Wall clock time and date at job start Wed Apr 1 2020 05:25:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46494 * 109.47112 * 2 1
4 4 C 1.46499 * 120.00078 * 280.68465 * 3 2 1
5 5 C 1.53008 * 109.46882 * 269.72297 * 4 3 2
6 6 C 1.34784 * 119.99898 * 100.40470 * 3 2 1
7 7 O 1.21547 * 119.99795 * 177.13581 * 6 3 2
8 8 C 1.47845 * 119.99862 * 357.13555 * 6 3 2
9 9 C 1.39570 * 120.14415 * 322.13622 * 8 6 3
10 10 C 1.37965 * 119.85148 * 179.74739 * 9 8 6
11 11 C 1.38358 * 120.14291 * 0.53482 * 10 9 8
12 12 C 1.50702 * 119.85241 * 179.72237 * 11 10 9
13 13 N 1.46500 * 109.46696 * 270.01905 * 12 11 10
14 14 C 1.34781 * 119.99936 * 180.02562 * 13 12 11
15 15 O 1.21588 * 119.99557 * 359.97438 * 14 13 12
16 16 N 1.34774 * 120.00153 * 179.97438 * 14 13 12
17 17 C 1.46497 * 119.99676 * 179.97438 * 16 14 13
18 18 C 1.53010 * 109.46935 * 180.02562 * 17 16 14
19 19 C 1.50693 * 109.46804 * 179.97438 * 18 17 16
20 20 H 1.07994 * 120.00558 * 0.02562 * 19 18 17
21 21 C 1.37884 * 119.99384 * 179.97438 * 19 18 17
22 22 N 1.31512 * 120.00329 * 0.02562 * 21 19 18
23 23 Si 1.86801 * 119.99803 * 179.97438 * 21 19 18
24 24 H 1.48503 * 109.46957 * 90.00403 * 23 21 19
25 25 H 1.48503 * 109.47369 * 210.00306 * 23 21 19
26 26 H 1.48503 * 109.47274 * 330.00657 * 23 21 19
27 27 C 1.38364 * 120.29157 * 359.73944 * 11 10 9
28 28 C 1.37956 * 120.14733 * 359.97438 * 27 11 10
29 29 H 1.09004 * 109.46829 * 80.75440 * 1 2 3
30 30 H 1.09002 * 109.46933 * 200.74796 * 1 2 3
31 31 H 1.08999 * 109.47249 * 320.74819 * 1 2 3
32 32 H 1.09004 * 109.47138 * 239.99835 * 2 1 3
33 33 H 1.09002 * 109.47053 * 120.00264 * 2 1 3
34 34 H 1.08991 * 109.47368 * 29.72056 * 4 3 2
35 35 H 1.08999 * 109.47190 * 149.72923 * 4 3 2
36 36 H 1.09001 * 109.46951 * 299.99977 * 5 4 3
37 37 H 1.08995 * 109.46982 * 59.99907 * 5 4 3
38 38 H 1.08998 * 109.46877 * 180.02562 * 5 4 3
39 39 H 1.07999 * 120.07666 * 359.97438 * 9 8 6
40 40 H 1.08001 * 119.92870 * 180.27351 * 10 9 8
41 41 H 1.09003 * 109.47160 * 30.01835 * 12 11 10
42 42 H 1.08994 * 109.46699 * 150.02044 * 12 11 10
43 43 H 0.96998 * 120.00095 * 359.97438 * 13 12 11
44 44 H 0.96998 * 119.99878 * 359.97438 * 16 14 13
45 45 H 1.09008 * 109.47264 * 299.99688 * 17 16 14
46 46 H 1.08994 * 109.47308 * 59.99866 * 17 16 14
47 47 H 1.09001 * 109.46779 * 300.00179 * 18 17 16
48 48 H 1.08997 * 109.46788 * 60.00178 * 18 17 16
49 49 H 0.96997 * 120.00239 * 179.97438 * 22 21 19
50 50 H 1.07996 * 119.92331 * 180.02562 * 27 11 10
51 51 H 1.07993 * 120.07314 * 179.97438 * 28 27 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.0407 2.1502 -1.2467
5 6 3.3876 1.9508 -1.9447
6 6 2.4417 1.9462 1.1481
7 8 2.8954 3.0738 1.1392
8 6 2.3543 1.1945 2.4181
9 6 1.2561 0.3710 2.6710
10 6 1.1832 -0.3318 3.8560
11 6 2.1903 -0.2130 4.7973
12 6 2.1009 -0.9789 6.0921
13 7 1.4035 -0.1670 7.0925
14 6 1.2062 -0.6511 8.3347
15 8 1.6066 -1.7619 8.6250
16 7 0.5651 0.0959 9.2552
17 6 0.3502 -0.4306 10.6053
18 6 -0.3954 0.6085 11.4452
19 6 -0.6171 0.0666 12.8338
20 1 -0.2614 -0.9200 13.0916
21 6 -1.2731 0.8309 13.7754
22 7 -1.7057 2.0325 13.4616
23 14 -1.5485 0.1590 15.4965
24 1 -0.3987 0.5269 16.3614
25 1 -2.7958 0.7357 16.0594
26 1 -1.6698 -1.3199 15.4370
27 6 3.2789 0.6060 4.5552
28 6 3.3669 1.3097 3.3719
29 1 -0.3633 0.1651 -1.0144
30 1 -0.3633 -0.9610 0.3641
31 1 -0.3634 0.7958 0.6502
32 1 1.8934 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.2387 1.8067 -1.8999
35 1 1.9001 3.2078 -1.0238
36 1 4.1897 2.2943 -1.2914
37 1 3.5283 0.8932 -2.1676
38 1 3.4045 2.5234 -2.8721
39 1 0.4670 0.2813 1.9392
40 1 0.3362 -0.9728 4.0511
41 1 1.5510 -1.9058 5.9288
42 1 3.1051 -1.2099 6.4475
43 1 1.0845 0.7193 6.8610
44 1 0.2460 0.9822 9.0237
45 1 -0.2417 -1.3443 10.5490
46 1 1.3127 -0.6492 11.0675
47 1 0.1960 1.5224 11.5015
48 1 -1.3580 0.8266 10.9828
49 1 -2.1676 2.5700 14.1239
50 1 4.0617 0.6940 5.2939
51 1 4.2168 1.9490 3.1843
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000343424633.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:17
Heat of formation + Delta-G solvation = -40.507864 kcal
Electronic energy + Delta-G solvation = -29091.285379 eV
Core-core repulsion = 24990.682046 eV
Total energy + Delta-G solvation = -4100.603333 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.04765 -39.73085 -38.83506 -36.80576 -35.32914 -34.52785 -33.12685 -32.79409
-31.63434 -31.13639 -30.16327 -29.40790 -26.77590 -24.65130 -24.21677 -23.82078
-23.06174 -21.98737 -21.03332 -20.55859 -19.77845 -18.24261 -17.91477 -17.19184
-16.45529 -16.29088 -15.89998 -15.69502 -15.60109 -15.21639 -14.90748 -14.59556
-14.47632 -14.16724 -14.10630 -13.83730 -13.55226 -13.52443 -13.43750 -13.29947
-13.07926 -12.83850 -12.54234 -12.48102 -12.32239 -12.26266 -11.80766 -11.71056
-11.49354 -11.29505 -11.17566 -11.01976 -10.62090 -10.30700 -10.30302 -10.00480
-9.57684 -9.38276 -9.30182 -9.25014 -9.13092 -9.05691 -8.47443 -8.24353
-6.07828 -4.10471 0.43001 0.96372 2.29298 2.45536 3.03115 3.30758
3.36834 3.40905 3.48600 3.58092 3.93819 4.22232 4.35599 4.41326
4.43666 4.51015 4.57246 4.59785 4.73197 4.77680 4.80981 4.92191
4.96051 4.97378 5.08847 5.18374 5.29305 5.29982 5.31961 5.37239
5.43925 5.55542 5.60945 5.63909 5.71424 5.84477 5.90223 6.06086
6.18281 6.30243 6.40988 6.44435 6.54302 6.78804 6.84733 7.00488
7.22780 7.58146 7.64801 7.69747 7.91292 8.26986 8.42980 8.93718
8.99392 9.54232 11.03798
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.023447 B = 0.001479 C = 0.001462
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.903911 B =18932.834028 C =19142.324458
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.092 3.908
3 N -0.609 5.609
4 C 0.111 3.889
5 C -0.168 4.168
6 C 0.560 3.440
7 O -0.532 6.532
8 C -0.129 4.129
9 C -0.109 4.109
10 C -0.107 4.107
11 C -0.079 4.079
12 C 0.178 3.822
13 N -0.750 5.750
14 C 0.699 3.301
15 O -0.598 6.598
16 N -0.738 5.738
17 C 0.140 3.860
18 C 0.012 3.988
19 C -0.521 4.521
20 H 0.060 0.940
21 C 0.059 3.941
22 N -0.894 5.894
23 Si 0.897 3.103
24 H -0.280 1.280
25 H -0.286 1.286
26 H -0.272 1.272
27 C -0.105 4.105
28 C -0.067 4.067
29 H 0.063 0.937
30 H 0.074 0.926
31 H 0.067 0.933
32 H 0.078 0.922
33 H 0.094 0.906
34 H 0.078 0.922
35 H 0.084 0.916
36 H 0.060 0.940
37 H 0.055 0.945
38 H 0.066 0.934
39 H 0.146 0.854
40 H 0.132 0.868
41 H 0.075 0.925
42 H 0.075 0.925
43 H 0.396 0.604
44 H 0.394 0.606
45 H 0.054 0.946
46 H 0.054 0.946
47 H 0.022 0.978
48 H 0.022 0.978
49 H 0.262 0.738
50 H 0.133 0.867
51 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.086 -2.571 -34.343 35.161
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C -0.031 4.031
3 N -0.342 5.342
4 C -0.011 4.011
5 C -0.226 4.226
6 C 0.349 3.651
7 O -0.408 6.408
8 C -0.133 4.133
9 C -0.127 4.127
10 C -0.125 4.125
11 C -0.080 4.080
12 C 0.054 3.946
13 N -0.408 5.408
14 C 0.399 3.601
15 O -0.477 6.477
16 N -0.391 5.391
17 C 0.017 3.983
18 C -0.025 4.025
19 C -0.560 4.560
20 H 0.078 0.922
21 C -0.143 4.143
22 N -0.533 5.533
23 Si 0.725 3.275
24 H -0.206 1.206
25 H -0.212 1.212
26 H -0.197 1.197
27 C -0.123 4.123
28 C -0.085 4.085
29 H 0.082 0.918
30 H 0.093 0.907
31 H 0.086 0.914
32 H 0.097 0.903
33 H 0.112 0.888
34 H 0.096 0.904
35 H 0.102 0.898
36 H 0.079 0.921
37 H 0.074 0.926
38 H 0.085 0.915
39 H 0.163 0.837
40 H 0.150 0.850
41 H 0.093 0.907
42 H 0.093 0.907
43 H 0.229 0.771
44 H 0.227 0.773
45 H 0.072 0.928
46 H 0.072 0.928
47 H 0.040 0.960
48 H 0.040 0.960
49 H 0.071 0.929
50 H 0.151 0.849
51 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 7.600 -2.875 -33.977 34.935
hybrid contribution -0.550 0.564 0.666 1.031
sum 7.050 -2.311 -33.311 34.127
Atomic orbital electron populations
1.22398 0.95635 1.03007 1.02881 1.21910 0.94589 0.82380 1.04186
1.47961 1.64050 1.14174 1.08022 1.21436 0.97896 0.97380 0.84386
1.22121 0.97861 1.01896 1.00714 1.18478 0.77200 0.85926 0.83488
1.90793 1.44792 1.18769 1.86485 1.19879 0.97647 1.00396 0.95336
1.22002 0.97851 0.94775 0.98026 1.21108 0.98549 0.99762 0.93115
1.20205 0.94690 0.97216 0.95874 1.19993 0.98257 0.92841 0.83518
1.45135 1.64188 1.20641 1.10804 1.16049 0.79343 0.84542 0.80187
1.90893 1.57062 1.19879 1.79881 1.45538 1.60847 1.19671 1.13058
1.21599 1.00048 0.98425 0.78189 1.19333 0.95323 0.93697 0.94176
1.21052 1.37157 1.02129 0.95616 0.92209 1.24995 0.95422 0.94849
0.99022 1.69955 1.38788 1.09820 1.34755 0.86512 0.77620 0.79276
0.84137 1.20573 1.21197 1.19717 1.21132 0.98254 0.95968 0.96983
1.21197 0.97933 0.97188 0.92216 0.91803 0.90719 0.91387 0.90340
0.88804 0.90402 0.89781 0.92094 0.92585 0.91481 0.83661 0.84968
0.90658 0.90674 0.77081 0.77345 0.92765 0.92761 0.95957 0.95957
0.92876 0.84873 0.84989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -0.57 8.59 37.16 0.32 -0.25 16
2 C 0.09 0.38 5.57 -4.04 -0.02 0.36 16
3 N -0.61 -4.15 2.48 -174.80 -0.43 -4.59 16
4 C 0.11 0.64 6.09 -4.04 -0.02 0.62 16
5 C -0.17 -0.90 10.24 37.16 0.38 -0.51 16
6 C 0.56 5.53 7.35 -12.33 -0.09 5.44 16
7 O -0.53 -7.14 16.49 5.32 0.09 -7.05 16
8 C -0.13 -1.14 5.15 -104.97 -0.54 -1.68 16
9 C -0.11 -0.76 7.45 -39.18 -0.29 -1.05 16
10 C -0.11 -0.78 9.68 -39.64 -0.38 -1.16 16
11 C -0.08 -0.66 5.25 -104.53 -0.55 -1.21 16
12 C 0.18 1.85 5.79 -5.19 -0.03 1.82 16
13 N -0.75 -9.24 5.55 -66.41 -0.37 -9.61 16
14 C 0.70 12.05 8.57 -86.92 -0.74 11.31 16
15 O -0.60 -12.69 16.34 5.29 0.09 -12.60 16
16 N -0.74 -13.04 5.56 -65.22 -0.36 -13.40 16
17 C 0.14 3.02 5.61 -4.04 -0.02 3.00 16
18 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16
19 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16
20 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16
21 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16
22 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16
23 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16
24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16
27 C -0.10 -0.87 9.68 -39.64 -0.38 -1.25 16
28 C -0.07 -0.59 9.62 -39.19 -0.38 -0.97 16
29 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16
30 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16
31 H 0.07 0.29 6.73 -51.93 -0.35 -0.06 16
32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16
33 H 0.09 0.42 5.20 -51.93 -0.27 0.15 16
34 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16
35 H 0.08 0.62 7.47 -51.93 -0.39 0.23 16
36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
37 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16
38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
39 H 0.15 0.76 3.25 -52.49 -0.17 0.59 16
40 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16
41 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16
42 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16
43 H 0.40 4.05 8.48 -40.82 -0.35 3.70 16
44 H 0.39 6.01 8.49 -40.82 -0.35 5.66 16
45 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16
46 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16
47 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16
48 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
49 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
50 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16
51 H 0.13 1.14 8.04 -52.49 -0.42 0.72 16
LS Contribution 420.34 15.07 6.33 6.33
Total: -1.00 -35.14 420.34 -10.42 -45.55
By element:
Atomic # 1 Polarization: 11.21 SS G_CDS: -8.17 Total: 3.05 kcal
Atomic # 6 Polarization: 4.67 SS G_CDS: -3.31 Total: 1.36 kcal
Atomic # 7 Polarization: -52.62 SS G_CDS: -0.43 Total: -53.05 kcal
Atomic # 8 Polarization: -19.82 SS G_CDS: 0.17 Total: -19.65 kcal
Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal
Total LS contribution 6.33 Total: 6.33 kcal
Total: -35.14 -10.42 -45.55 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000343424633.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.047 kcal
(2) G-P(sol) polarization free energy of solvation -35.135 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.088 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.555 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.508 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds