Wall clock time and date at job start Wed Apr 1 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47114 * 2 1 4 4 C 1.46499 * 120.00414 * 275.00229 * 3 2 1 5 5 C 1.50702 * 109.47156 * 275.00039 * 4 3 2 6 6 H 1.08006 * 119.99405 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00352 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99564 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00037 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47262 * 60.00118 * 9 7 5 11 11 H 1.48502 * 109.47093 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47173 * 300.00069 * 9 7 5 13 13 S 1.65602 * 119.99849 * 95.00208 * 3 2 1 14 14 O 1.42106 * 106.39920 * 336.45715 * 13 3 2 15 15 O 1.42100 * 106.40108 * 203.54027 * 13 3 2 16 16 N 1.65596 * 107.21942 * 90.00051 * 13 3 2 17 17 C 1.46497 * 120.00303 * 64.99884 * 16 13 3 18 18 H 1.09008 * 109.47097 * 334.66522 * 17 16 13 19 19 C 1.52997 * 109.47040 * 94.66280 * 17 16 13 20 20 C 1.52996 * 109.47352 * 214.66519 * 17 16 13 21 21 N 1.46903 * 109.46943 * 64.28660 * 20 17 16 22 22 C 1.46847 * 110.99647 * 285.83058 * 21 20 17 23 23 C 1.53039 * 109.51943 * 174.16346 * 22 21 20 24 24 C 1.53117 * 109.28144 * 59.18150 * 23 22 21 25 25 C 1.53119 * 109.16018 * 302.34608 * 24 23 22 26 26 H 1.09002 * 109.53446 * 297.69362 * 25 24 23 27 27 C 1.53000 * 109.50682 * 177.59514 * 25 24 23 28 28 C 1.46843 * 110.99752 * 161.62491 * 21 20 17 29 29 H 1.08995 * 109.47059 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46835 * 299.99714 * 1 2 3 31 31 H 1.08997 * 109.46863 * 59.99624 * 1 2 3 32 32 H 1.09001 * 109.46835 * 240.00286 * 2 1 3 33 33 H 1.08995 * 109.47371 * 120.00295 * 2 1 3 34 34 H 1.09001 * 109.46533 * 34.99499 * 4 3 2 35 35 H 1.08999 * 109.47527 * 154.99598 * 4 3 2 36 36 H 0.97001 * 119.99410 * 179.97438 * 8 7 5 37 37 H 0.97003 * 120.00018 * 245.00263 * 16 13 3 38 38 H 1.08998 * 109.46979 * 60.00124 * 19 17 16 39 39 H 1.09003 * 109.47278 * 179.97438 * 19 17 16 40 40 H 1.09005 * 109.47210 * 300.00373 * 19 17 16 41 41 H 1.08994 * 109.47122 * 304.28402 * 20 17 16 42 42 H 1.09003 * 109.47039 * 184.28597 * 20 17 16 43 43 H 1.09002 * 109.46269 * 294.17696 * 22 21 20 44 44 H 1.08993 * 109.46317 * 54.14831 * 22 21 20 45 45 H 1.09003 * 109.50536 * 299.23883 * 23 22 21 46 46 H 1.09003 * 109.53544 * 179.13728 * 23 22 21 47 47 H 1.08995 * 109.52604 * 182.44334 * 24 23 22 48 48 H 1.08997 * 109.57817 * 62.27981 * 24 23 22 49 49 H 1.09000 * 109.46940 * 300.19620 * 27 25 24 50 50 H 1.08998 * 109.46991 * 60.19657 * 27 25 24 51 51 H 1.09000 * 109.47131 * 180.19337 * 27 25 24 52 52 H 1.09006 * 109.46654 * 305.85028 * 28 21 20 53 53 H 1.08998 * 109.46926 * 65.82976 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1088 -1.2638 5 6 3.4948 1.7890 -1.8823 6 1 4.1724 1.1118 -1.3835 7 6 3.8526 2.3608 -3.0848 8 7 3.0276 3.1858 -3.6919 9 14 5.5089 1.9637 -3.8517 10 1 5.5985 0.5038 -4.1080 11 1 5.6508 2.7013 -5.1328 12 1 6.5945 2.3709 -2.9237 13 16 2.4123 2.1202 1.4287 14 8 1.6869 1.4414 2.4448 15 8 2.3058 3.5186 1.1999 16 7 4.0145 1.8137 1.7137 17 6 5.0352 2.3524 0.8114 18 1 4.5985 2.5182 -0.1735 19 6 5.5585 3.6784 1.3671 20 6 6.1907 1.3563 0.6958 21 7 5.7094 0.1188 0.0673 22 6 4.8935 -0.6642 1.0041 23 6 4.2915 -1.8678 0.2753 24 6 5.4209 -2.7318 -0.2925 25 6 6.2841 -1.8799 -1.2271 26 1 5.6800 -1.5318 -2.0650 27 6 7.4504 -2.7195 -1.7523 28 6 6.8284 -0.6759 -0.4548 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.3618 1.8098 -1.9452 35 1 2.0922 3.1804 -1.0755 36 1 3.2795 3.5883 -4.5377 37 1 4.2772 1.2774 2.4781 38 1 5.9951 3.5125 2.3519 39 1 6.3183 4.0790 0.6960 40 1 4.7352 4.3880 1.4495 41 1 6.5781 1.1323 1.6896 42 1 6.9837 1.7890 0.0858 43 1 5.5184 -1.0129 1.8263 44 1 4.0916 -0.0394 1.3972 45 1 3.6554 -1.5196 -0.5386 46 1 3.6982 -2.4577 0.9741 47 1 4.9960 -3.5668 -0.8494 48 1 6.0347 -3.1130 0.5236 49 1 8.0533 -3.0684 -0.9139 50 1 7.0622 -3.5767 -2.3023 51 1 8.0664 -2.1115 -2.4148 52 1 7.4318 -0.0596 -1.1212 53 1 7.4442 -1.0246 0.3742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337182720.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:51 Heat of formation + Delta-G solvation = -97.425492 kcal Electronic energy + Delta-G solvation = -33393.680390 eV Core-core repulsion = 29426.052875 eV Total energy + Delta-G solvation = -3967.627515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.33263 -38.31602 -37.66509 -37.40915 -36.81059 -34.51583 -34.25016 -32.86121 -31.42951 -30.98237 -28.32933 -27.55967 -27.01636 -24.80928 -23.81154 -23.24550 -22.76959 -21.93088 -20.58154 -20.10400 -18.67443 -18.49819 -18.04002 -17.16102 -16.88236 -16.58142 -16.11470 -16.03819 -15.48906 -15.23485 -14.94828 -14.84684 -14.73315 -14.48936 -14.34686 -13.90786 -13.75787 -13.65001 -13.50909 -13.37398 -13.24926 -13.22088 -13.07906 -12.94353 -12.78468 -12.65262 -12.63658 -12.58211 -12.48896 -12.17075 -12.11205 -12.01898 -11.83576 -11.70683 -11.63448 -11.48989 -11.27873 -11.10508 -11.01763 -10.38795 -10.01884 -9.63817 -8.90272 -7.99009 -6.04841 -0.19066 1.50987 1.52202 1.59369 2.09816 2.56728 2.70139 3.06162 3.33163 3.54147 3.89079 3.97696 4.04877 4.07210 4.12449 4.33455 4.38067 4.48341 4.50038 4.52207 4.57451 4.63560 4.68931 4.73614 4.77697 4.80140 4.80760 4.82855 4.92940 4.96558 5.00353 5.02691 5.05397 5.14910 5.22990 5.24703 5.34649 5.37467 5.41206 5.43406 5.48809 5.50362 5.56043 5.68101 5.73374 5.98410 6.05131 6.30949 6.34813 6.39408 6.42547 7.21478 7.63376 9.09940 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008917 B = 0.006624 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.406071 B = 4225.967673 C = 5044.147440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.987 5.987 4 C 0.259 3.741 5 C -0.527 4.527 6 H 0.126 0.874 7 C 0.012 3.988 8 N -0.938 5.938 9 Si 0.944 3.056 10 H -0.268 1.268 11 H -0.307 1.307 12 H -0.260 1.260 13 S 2.795 3.205 14 O -1.011 7.011 15 O -1.020 7.020 16 N -1.103 6.103 17 C 0.128 3.872 18 H 0.108 0.892 19 C -0.164 4.164 20 C 0.065 3.935 21 N -0.541 5.541 22 C 0.043 3.957 23 C -0.126 4.126 24 C -0.104 4.104 25 C -0.094 4.094 26 H 0.052 0.948 27 C -0.139 4.139 28 C 0.065 3.935 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.014 0.986 35 H 0.011 0.989 36 H 0.256 0.744 37 H 0.418 0.582 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.060 0.940 51 H 0.049 0.951 52 H 0.060 0.940 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 -12.084 9.512 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.828 5.828 4 C 0.135 3.865 5 C -0.566 4.566 6 H 0.144 0.856 7 C -0.186 4.186 8 N -0.580 5.580 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.235 1.235 12 H -0.185 1.185 13 S 2.803 3.197 14 O -0.995 6.995 15 O -1.003 7.003 16 N -0.866 5.866 17 C 0.021 3.979 18 H 0.126 0.874 19 C -0.224 4.224 20 C -0.065 4.065 21 N -0.266 5.266 22 C -0.085 4.085 23 C -0.163 4.163 24 C -0.141 4.141 25 C -0.113 4.113 26 H 0.070 0.930 27 C -0.197 4.197 28 C -0.062 4.062 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.032 0.968 35 H 0.029 0.971 36 H 0.065 0.935 37 H 0.255 0.745 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.068 0.932 52 H 0.079 0.921 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.655 -11.223 9.377 16.507 hybrid contribution 1.218 -0.091 -0.329 1.265 sum 8.873 -11.314 9.049 16.989 Atomic orbital electron populations 1.22230 0.96474 1.03065 1.01175 1.21237 0.93986 0.81456 1.02967 1.57463 1.79122 1.23738 1.22440 1.18762 0.97170 0.90356 0.80167 1.22521 1.02394 1.26730 1.04921 0.85621 1.25673 0.99721 0.95205 0.97951 1.70115 1.38046 1.32275 1.17549 0.85803 0.81781 0.78274 0.76992 1.19355 1.23450 1.18461 1.01275 0.73343 0.72797 0.72310 1.93523 1.71501 1.76174 1.58281 1.93527 1.86787 1.33828 1.86170 1.55931 1.24429 1.67844 1.38442 1.21370 0.89384 0.92605 0.94525 0.87412 1.22221 1.01377 0.96647 1.02150 1.22234 0.95591 0.90140 0.98495 1.61647 1.21840 1.05503 1.37561 1.22545 0.97628 0.95030 0.93257 1.21729 0.98260 0.95833 1.00525 1.21539 0.96638 0.97395 0.98564 1.21173 0.97185 0.94978 0.97996 0.92991 1.21739 0.97408 0.99476 1.01080 1.22108 0.91836 0.94389 0.97916 0.89223 0.93639 0.93500 0.90106 0.89935 0.96773 0.97099 0.93512 0.74540 0.90601 0.90959 0.93716 0.92553 0.89954 0.94367 0.90284 0.92007 0.90401 0.91651 0.91437 0.91650 0.92127 0.93196 0.92134 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.22 10.24 71.98 0.74 -4.48 16 2 C 0.13 4.22 5.39 86.38 0.47 4.69 16 3 N -0.99 -39.14 2.83 -519.84 -1.47 -40.60 16 4 C 0.26 12.71 5.31 85.63 0.45 13.17 16 5 C -0.53 -25.77 6.91 25.60 0.18 -25.60 16 6 H 0.13 5.54 5.20 -2.91 -0.02 5.53 16 7 C 0.01 0.65 5.46 84.65 0.46 1.11 16 8 N -0.94 -54.37 13.29 21.45 0.28 -54.09 16 9 Si 0.94 41.98 29.54 68.60 2.03 44.01 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.31 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 13 S 2.79 108.57 5.79 -56.49 -0.33 108.24 16 14 O -1.01 -39.58 17.11 -128.00 -2.19 -41.77 16 15 O -1.02 -48.29 15.92 -128.00 -2.04 -50.32 16 16 N -1.10 -33.61 3.26 -169.40 -0.55 -34.16 16 17 C 0.13 4.07 2.79 44.99 0.13 4.19 16 18 H 0.11 4.38 4.24 -2.38 -0.01 4.37 16 19 C -0.16 -4.80 9.52 71.98 0.69 -4.12 16 20 C 0.06 1.68 4.75 86.30 0.41 2.09 16 21 N -0.54 -14.75 2.92 -896.36 -2.61 -17.36 16 22 C 0.04 1.05 4.94 86.33 0.43 1.47 16 23 C -0.13 -2.89 5.64 30.65 0.17 -2.71 16 24 C -0.10 -2.12 5.29 30.67 0.16 -1.96 16 25 C -0.09 -2.23 2.88 -10.74 -0.03 -2.26 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 C -0.14 -2.64 9.20 71.98 0.66 -1.98 16 28 C 0.07 1.57 4.72 86.33 0.41 1.98 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.66 7.07 -2.39 -0.02 2.65 16 33 H 0.08 2.34 6.92 -2.39 -0.02 2.32 16 34 H 0.01 0.75 8.11 -2.39 -0.02 0.73 16 35 H 0.01 0.62 6.91 -2.39 -0.02 0.60 16 36 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.42 10.05 7.56 -96.74 -0.73 9.32 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.04 1.54 7.60 -2.38 -0.02 1.52 16 41 H 0.06 1.17 8.02 -2.39 -0.02 1.16 16 42 H 0.08 2.11 7.82 -2.39 -0.02 2.09 16 43 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 2.04 3.83 -2.39 -0.01 2.03 16 45 H 0.06 1.71 6.47 -2.39 -0.02 1.70 16 46 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 52 H 0.06 1.56 7.94 -2.38 -0.02 1.54 16 53 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -65.43 404.96 -1.41 -66.84 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.15 Total: 33.62 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 5.32 Total: -14.40 kcal Atomic # 7 Polarization: -141.87 SS G_CDS: -4.35 Total: -146.22 kcal Atomic # 8 Polarization: -87.87 SS G_CDS: -4.23 Total: -92.09 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 108.57 SS G_CDS: -0.33 Total: 108.24 kcal Total: -65.43 -1.41 -66.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337182720.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.586 kcal (2) G-P(sol) polarization free energy of solvation -65.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds