Wall clock time and date at job start Wed Apr 1 2020 05:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.46988 * 2 1 4 4 C 1.46503 * 120.00446 * 275.00339 * 3 2 1 5 5 C 1.50700 * 109.47075 * 280.10970 * 4 3 2 6 6 H 1.08001 * 120.00111 * 4.27184 * 5 4 3 7 7 C 1.37872 * 120.00192 * 184.26639 * 5 4 3 8 8 N 1.31515 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00273 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46650 * 60.00266 * 9 7 5 11 11 H 1.48502 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47036 * 300.00651 * 9 7 5 13 13 S 1.65607 * 119.99748 * 95.00623 * 3 2 1 14 14 O 1.42106 * 106.39913 * 330.05572 * 13 3 2 15 15 O 1.42098 * 106.40352 * 197.14048 * 13 3 2 16 16 N 1.65598 * 107.22036 * 83.59568 * 13 3 2 17 17 C 1.46497 * 120.00141 * 65.33736 * 16 13 3 18 18 C 1.52996 * 109.47614 * 165.68911 * 17 16 13 19 19 C 1.53000 * 109.47610 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.46967 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.46703 * 180.02562 * 20 19 18 22 22 N 1.46907 * 109.46858 * 180.02562 * 21 20 19 23 23 C 1.48534 * 111.00068 * 52.60422 * 22 21 20 24 24 C 1.54935 * 103.22592 * 159.71802 * 23 22 21 25 25 C 1.54592 * 102.92120 * 322.58459 * 24 23 22 26 26 C 1.47901 * 110.99716 * 170.00099 * 22 21 20 27 27 H 1.08998 * 109.47227 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46863 * 299.99545 * 1 2 3 29 29 H 1.09000 * 109.47428 * 59.99444 * 1 2 3 30 30 H 1.09004 * 109.46751 * 240.00996 * 2 1 3 31 31 H 1.09000 * 109.47428 * 120.00556 * 2 1 3 32 32 H 1.08993 * 109.46950 * 40.11160 * 4 3 2 33 33 H 1.08998 * 109.46861 * 160.11209 * 4 3 2 34 34 H 0.96995 * 120.00342 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00009 * 245.34875 * 16 13 3 36 36 H 1.08999 * 109.47006 * 45.68687 * 17 16 13 37 37 H 1.09001 * 109.47267 * 285.69613 * 17 16 13 38 38 H 1.08999 * 109.47117 * 59.99844 * 18 17 16 39 39 H 1.09001 * 109.46961 * 300.00976 * 18 17 16 40 40 H 1.08991 * 109.46948 * 300.00069 * 19 18 17 41 41 H 1.09000 * 109.46427 * 59.99936 * 19 18 17 42 42 H 1.09001 * 109.47410 * 299.99866 * 20 19 18 43 43 H 1.09002 * 109.47135 * 60.00362 * 20 19 18 44 44 H 1.09001 * 109.46876 * 299.99945 * 21 20 19 45 45 H 1.09002 * 109.47232 * 60.00173 * 21 20 19 46 46 H 1.09002 * 110.66420 * 278.15283 * 23 22 21 47 47 H 1.08995 * 110.66656 * 41.28197 * 23 22 21 48 48 H 1.09005 * 110.72357 * 204.22432 * 24 23 22 49 49 H 1.08999 * 110.72304 * 80.94716 * 24 23 22 50 50 H 1.09001 * 110.30811 * 263.03884 * 25 24 23 51 51 H 1.09002 * 110.30429 * 140.87570 * 25 24 23 52 52 H 1.09001 * 109.91454 * 333.50338 * 26 22 21 53 53 H 1.08992 * 109.92074 * 94.60654 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4376 1.6939 -1.9434 6 1 4.0475 0.9121 -1.5153 7 6 3.8296 2.3121 -3.1118 8 7 3.0871 3.2643 -3.6329 9 14 5.4159 1.7982 -3.9538 10 1 5.3402 0.3603 -4.3168 11 1 5.6097 2.6098 -5.1822 12 1 6.5590 2.0164 -3.0314 13 16 2.4122 2.1201 1.4288 14 8 1.5762 1.5434 2.4226 15 8 2.4528 3.5151 1.1613 16 7 3.9615 1.6703 1.8024 17 6 5.0729 2.0890 0.9447 18 6 6.3965 1.8618 1.6776 19 6 7.5572 2.2996 0.7821 20 6 8.8807 2.0729 1.5153 21 6 10.0414 2.5114 0.6200 22 7 11.3123 2.2932 1.3238 23 6 11.4116 0.8977 1.8228 24 6 12.9341 0.7049 2.0359 25 6 13.5501 1.4801 0.8487 26 6 12.4617 2.4780 0.4117 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.3118 1.8788 -1.9110 33 1 2.1831 3.1803 -1.0654 34 1 3.3630 3.6996 -4.4547 35 1 4.1332 1.1295 2.5892 36 1 4.9677 3.1469 0.7042 37 1 5.0620 1.5046 0.0247 38 1 6.5017 0.8038 1.9181 39 1 6.4074 2.4462 2.5977 40 1 7.5465 1.7155 -0.1381 41 1 7.4517 3.3576 0.5421 42 1 8.8912 2.6574 2.4354 43 1 8.9864 1.0150 1.7557 44 1 10.0311 1.9272 -0.3002 45 1 9.9355 3.5694 0.3800 46 1 10.8742 0.7868 2.7647 47 1 11.0353 0.1955 1.0790 48 1 13.1998 -0.3511 1.9866 49 1 13.2487 1.1390 2.9849 50 1 13.7868 0.7970 0.0329 51 1 14.4455 2.0130 1.1687 52 1 12.1585 2.2707 -0.6146 53 1 12.8368 3.4985 0.4890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339035921.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:52 Heat of formation + Delta-G solvation = -120.459381 kcal Electronic energy + Delta-G solvation = -29621.342570 eV Core-core repulsion = 25652.716231 eV Total energy + Delta-G solvation = -3968.626339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.96476 -38.31854 -37.73617 -37.49494 -36.85525 -35.37051 -34.65149 -32.73982 -31.49197 -30.01864 -29.34986 -28.46974 -25.77293 -24.92991 -23.36442 -23.21209 -22.32392 -21.65233 -21.17273 -20.23286 -18.64859 -18.56016 -18.19358 -17.28763 -17.09351 -16.84194 -16.71782 -16.47220 -16.04958 -15.57079 -15.25335 -14.95134 -14.80317 -14.60334 -14.32071 -14.04589 -13.78056 -13.75566 -13.63146 -13.48660 -13.29434 -13.16189 -13.02614 -12.98035 -12.78962 -12.70696 -12.66162 -12.61749 -12.29785 -12.24343 -12.09042 -12.05580 -11.97323 -11.80590 -11.75520 -11.56414 -11.53870 -11.45923 -11.34790 -10.54397 -10.32415 -9.75717 -9.40593 -8.13256 -6.26347 -0.24445 1.44744 1.45729 1.53036 2.04749 2.44468 2.65641 3.01146 3.19063 3.49063 3.68436 3.78404 3.97216 3.98239 3.99252 4.07525 4.12773 4.27239 4.34834 4.38788 4.46542 4.53225 4.54560 4.58982 4.66617 4.69626 4.71925 4.76429 4.89387 4.94215 4.95885 4.96454 4.99335 5.01219 5.06298 5.09548 5.18031 5.20073 5.28083 5.31012 5.32393 5.41560 5.44301 5.48799 5.56244 5.81133 5.94451 5.95110 6.06534 6.15006 6.29737 6.85422 7.43269 8.95027 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.002751 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.851324 B =10175.309561 C =11880.914448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.996 5.996 4 C 0.258 3.742 5 C -0.534 4.534 6 H 0.077 0.923 7 C 0.013 3.987 8 N -0.930 5.930 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.292 1.292 12 H -0.259 1.259 13 S 2.798 3.202 14 O -1.006 7.006 15 O -1.020 7.020 16 N -1.113 6.113 17 C 0.116 3.884 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.104 4.104 21 C 0.045 3.955 22 N -0.531 5.531 23 C 0.029 3.971 24 C -0.122 4.122 25 C -0.129 4.129 26 C 0.028 3.972 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.015 0.985 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.423 0.577 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.039 0.961 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.449 -8.687 10.648 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.837 5.837 4 C 0.134 3.866 5 C -0.574 4.574 6 H 0.095 0.905 7 C -0.187 4.187 8 N -0.570 5.570 9 Si 0.776 3.224 10 H -0.192 1.192 11 H -0.218 1.218 12 H -0.183 1.183 13 S 2.806 3.194 14 O -0.990 6.990 15 O -1.004 7.004 16 N -0.876 5.876 17 C -0.011 4.011 18 C -0.150 4.150 19 C -0.159 4.159 20 C -0.142 4.142 21 C -0.083 4.083 22 N -0.255 5.255 23 C -0.098 4.098 24 C -0.160 4.160 25 C -0.167 4.167 26 C -0.100 4.100 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.060 0.940 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.099 0.901 52 H 0.057 0.943 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.834 -7.481 11.264 20.821 hybrid contribution 0.488 -0.594 -1.678 1.846 sum 16.322 -8.074 9.586 20.579 Atomic orbital electron populations 1.22198 0.96103 1.03139 1.01314 1.21229 0.94512 0.81250 1.03259 1.57614 1.79380 1.24069 1.22622 1.18741 0.96500 0.91085 0.80236 1.21775 1.07302 1.20213 1.08062 0.90457 1.25777 1.00199 0.94756 0.97942 1.70069 1.40054 1.25692 1.21181 0.85712 0.80357 0.78385 0.77971 1.19209 1.21841 1.18292 1.01150 0.73235 0.72786 0.72190 1.93530 1.66379 1.79605 1.59529 1.93526 1.87341 1.33838 1.85687 1.55555 1.23817 1.70000 1.38233 1.21408 0.86398 0.99627 0.93617 1.21685 0.91336 1.03135 0.98797 1.21489 0.94026 1.01634 0.98710 1.21519 0.91961 1.02033 0.98690 1.22323 0.89515 1.01192 0.95285 1.64828 1.02046 1.24698 1.33957 1.23317 0.97622 0.88563 1.00334 1.22504 0.93775 1.00880 0.98854 1.22407 0.98148 0.97684 0.98503 1.22947 0.91672 1.00791 0.94559 0.89142 0.93361 0.93562 0.90109 0.89566 0.96677 0.96182 0.92741 0.74143 0.93108 0.91204 0.89576 0.90414 0.92471 0.92348 0.90872 0.90945 0.95274 0.91182 0.89525 0.93974 0.89805 0.90622 0.90975 0.90123 0.94297 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 10.24 71.98 0.74 -4.41 16 2 C 0.12 4.04 6.02 86.38 0.52 4.56 16 3 N -1.00 -40.29 2.84 -519.85 -1.48 -41.77 16 4 C 0.26 12.91 5.46 85.63 0.47 13.38 16 5 C -0.53 -26.91 8.50 25.60 0.22 -26.69 16 6 H 0.08 3.60 6.47 -2.91 -0.02 3.58 16 7 C 0.01 0.67 5.46 84.65 0.46 1.13 16 8 N -0.93 -53.65 13.29 21.45 0.28 -53.36 16 9 Si 0.95 40.74 29.54 68.60 2.03 42.77 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 13 S 2.80 109.45 6.07 -56.49 -0.34 109.11 16 14 O -1.01 -39.63 17.17 -128.00 -2.20 -41.83 16 15 O -1.02 -49.05 16.01 -128.00 -2.05 -51.10 16 16 N -1.11 -33.76 6.06 -187.50 -1.14 -34.90 16 17 C 0.12 3.66 6.21 86.38 0.54 4.19 16 18 C -0.11 -2.51 5.35 30.59 0.16 -2.35 16 19 C -0.12 -2.77 5.21 30.59 0.16 -2.61 16 20 C -0.10 -1.99 4.87 30.59 0.15 -1.84 16 21 C 0.05 0.92 5.03 86.30 0.43 1.36 16 22 N -0.53 -10.15 5.40 -883.01 -4.76 -14.91 16 23 C 0.03 0.46 5.10 86.65 0.44 0.90 16 24 C -0.12 -1.53 7.06 31.80 0.22 -1.30 16 25 C -0.13 -1.66 6.93 31.47 0.22 -1.44 16 26 C 0.03 0.47 6.70 86.45 0.58 1.05 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.54 7.96 -2.38 -0.02 1.53 16 29 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 30 H 0.08 2.64 8.09 -2.38 -0.02 2.62 16 31 H 0.09 2.37 7.79 -2.39 -0.02 2.35 16 32 H 0.02 0.80 8.10 -2.39 -0.02 0.78 16 33 H 0.02 1.15 6.77 -2.39 -0.02 1.13 16 34 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 35 H 0.42 9.75 8.65 -96.74 -0.84 8.91 16 36 H 0.05 1.88 7.76 -2.39 -0.02 1.87 16 37 H 0.07 2.43 5.86 -2.39 -0.01 2.42 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.24 6.79 -2.39 -0.02 1.22 16 44 H 0.03 0.63 7.81 -2.39 -0.02 0.61 16 45 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.09 1.28 7.66 -2.39 -0.02 1.27 16 47 H 0.04 0.69 8.00 -2.39 -0.02 0.67 16 48 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.04 0.69 7.57 -2.39 -0.02 0.67 16 53 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -67.15 425.24 -4.32 -71.47 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.03 Total: 28.59 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 5.31 Total: -14.07 kcal Atomic # 7 Polarization: -137.84 SS G_CDS: -7.09 Total: -144.94 kcal Atomic # 8 Polarization: -88.68 SS G_CDS: -4.25 Total: -92.93 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 109.45 SS G_CDS: -0.34 Total: 109.11 kcal Total: -67.15 -4.32 -71.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339035921.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.987 kcal (2) G-P(sol) polarization free energy of solvation -67.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds