Wall clock time and date at job start Wed Apr 1 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.46852 * 2 1 4 4 C 1.46499 * 120.00247 * 275.00106 * 3 2 1 5 5 C 1.50699 * 109.46974 * 294.61529 * 4 3 2 6 6 H 1.08003 * 119.99921 * 4.73325 * 5 4 3 7 7 C 1.37874 * 120.00380 * 184.73981 * 5 4 3 8 8 N 1.31519 * 119.99467 * 5.25951 * 7 5 4 9 9 Si 1.86794 * 120.00569 * 185.26311 * 7 5 4 10 10 H 1.48508 * 109.47035 * 5.01275 * 9 7 5 11 11 H 1.48507 * 109.47345 * 125.00733 * 9 7 5 12 12 H 1.48492 * 109.47432 * 245.01037 * 9 7 5 13 13 S 1.65599 * 119.99851 * 94.99720 * 3 2 1 14 14 O 1.42100 * 106.40510 * 331.18626 * 13 3 2 15 15 O 1.42097 * 106.40203 * 198.25790 * 13 3 2 16 16 N 1.65602 * 107.21503 * 84.72013 * 13 3 2 17 17 C 1.46503 * 119.99952 * 96.50301 * 16 13 3 18 18 C 1.52995 * 109.47235 * 265.00051 * 17 16 13 19 19 C 1.46501 * 120.00278 * 276.50202 * 16 13 3 20 20 C 1.52993 * 109.47084 * 265.47765 * 19 16 13 21 21 C 1.53009 * 109.47086 * 184.77844 * 20 19 16 22 22 N 1.46902 * 109.46851 * 182.84112 * 21 20 19 23 23 C 1.48527 * 111.00234 * 51.39734 * 22 21 20 24 24 C 1.54932 * 103.22866 * 159.71896 * 23 22 21 25 25 C 1.54602 * 102.92207 * 322.58467 * 24 23 22 26 26 C 1.47903 * 110.99681 * 168.78978 * 22 21 20 27 27 H 1.09004 * 109.47267 * 299.99724 * 1 2 3 28 28 H 1.08998 * 109.47445 * 60.00093 * 1 2 3 29 29 H 1.09001 * 109.46717 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47205 * 240.00333 * 2 1 3 31 31 H 1.08998 * 109.47445 * 119.99907 * 2 1 3 32 32 H 1.08999 * 109.47277 * 54.60842 * 4 3 2 33 33 H 1.08993 * 109.47183 * 174.60980 * 4 3 2 34 34 H 0.97000 * 119.99738 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47101 * 25.00108 * 17 16 13 36 36 H 1.08995 * 109.47103 * 144.99917 * 17 16 13 37 37 H 1.09004 * 109.47050 * 59.99703 * 18 17 16 38 38 H 1.08993 * 109.47378 * 179.97438 * 18 17 16 39 39 H 1.09003 * 109.47123 * 300.00043 * 18 17 16 40 40 H 1.08997 * 109.46881 * 25.47944 * 19 16 13 41 41 H 1.08998 * 109.47096 * 145.47529 * 19 16 13 42 42 H 1.09002 * 109.47594 * 304.77776 * 20 19 16 43 43 H 1.08997 * 109.47531 * 64.77965 * 20 19 16 44 44 H 1.08991 * 109.46920 * 302.84034 * 21 20 19 45 45 H 1.08996 * 109.46836 * 62.84484 * 21 20 19 46 46 H 1.09006 * 110.66630 * 278.14876 * 23 22 21 47 47 H 1.09001 * 110.67001 * 41.28109 * 23 22 21 48 48 H 1.09001 * 110.72488 * 204.22327 * 24 23 22 49 49 H 1.08998 * 110.72387 * 80.94181 * 24 23 22 50 50 H 1.08998 * 110.30594 * 263.04378 * 25 24 23 51 51 H 1.08994 * 110.31109 * 140.87563 * 25 24 23 52 52 H 1.09003 * 109.91589 * 333.51130 * 26 22 21 53 53 H 1.09006 * 109.91654 * 94.60383 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.2242 1.4548 -2.1046 6 1 3.6916 0.5408 -1.7689 7 6 3.6030 2.0232 -3.3022 8 7 3.1103 3.1883 -3.6621 9 14 4.8159 1.1386 -4.4138 10 1 5.1250 -0.1979 -3.8448 11 1 4.2214 0.9757 -5.7649 12 1 6.0655 1.9343 -4.5155 13 16 2.4120 2.1203 1.4287 14 8 1.5947 1.5249 2.4271 15 8 2.4268 3.5169 1.1673 16 7 3.9719 1.6951 1.7868 17 6 5.0755 2.5902 1.4301 18 6 5.6572 2.1693 0.0791 19 6 4.2485 0.4238 2.4604 20 6 4.3404 0.6559 3.9698 21 6 4.7464 -0.6467 4.6624 22 7 4.7686 -0.4417 6.1168 23 6 3.4964 0.1625 6.5887 24 6 3.4802 -0.1803 8.0996 25 6 4.0875 -1.6015 8.1382 26 6 4.8925 -1.7304 6.8319 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.2098 2.0901 -1.8008 33 1 2.4395 3.1418 -1.0593 34 1 3.3765 3.5880 -4.5048 35 1 4.7063 3.6136 1.3637 36 1 5.8513 2.5326 2.1935 37 1 4.8813 2.2268 -0.6844 38 1 6.4779 2.8355 -0.1865 39 1 6.0265 1.1459 0.1455 40 1 3.4446 -0.2814 2.2495 41 1 5.1925 0.0179 2.0970 42 1 5.0863 1.4239 4.1746 43 1 3.3710 0.9812 4.3472 44 1 4.0274 -1.4281 4.4165 45 1 5.7380 -0.9452 4.3223 46 1 3.5046 1.2422 6.4393 47 1 2.6442 -0.2906 6.0823 48 1 2.4598 -0.1862 8.4828 49 1 4.0999 0.5193 8.6605 50 1 3.2960 -2.3503 8.1703 51 1 4.7456 -1.7084 9.0004 52 1 4.4828 -2.5349 6.2210 53 1 5.9401 -1.9314 7.0562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337199614.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:46 Heat of formation + Delta-G solvation = -102.137645 kcal Electronic energy + Delta-G solvation = -31092.059290 eV Core-core repulsion = 27124.227441 eV Total energy + Delta-G solvation = -3967.831849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.97572 -38.40869 -38.07705 -37.68168 -36.88491 -34.69411 -34.56472 -31.93558 -31.45837 -30.06224 -29.50661 -28.48986 -25.86100 -25.03565 -23.84247 -23.23932 -22.79934 -21.67818 -21.20861 -19.76133 -18.65839 -18.44536 -18.35670 -17.63376 -16.98008 -16.88674 -16.43310 -15.96948 -15.89167 -15.41104 -15.05792 -14.88668 -14.77110 -14.55981 -14.46136 -14.03125 -13.88484 -13.70829 -13.63420 -13.46458 -13.29937 -13.19600 -13.15219 -13.01954 -12.87498 -12.73508 -12.64660 -12.52893 -12.33881 -12.29250 -12.18770 -12.08971 -12.01045 -11.94878 -11.71589 -11.67563 -11.58546 -11.43096 -11.33741 -10.53862 -10.03632 -9.70278 -9.36788 -8.13274 -6.22896 -0.32137 1.43911 1.46675 1.56907 1.96411 2.44727 2.53489 3.04944 3.18906 3.38023 3.66708 3.77287 3.81055 4.00141 4.04446 4.13917 4.23860 4.34819 4.37286 4.39359 4.41522 4.47529 4.56245 4.58010 4.65432 4.67809 4.72869 4.73660 4.80709 4.83436 4.93644 4.97197 4.98619 5.02436 5.08213 5.14749 5.17703 5.23681 5.28545 5.29539 5.34598 5.38612 5.41190 5.51388 5.68377 5.76969 5.82219 5.95372 6.00691 6.11744 6.17725 6.87071 7.44124 8.95835 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015763 B = 0.003099 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.930477 B = 9033.663805 C = 9532.607730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.260 3.740 5 C -0.518 4.518 6 H 0.075 0.925 7 C 0.012 3.988 8 N -0.930 5.930 9 Si 0.955 3.045 10 H -0.257 1.257 11 H -0.287 1.287 12 H -0.282 1.282 13 S 2.787 3.213 14 O -1.000 7.000 15 O -1.019 7.019 16 N -0.998 5.998 17 C 0.120 3.880 18 C -0.188 4.188 19 C 0.126 3.874 20 C -0.136 4.136 21 C 0.054 3.946 22 N -0.530 5.530 23 C 0.027 3.973 24 C -0.123 4.123 25 C -0.128 4.128 26 C 0.031 3.969 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.004 0.996 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.039 0.961 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.082 0.918 52 H 0.047 0.953 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.717 -11.746 18.554 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.137 3.863 5 C -0.557 4.557 6 H 0.093 0.907 7 C -0.187 4.187 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.181 1.181 11 H -0.213 1.213 12 H -0.208 1.208 13 S 2.797 3.203 14 O -0.983 6.983 15 O -1.004 7.004 16 N -0.837 5.837 17 C -0.005 4.005 18 C -0.247 4.247 19 C 0.001 3.999 20 C -0.175 4.175 21 C -0.075 4.075 22 N -0.254 5.254 23 C -0.101 4.101 24 C -0.161 4.161 25 C -0.166 4.166 26 C -0.096 4.096 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.022 0.978 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.057 0.943 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.101 0.899 52 H 0.065 0.935 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.604 -10.723 19.035 22.327 hybrid contribution -0.199 -0.454 -1.608 1.683 sum 4.404 -11.177 17.427 21.167 Atomic orbital electron populations 1.22180 0.96150 1.03122 1.01195 1.21247 0.94517 0.81412 1.03109 1.57691 1.79250 1.24057 1.22624 1.18717 0.95960 0.91441 0.80226 1.21603 1.20427 1.09678 1.03990 0.90697 1.25757 0.98315 0.95173 0.99445 1.70103 1.46015 1.17513 1.23371 0.85551 0.78606 0.79324 0.78453 1.18060 1.21333 1.20810 1.01545 0.73605 0.72425 0.72732 1.93517 1.67302 1.79030 1.58480 1.93506 1.87343 1.33490 1.86033 1.57781 1.23774 1.29973 1.72219 1.21324 0.89261 0.92240 0.97647 1.22424 1.02276 1.01960 0.97994 1.21349 1.03738 0.83428 0.91414 1.22061 1.02026 0.98748 0.94677 1.22210 1.01906 0.95960 0.87380 1.64819 1.33537 1.21939 1.05143 1.23270 0.90756 1.00034 0.96005 1.22501 1.01617 0.97162 0.94853 1.22406 0.99630 0.96967 0.97626 1.22957 1.01459 0.90242 0.94977 0.93529 0.93583 0.89108 0.89817 0.89966 0.97845 0.95876 0.92744 0.91633 0.87592 0.91821 0.91516 0.91494 0.90673 0.87975 0.90635 0.92751 0.94232 0.89080 0.90991 0.94317 0.90252 0.90722 0.90864 0.89923 0.93496 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.22 10.24 71.98 0.74 -4.49 16 2 C 0.12 4.10 5.92 86.38 0.51 4.62 16 3 N -1.00 -40.94 2.93 -519.85 -1.53 -42.47 16 4 C 0.26 13.11 5.55 85.63 0.48 13.58 16 5 C -0.52 -25.97 6.30 25.60 0.16 -25.81 16 6 H 0.07 3.54 7.47 -2.91 -0.02 3.51 16 7 C 0.01 0.65 5.45 84.65 0.46 1.11 16 8 N -0.93 -53.41 13.29 21.45 0.28 -53.12 16 9 Si 0.96 41.09 29.54 68.60 2.03 43.11 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 S 2.79 111.62 5.96 -56.49 -0.34 111.29 16 14 O -1.00 -39.83 16.18 -128.00 -2.07 -41.90 16 15 O -1.02 -49.24 14.98 -128.00 -1.92 -51.16 16 16 N -1.00 -31.50 2.84 -515.81 -1.47 -32.97 16 17 C 0.12 3.65 6.37 86.38 0.55 4.20 16 18 C -0.19 -6.13 10.24 71.98 0.74 -5.39 16 19 C 0.13 3.05 5.34 86.38 0.46 3.51 16 20 C -0.14 -3.08 5.25 30.59 0.16 -2.92 16 21 C 0.05 1.02 5.07 86.31 0.44 1.46 16 22 N -0.53 -10.34 5.41 -883.02 -4.77 -15.11 16 23 C 0.03 0.54 5.05 86.65 0.44 0.98 16 24 C -0.12 -1.89 7.06 31.80 0.22 -1.66 16 25 C -0.13 -1.67 6.93 31.47 0.22 -1.46 16 26 C 0.03 0.48 6.69 86.44 0.58 1.06 16 27 H 0.05 1.52 8.00 -2.39 -0.02 1.50 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 30 H 0.08 2.81 7.29 -2.39 -0.02 2.79 16 31 H 0.08 2.31 6.53 -2.39 -0.02 2.29 16 32 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.02 1.33 6.71 -2.39 -0.02 1.31 16 34 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 35 H 0.07 2.28 6.87 -2.39 -0.02 2.27 16 36 H 0.11 2.43 8.09 -2.39 -0.02 2.41 16 37 H 0.06 2.66 5.39 -2.39 -0.01 2.65 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 1.78 6.58 -2.39 -0.02 1.76 16 41 H 0.10 1.99 8.11 -2.39 -0.02 1.97 16 42 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 43 H 0.05 1.47 6.39 -2.39 -0.02 1.45 16 44 H 0.04 0.73 7.78 -2.39 -0.02 0.71 16 45 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.07 1.58 7.61 -2.38 -0.02 1.56 16 47 H 0.04 0.84 7.97 -2.39 -0.02 0.82 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.05 0.69 7.55 -2.39 -0.02 0.67 16 53 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -66.27 418.25 -2.77 -69.04 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.85 Total: 24.50 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 6.15 Total: -11.20 kcal Atomic # 7 Polarization: -136.19 SS G_CDS: -7.48 Total: -143.67 kcal Atomic # 8 Polarization: -89.07 SS G_CDS: -3.99 Total: -93.06 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 111.62 SS G_CDS: -0.34 Total: 111.29 kcal Total: -66.27 -2.77 -69.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337199614.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.094 kcal (2) G-P(sol) polarization free energy of solvation -66.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds