 H 0.07 0.81 7.81 -2.39 -0.02 0.80 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.05 0.52 6.70 -2.39 -0.02 0.50 16 38 H 0.04 0.63 6.00 -2.39 -0.01 0.62 16 39 H 0.08 1.15 7.83 -2.39 -0.02 1.13 16 40 H 0.09 1.18 8.01 -2.38 -0.02 1.16 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.47 5.64 -2.39 -0.01 1.46 16 44 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16 45 H 0.08 2.63 6.91 -2.39 -0.02 2.61 16 46 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 1.39 5.64 -2.39 -0.01 1.37 16 48 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.06 2.32 7.17 -2.39 -0.02 2.30 16 50 H 0.03 1.42 7.04 -2.39 -0.02 1.40 16 51 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 52 H 0.06 1.78 7.78 -2.39 -0.02 1.76 16 53 H 0.08 1.72 8.05 -2.39 -0.02 1.70 16 Total: -1.00 -77.85 409.91 -2.49 -80.35 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.82 Total: 17.95 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 6.43 Total: -14.13 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -7.09 Total: -144.97 kcal Atomic # 8 Polarization: -93.77 SS G_CDS: -4.19 Total: -97.96 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.73 kcal Atomic # 16 Polarization: 114.39 SS G_CDS: -0.36 Total: 114.03 kcal Total: -77.85 -2.49 -80.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337074789.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.723 kcal (2) G-P(sol) polarization free energy of solvation -77.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds