Wall clock time and date at job start Wed Apr 1 2020 05:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47150 * 2 1 4 4 C 1.46495 * 119.99875 * 275.00061 * 3 2 1 5 5 C 1.50704 * 109.47071 * 280.16679 * 4 3 2 6 6 H 1.08002 * 119.99972 * 5.56407 * 5 4 3 7 7 C 1.37877 * 119.99821 * 185.55816 * 5 4 3 8 8 N 1.31514 * 120.00497 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99747 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47106 * 60.00693 * 9 7 5 11 11 H 1.48502 * 109.46856 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47492 * 300.00350 * 9 7 5 13 13 S 1.65601 * 120.00025 * 94.99985 * 3 2 1 14 14 O 1.42108 * 106.40165 * 338.10403 * 13 3 2 15 15 O 1.42091 * 106.40197 * 205.18322 * 13 3 2 16 16 N 1.65602 * 107.21692 * 91.63963 * 13 3 2 17 17 C 1.46506 * 119.99502 * 66.46351 * 16 13 3 18 18 C 1.53002 * 109.46848 * 165.18279 * 17 16 13 19 19 C 1.53000 * 109.47234 * 300.00099 * 18 17 16 20 20 C 1.52999 * 109.46875 * 59.99857 * 18 17 16 21 21 C 1.52996 * 109.46961 * 179.97438 * 18 17 16 22 22 N 1.46900 * 109.46993 * 166.77991 * 21 18 17 23 23 C 1.48540 * 111.00177 * 57.65612 * 22 21 18 24 24 C 1.54939 * 103.22646 * 159.72060 * 23 22 21 25 25 C 1.54590 * 102.92074 * 322.58250 * 24 23 22 26 26 C 1.47909 * 111.00083 * 175.04959 * 22 21 18 27 27 H 1.09006 * 109.46975 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47375 * 299.99848 * 1 2 3 29 29 H 1.08999 * 109.47049 * 60.00028 * 1 2 3 30 30 H 1.09010 * 109.47075 * 239.99964 * 2 1 3 31 31 H 1.09002 * 109.47286 * 120.00436 * 2 1 3 32 32 H 1.08999 * 109.47541 * 40.16888 * 4 3 2 33 33 H 1.09007 * 109.47165 * 160.17184 * 4 3 2 34 34 H 0.96993 * 120.00199 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00157 * 246.45785 * 16 13 3 36 36 H 1.08996 * 109.47171 * 45.18633 * 17 16 13 37 37 H 1.08999 * 109.47153 * 285.18303 * 17 16 13 38 38 H 1.08994 * 109.47446 * 59.99940 * 19 18 17 39 39 H 1.09001 * 109.47191 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.46588 * 299.99862 * 19 18 17 41 41 H 1.08996 * 109.47021 * 82.65789 * 20 18 17 42 42 H 1.09003 * 109.46999 * 202.65260 * 20 18 17 43 43 H 1.08995 * 109.47348 * 322.65136 * 20 18 17 44 44 H 1.08996 * 109.47449 * 286.77956 * 21 18 17 45 45 H 1.08998 * 109.47529 * 46.78134 * 21 18 17 46 46 H 1.09003 * 110.66234 * 278.15769 * 23 22 21 47 47 H 1.08998 * 110.66610 * 41.28384 * 23 22 21 48 48 H 1.09000 * 110.72078 * 204.22656 * 24 23 22 49 49 H 1.08994 * 110.72267 * 80.94999 * 24 23 22 50 50 H 1.08999 * 110.31213 * 263.04008 * 25 24 23 51 51 H 1.09002 * 110.38968 * 140.91901 * 25 24 23 52 52 H 1.08991 * 109.91393 * 333.51271 * 26 22 21 53 53 H 1.09000 * 109.91253 * 94.60587 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4370 1.6925 -1.9441 6 1 4.0358 0.8960 -1.5276 7 6 3.8425 2.3286 -3.0982 8 7 3.1137 3.2988 -3.6052 9 14 5.4273 1.8123 -3.9417 10 1 5.3367 0.3827 -4.3330 11 1 5.6372 2.6452 -5.1531 12 1 6.5679 1.9991 -3.0094 13 16 2.4122 2.1202 1.4287 14 8 1.7169 1.4169 2.4492 15 8 2.2683 3.5169 1.2110 16 7 4.0250 1.8515 1.6912 17 6 5.0217 2.4478 0.7983 18 6 6.4039 2.3652 1.4493 19 6 6.3886 3.1256 2.7769 20 6 6.7603 0.8995 1.7051 21 6 7.4449 2.9874 0.5165 22 7 8.6985 3.1978 1.2528 23 6 9.2030 1.9213 1.8207 24 6 10.7041 2.2130 2.0703 25 6 11.0918 3.0906 0.8581 26 6 9.7654 3.6885 0.3536 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.3114 1.8794 -1.9107 33 1 2.1843 3.1802 -1.0654 34 1 3.3992 3.7466 -4.4169 35 1 4.3098 1.2994 2.4362 36 1 4.7678 3.4920 0.6161 37 1 5.0326 1.9061 -0.1475 38 1 5.6471 2.6820 3.4412 39 1 7.3732 3.0664 3.2409 40 1 6.1347 4.1698 2.5945 41 1 7.1608 0.4583 0.7925 42 1 7.5082 0.8401 2.4959 43 1 5.8659 0.3559 2.0095 44 1 7.6255 2.3180 -0.3245 45 1 7.0759 3.9440 0.1467 46 1 8.6952 1.6895 2.7570 47 1 9.0830 1.1079 1.1051 48 1 11.2808 1.2881 2.0770 49 1 10.8407 2.7608 3.0026 50 1 11.5516 2.4804 0.0808 51 1 11.7718 3.8849 1.1663 52 1 9.5728 3.3569 -0.6666 53 1 9.8084 4.7771 0.3881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337196000.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:49 Heat of formation + Delta-G solvation = -93.914789 kcal Electronic energy + Delta-G solvation = -31629.709250 eV Core-core repulsion = 27662.233970 eV Total energy + Delta-G solvation = -3967.475280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.73653 -38.37278 -38.04896 -37.63856 -36.86513 -34.68772 -34.37429 -31.77276 -31.49363 -29.87940 -28.50730 -28.07622 -27.52142 -25.62973 -24.93347 -23.25673 -21.91908 -21.65325 -20.38975 -20.06154 -18.67429 -18.55794 -18.24600 -17.32828 -17.13830 -16.83253 -16.40341 -16.11818 -15.78683 -15.25532 -15.00999 -14.85281 -14.68176 -14.67205 -14.58481 -14.24235 -13.77505 -13.62685 -13.60355 -13.33754 -13.32131 -13.15223 -13.03743 -12.99456 -12.83814 -12.74140 -12.68628 -12.58948 -12.42418 -12.25885 -12.18072 -12.12466 -11.95267 -11.76839 -11.62528 -11.55200 -11.45374 -11.37791 -11.11610 -10.55390 -10.28906 -9.76173 -9.34690 -8.14468 -6.26649 -0.24776 1.41969 1.42863 1.50085 2.04100 2.42219 2.64431 3.02625 3.17615 3.47814 3.70545 3.77365 3.83457 3.93485 4.02175 4.07140 4.16435 4.38853 4.42135 4.44966 4.46034 4.52022 4.64162 4.65663 4.70911 4.75139 4.77935 4.85188 4.90298 4.94005 4.99266 5.01374 5.01487 5.06763 5.12388 5.16742 5.20639 5.24766 5.29873 5.32845 5.35361 5.42431 5.51200 5.54675 5.56023 5.79385 5.92951 6.00483 6.07769 6.14089 6.27937 6.84444 7.42140 8.93575 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010339 B = 0.004441 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.505611 B = 6303.237699 C = 8126.320762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.260 3.740 5 C -0.530 4.530 6 H 0.076 0.924 7 C 0.017 3.983 8 N -0.927 5.927 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.292 1.292 12 H -0.262 1.262 13 S 2.799 3.201 14 O -1.005 7.005 15 O -1.021 7.021 16 N -1.108 6.108 17 C 0.130 3.870 18 C -0.060 4.060 19 C -0.125 4.125 20 C -0.156 4.156 21 C 0.059 3.941 22 N -0.514 5.514 23 C 0.020 3.980 24 C -0.122 4.122 25 C -0.126 4.126 26 C 0.027 3.973 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.015 0.985 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.420 0.580 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.061 0.939 46 H 0.102 0.898 47 H 0.046 0.954 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.080 0.920 52 H 0.032 0.968 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.474 -6.822 11.045 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.136 3.864 5 C -0.570 4.570 6 H 0.094 0.906 7 C -0.183 4.183 8 N -0.567 5.567 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.218 1.218 12 H -0.187 1.187 13 S 2.807 3.193 14 O -0.989 6.989 15 O -1.004 7.004 16 N -0.872 5.872 17 C 0.003 3.997 18 C -0.062 4.062 19 C -0.182 4.182 20 C -0.212 4.212 21 C -0.070 4.070 22 N -0.238 5.238 23 C -0.107 4.107 24 C -0.160 4.160 25 C -0.164 4.164 26 C -0.101 4.101 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.258 0.742 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.119 0.881 47 H 0.064 0.936 48 H 0.102 0.898 49 H 0.096 0.904 50 H 0.088 0.912 51 H 0.099 0.901 52 H 0.050 0.950 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.674 -5.701 11.704 18.169 hybrid contribution 0.672 -0.564 -1.868 2.064 sum 13.346 -6.265 9.836 17.723 Atomic orbital electron populations 1.22194 0.96096 1.03196 1.01229 1.21238 0.94504 0.81301 1.03302 1.57628 1.79332 1.24024 1.22687 1.18729 0.96446 0.90967 0.80258 1.21708 1.07418 1.18911 1.08927 0.90628 1.25708 0.99961 0.94762 0.97863 1.70060 1.40108 1.24465 1.22051 0.85766 0.80529 0.78353 0.78057 1.19324 1.21826 1.18661 1.01108 0.73253 0.72676 0.72237 1.93527 1.72561 1.75140 1.57721 1.93524 1.86449 1.34118 1.86329 1.55557 1.24230 1.66285 1.41087 1.21352 0.87914 0.97494 0.92942 1.20645 0.91844 0.97349 0.96331 1.21729 1.02548 0.98902 0.95052 1.22453 1.02689 0.93453 1.02642 1.22209 0.90771 0.99708 0.94289 1.64808 1.02031 1.26204 1.30748 1.23862 0.95573 0.90783 1.00447 1.22540 0.94849 1.00141 0.98454 1.22371 0.96008 0.99802 0.98245 1.22942 0.91704 1.00898 0.94580 0.89065 0.93576 0.93440 0.90027 0.89571 0.96741 0.96217 0.92718 0.74236 0.93282 0.90686 0.92663 0.90113 0.94235 0.93008 0.88980 0.91949 0.95319 0.92077 0.88051 0.93604 0.89767 0.90447 0.91216 0.90132 0.94986 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.15 10.24 71.98 0.74 -4.41 16 2 C 0.12 4.04 6.03 86.38 0.52 4.57 16 3 N -1.00 -40.36 2.84 -519.83 -1.48 -41.84 16 4 C 0.26 12.87 5.47 85.64 0.47 13.34 16 5 C -0.53 -26.40 7.71 25.60 0.20 -26.20 16 6 H 0.08 3.52 6.93 -2.91 -0.02 3.50 16 7 C 0.02 0.88 5.46 84.65 0.46 1.34 16 8 N -0.93 -52.91 13.29 21.45 0.28 -52.63 16 9 Si 0.95 40.71 29.54 68.60 2.03 42.74 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 13 S 2.80 110.49 6.12 -56.49 -0.35 110.15 16 14 O -1.01 -39.68 17.05 -128.00 -2.18 -41.86 16 15 O -1.02 -49.13 16.12 -128.00 -2.06 -51.19 16 16 N -1.11 -35.15 5.24 -187.48 -0.98 -36.14 16 17 C 0.13 4.40 5.00 86.38 0.43 4.83 16 18 C -0.06 -1.56 0.53 -52.18 -0.03 -1.59 16 19 C -0.12 -3.02 7.82 71.98 0.56 -2.46 16 20 C -0.16 -3.26 7.14 71.98 0.51 -2.75 16 21 C 0.06 1.64 4.14 86.30 0.36 2.00 16 22 N -0.51 -11.69 4.34 -883.01 -3.83 -15.52 16 23 C 0.02 0.36 4.19 86.65 0.36 0.72 16 24 C -0.12 -1.74 7.06 31.80 0.22 -1.52 16 25 C -0.13 -1.97 6.93 31.47 0.22 -1.75 16 26 C 0.03 0.57 6.70 86.44 0.58 1.14 16 27 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 30 H 0.08 2.68 8.09 -2.38 -0.02 2.66 16 31 H 0.09 2.45 7.56 -2.39 -0.02 2.44 16 32 H 0.01 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.02 1.12 6.87 -2.38 -0.02 1.10 16 34 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.42 10.59 6.51 -96.75 -0.63 9.96 16 36 H 0.05 1.94 7.72 -2.39 -0.02 1.92 16 37 H 0.08 2.83 5.46 -2.39 -0.01 2.82 16 38 H 0.05 1.24 7.19 -2.39 -0.02 1.22 16 39 H 0.08 1.70 5.88 -2.39 -0.01 1.68 16 40 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.14 7.09 -2.39 -0.02 1.12 16 42 H 0.09 1.51 4.72 -2.39 -0.01 1.50 16 43 H 0.06 1.25 6.26 -2.39 -0.01 1.24 16 44 H 0.03 0.85 7.63 -2.39 -0.02 0.83 16 45 H 0.06 1.90 8.08 -2.39 -0.02 1.89 16 46 H 0.10 1.62 4.61 -2.39 -0.01 1.61 16 47 H 0.05 0.86 6.72 -2.39 -0.02 0.85 16 48 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 50 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.03 0.74 7.65 -2.39 -0.02 0.73 16 53 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.43 404.92 -2.70 -68.12 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.26 Total: 30.89 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 5.61 Total: -12.73 kcal Atomic # 7 Polarization: -140.11 SS G_CDS: -6.00 Total: -146.11 kcal Atomic # 8 Polarization: -88.81 SS G_CDS: -4.25 Total: -93.05 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 110.49 SS G_CDS: -0.35 Total: 110.15 kcal Total: -65.43 -2.70 -68.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337196000.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.794 kcal (2) G-P(sol) polarization free energy of solvation -65.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds