Wall clock time and date at job start Wed Apr 1 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47241 * 2 1 4 4 C 1.46503 * 119.99750 * 84.99711 * 3 2 1 5 5 C 1.50702 * 109.46750 * 83.80791 * 4 3 2 6 6 H 1.07993 * 119.99938 * 4.49494 * 5 4 3 7 7 C 1.37876 * 119.99611 * 184.49285 * 5 4 3 8 8 N 1.31511 * 120.00615 * 5.12649 * 7 5 4 9 9 Si 1.86807 * 119.99900 * 185.12511 * 7 5 4 10 10 H 1.48497 * 109.47366 * 174.99962 * 9 7 5 11 11 H 1.48494 * 109.47086 * 295.00469 * 9 7 5 12 12 H 1.48507 * 109.46814 * 55.00375 * 9 7 5 13 13 S 1.65595 * 119.99946 * 265.00162 * 3 2 1 14 14 O 1.42097 * 106.40489 * 28.56410 * 13 3 2 15 15 O 1.42106 * 106.40183 * 161.48128 * 13 3 2 16 16 N 1.65601 * 107.21680 * 275.01804 * 13 3 2 17 17 C 1.46500 * 120.00078 * 274.67272 * 16 13 3 18 18 C 1.46501 * 119.99688 * 94.67293 * 16 13 3 19 19 C 1.53005 * 109.46831 * 95.76905 * 18 16 13 20 20 C 1.53001 * 109.46865 * 184.25927 * 19 18 16 21 21 H 1.09007 * 109.46356 * 54.69634 * 20 19 18 22 22 C 1.53040 * 109.46605 * 294.71512 * 20 19 18 23 23 C 1.53114 * 109.27721 * 180.80200 * 22 20 19 24 24 C 1.53119 * 109.16255 * 57.66095 * 23 22 20 25 25 C 1.53046 * 109.27522 * 302.34094 * 24 23 22 26 26 N 1.46843 * 109.51263 * 59.18092 * 25 24 23 27 27 C 1.46908 * 110.99093 * 174.15053 * 26 25 24 28 28 H 1.08999 * 109.47497 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47321 * 299.99800 * 1 2 3 30 30 H 1.09004 * 109.47538 * 59.99862 * 1 2 3 31 31 H 1.08993 * 109.47118 * 239.99970 * 2 1 3 32 32 H 1.08996 * 109.46738 * 120.00015 * 2 1 3 33 33 H 1.08996 * 109.47353 * 323.80741 * 4 3 2 34 34 H 1.08997 * 109.47111 * 203.80409 * 4 3 2 35 35 H 0.97003 * 119.99466 * 359.97438 * 8 7 5 36 36 H 1.08998 * 109.47007 * 90.00568 * 17 16 13 37 37 H 1.09002 * 109.46709 * 209.99978 * 17 16 13 38 38 H 1.08994 * 109.47493 * 329.99721 * 17 16 13 39 39 H 1.08998 * 109.47549 * 215.76893 * 18 16 13 40 40 H 1.08997 * 109.47113 * 335.77605 * 18 16 13 41 41 H 1.08997 * 109.47248 * 304.26296 * 19 18 16 42 42 H 1.09001 * 109.46865 * 64.26456 * 19 18 16 43 43 H 1.08999 * 109.49975 * 300.74546 * 22 20 19 44 44 H 1.09004 * 109.49990 * 60.86473 * 22 20 19 45 45 H 1.09011 * 109.51829 * 177.56002 * 23 22 20 46 46 H 1.08993 * 109.52739 * 297.68413 * 23 22 20 47 47 H 1.08996 * 109.50575 * 62.27750 * 24 23 22 48 48 H 1.09001 * 109.50699 * 182.40088 * 24 23 22 49 49 H 1.08996 * 109.46116 * 179.19330 * 25 24 23 50 50 H 1.09000 * 109.45908 * 299.17585 * 25 24 23 51 51 H 1.08992 * 109.46865 * 191.00655 * 27 26 25 52 52 H 1.08994 * 109.46753 * 311.00434 * 27 26 25 53 53 H 1.08997 * 109.46624 * 71.00520 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2640 5 6 3.4823 1.7660 1.8968 6 1 4.1833 1.1331 1.3731 7 6 3.7986 2.2607 3.1443 8 7 2.9070 2.9472 3.8250 9 14 5.4936 1.9557 3.8677 10 1 5.6220 2.6873 5.1536 11 1 5.6760 0.5013 4.1053 12 1 6.5304 2.4362 2.9192 13 16 2.4121 2.1202 -1.4286 14 8 1.5989 1.5208 -2.4280 15 8 2.4210 3.5172 -1.1687 16 7 3.9744 1.7006 -1.7832 17 6 5.0857 2.4687 -1.2164 18 6 4.2451 0.5614 -2.6635 19 6 4.4582 1.0615 -4.0938 20 6 4.6354 -0.1347 -5.0312 21 1 3.7857 -0.8091 -4.9240 22 6 5.9244 -0.8775 -4.6721 23 6 6.1077 -2.0616 -5.6254 24 6 6.1360 -1.5465 -7.0671 25 6 4.8408 -0.7843 -7.3567 26 7 4.7123 0.3385 -6.4191 27 6 3.5521 1.1747 -6.7553 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.3494 1.8255 1.9376 34 1 2.1134 3.1808 1.0730 35 1 2.0269 3.1059 3.4492 36 1 5.3783 2.0334 -0.2609 37 1 5.9326 2.4423 -1.9022 38 1 4.7733 3.5018 -1.0646 39 1 5.1414 0.0434 -2.3224 40 1 3.3982 -0.1245 -2.6410 41 1 3.5922 1.6441 -4.4078 42 1 5.3499 1.6872 -4.1307 43 1 6.7729 -0.1998 -4.7660 44 1 5.8607 -1.2421 -3.6469 45 1 7.0467 -2.5678 -5.4010 46 1 5.2795 -2.7594 -5.5030 47 1 6.9879 -0.8794 -7.1986 48 1 6.2235 -2.3891 -7.7530 49 1 4.8639 -0.4040 -8.3779 50 1 3.9902 -1.4555 -7.2382 51 1 3.5895 2.0974 -6.1765 52 1 3.5714 1.4120 -7.8190 53 1 2.6349 0.6349 -6.5200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337094600.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:00 Heat of formation + Delta-G solvation = -107.657323 kcal Electronic energy + Delta-G solvation = -31204.282133 eV Core-core repulsion = 27236.210933 eV Total energy + Delta-G solvation = -3968.071201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.39596 -38.48148 -37.87091 -37.58067 -36.97254 -34.91902 -34.51021 -33.66688 -31.50390 -29.74474 -28.12611 -27.67334 -26.84032 -25.04578 -24.69187 -23.59329 -23.35823 -21.83986 -20.61973 -20.06284 -19.04453 -18.71887 -18.32283 -17.52715 -16.87620 -16.43308 -16.08261 -15.91752 -15.61436 -15.43082 -15.32134 -15.07996 -14.98782 -14.79044 -14.56515 -14.35653 -14.09157 -13.86638 -13.80708 -13.59363 -13.34800 -13.29587 -13.13593 -13.10012 -13.02209 -12.92311 -12.81649 -12.64490 -12.61880 -12.49452 -12.29025 -12.09688 -11.92705 -11.82161 -11.67806 -11.57038 -11.30716 -11.24871 -11.01321 -10.52943 -10.03415 -9.75987 -9.29503 -8.60259 -6.35439 -0.41426 1.57624 1.65288 1.82802 1.87884 2.42409 2.60965 2.91837 3.19268 3.28920 3.66296 3.80208 3.81808 3.91590 4.01464 4.14308 4.24999 4.28503 4.30609 4.35328 4.38265 4.43593 4.51707 4.53720 4.57871 4.61167 4.65781 4.72937 4.76534 4.85875 4.86873 4.89362 4.93743 4.96940 4.98977 5.03271 5.08340 5.11959 5.15336 5.23088 5.27202 5.28305 5.33843 5.38644 5.52233 5.55860 5.82644 5.89514 6.10229 6.18619 6.27618 6.54554 7.45008 8.75974 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.003307 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.208204 B = 8465.714110 C = 9314.021165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.994 5.994 4 C 0.248 3.752 5 C -0.612 4.612 6 H 0.068 0.932 7 C -0.030 4.030 8 N -0.937 5.937 9 Si 1.111 2.889 10 H -0.291 1.291 11 H -0.268 1.268 12 H -0.263 1.263 13 S 2.791 3.209 14 O -0.997 6.997 15 O -1.019 7.019 16 N -1.001 6.001 17 C 0.089 3.911 18 C 0.123 3.877 19 C -0.130 4.130 20 C 0.091 3.909 21 H 0.035 0.965 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.114 4.114 25 C 0.052 3.948 26 N -0.546 5.546 27 C 0.020 3.980 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.013 0.987 34 H 0.009 0.991 35 H 0.255 0.745 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.028 0.972 51 H 0.062 0.938 52 H 0.080 0.920 53 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 -11.865 -19.949 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.002 4.002 3 N -0.834 5.834 4 C 0.123 3.877 5 C -0.651 4.651 6 H 0.086 0.914 7 C -0.228 4.228 8 N -0.574 5.574 9 Si 0.932 3.068 10 H -0.217 1.217 11 H -0.193 1.193 12 H -0.188 1.188 13 S 2.800 3.200 14 O -0.981 6.981 15 O -1.003 7.003 16 N -0.842 5.842 17 C -0.056 4.056 18 C -0.002 4.002 19 C -0.170 4.170 20 C -0.018 4.018 21 H 0.053 0.947 22 C -0.151 4.151 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.075 4.075 26 N -0.271 5.271 27 C -0.128 4.128 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.046 0.954 51 H 0.081 0.919 52 H 0.099 0.901 53 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.695 -10.733 -19.195 23.299 hybrid contribution -2.166 -0.385 -0.670 2.300 sum 5.528 -11.118 -19.864 23.426 Atomic orbital electron populations 1.22201 0.95805 1.03408 1.01288 1.21235 0.94684 0.81199 1.03113 1.57604 1.79420 1.24024 1.22366 1.18831 0.97038 0.90544 0.81253 1.22595 1.02951 1.34267 1.05309 0.91370 1.27245 1.07462 0.93190 0.94918 1.70921 1.06190 1.40002 1.40299 0.83035 0.70852 0.77204 0.75713 1.21684 1.19287 1.18783 1.01440 0.73555 0.72527 0.72444 1.93518 1.67423 1.78843 1.58340 1.93503 1.87318 1.33456 1.86046 1.57594 1.23472 1.42980 1.60157 1.21605 0.89677 0.94916 0.99409 1.21482 1.03568 0.86707 0.88483 1.22090 1.02488 0.98475 0.93918 1.21568 0.97985 0.94559 0.87678 0.94686 1.21715 0.96446 0.97162 0.99768 1.21601 1.02362 0.97163 0.94820 1.21585 0.97078 0.99569 0.96921 1.22190 0.97663 0.91403 0.96260 1.61965 1.41158 1.21456 1.02505 1.22429 0.90746 0.97517 1.02147 0.88799 0.93652 0.93254 0.89651 0.90379 0.96904 0.97348 0.93536 0.92394 0.87851 0.92512 0.87648 0.90576 0.93152 0.90137 0.91026 0.90353 0.90522 0.92321 0.91404 0.90162 0.89997 0.95368 0.91921 0.90107 0.96202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.24 10.24 71.98 0.74 -4.50 16 2 C 0.12 4.20 6.05 86.38 0.52 4.72 16 3 N -0.99 -41.64 2.83 -519.87 -1.47 -43.10 16 4 C 0.25 12.59 4.89 85.63 0.42 13.01 16 5 C -0.61 -31.93 9.35 25.60 0.24 -31.70 16 6 H 0.07 3.35 7.13 -2.91 -0.02 3.33 16 7 C -0.03 -1.61 5.45 84.65 0.46 -1.15 16 8 N -0.94 -55.98 13.65 21.45 0.29 -55.69 16 9 Si 1.11 47.13 29.91 68.60 2.05 49.18 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 12 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 13 S 2.79 113.24 6.00 -56.49 -0.34 112.91 16 14 O -1.00 -39.94 15.96 -128.00 -2.04 -41.99 16 15 O -1.02 -49.67 15.29 -128.00 -1.96 -51.63 16 16 N -1.00 -32.31 3.24 -539.13 -1.75 -34.06 16 17 C 0.09 2.76 10.70 127.77 1.37 4.13 16 18 C 0.12 3.04 5.01 86.38 0.43 3.48 16 19 C -0.13 -3.05 4.75 30.60 0.15 -2.90 16 20 C 0.09 1.83 1.89 44.94 0.08 1.91 16 21 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 22 C -0.11 -1.80 5.11 30.65 0.16 -1.64 16 23 C -0.12 -1.63 6.00 30.67 0.18 -1.44 16 24 C -0.11 -1.48 6.09 30.65 0.19 -1.29 16 25 C 0.05 0.82 5.46 86.33 0.47 1.29 16 26 N -0.55 -10.75 4.75 -897.16 -4.26 -15.00 16 27 C 0.02 0.40 8.88 127.69 1.13 1.53 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.60 8.01 -2.38 -0.02 1.58 16 31 H 0.09 2.46 7.53 -2.39 -0.02 2.44 16 32 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 33 H 0.01 0.69 7.61 -2.39 -0.02 0.67 16 34 H 0.01 0.49 6.85 -2.39 -0.02 0.47 16 35 H 0.26 15.53 7.11 -92.71 -0.66 14.87 16 36 H 0.06 1.90 7.43 -2.39 -0.02 1.89 16 37 H 0.10 2.35 8.07 -2.39 -0.02 2.33 16 38 H 0.06 2.01 7.06 -2.39 -0.02 1.99 16 39 H 0.11 2.06 6.78 -2.39 -0.02 2.05 16 40 H 0.08 1.89 7.23 -2.39 -0.02 1.87 16 41 H 0.05 1.39 6.17 -2.39 -0.01 1.37 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.12 6.71 -2.39 -0.02 1.11 16 45 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.08 1.13 8.00 -2.39 -0.02 1.11 16 50 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.06 1.38 6.52 -2.39 -0.02 1.37 16 52 H 0.08 1.33 7.97 -2.39 -0.02 1.31 16 53 H 0.02 0.42 8.11 -2.39 -0.02 0.40 16 Total: -1.00 -69.13 416.66 -1.96 -71.09 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.96 Total: 22.85 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 6.54 Total: -14.55 kcal Atomic # 7 Polarization: -140.68 SS G_CDS: -7.18 Total: -147.86 kcal Atomic # 8 Polarization: -89.61 SS G_CDS: -4.00 Total: -93.61 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.05 Total: 49.18 kcal Atomic # 16 Polarization: 113.24 SS G_CDS: -0.34 Total: 112.91 kcal Total: -69.13 -1.96 -71.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337094600.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.566 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds