Wall clock time and date at job start Wed Apr 1 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47112 * 2 1 4 4 C 1.46499 * 120.00078 * 280.68465 * 3 2 1 5 5 C 1.53008 * 109.46882 * 269.72297 * 4 3 2 6 6 C 1.34784 * 119.99898 * 100.40470 * 3 2 1 7 7 O 1.21547 * 119.99795 * 177.13581 * 6 3 2 8 8 C 1.47845 * 119.99862 * 357.13555 * 6 3 2 9 9 C 1.39570 * 120.14415 * 322.13622 * 8 6 3 10 10 C 1.37965 * 119.85148 * 179.74739 * 9 8 6 11 11 C 1.38358 * 120.14291 * 0.53482 * 10 9 8 12 12 C 1.50702 * 119.85241 * 179.72237 * 11 10 9 13 13 N 1.46500 * 109.46696 * 270.01905 * 12 11 10 14 14 C 1.34781 * 119.99936 * 180.02562 * 13 12 11 15 15 O 1.21588 * 119.99557 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00153 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99676 * 179.97438 * 16 14 13 18 18 C 1.53010 * 109.46935 * 180.02562 * 17 16 14 19 19 C 1.50693 * 109.46804 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00558 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99384 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00329 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99803 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46957 * 90.00403 * 23 21 19 25 25 H 1.48503 * 109.47369 * 210.00306 * 23 21 19 26 26 H 1.48503 * 109.47274 * 330.00657 * 23 21 19 27 27 C 1.38364 * 120.29157 * 359.73944 * 11 10 9 28 28 C 1.37956 * 120.14733 * 359.97438 * 27 11 10 29 29 H 1.09004 * 109.46829 * 80.75440 * 1 2 3 30 30 H 1.09002 * 109.46933 * 200.74796 * 1 2 3 31 31 H 1.08999 * 109.47249 * 320.74819 * 1 2 3 32 32 H 1.09004 * 109.47138 * 239.99835 * 2 1 3 33 33 H 1.09002 * 109.47053 * 120.00264 * 2 1 3 34 34 H 1.08991 * 109.47368 * 29.72056 * 4 3 2 35 35 H 1.08999 * 109.47190 * 149.72923 * 4 3 2 36 36 H 1.09001 * 109.46951 * 299.99977 * 5 4 3 37 37 H 1.08995 * 109.46982 * 59.99907 * 5 4 3 38 38 H 1.08998 * 109.46877 * 180.02562 * 5 4 3 39 39 H 1.07999 * 120.07666 * 359.97438 * 9 8 6 40 40 H 1.08001 * 119.92870 * 180.27351 * 10 9 8 41 41 H 1.09003 * 109.47160 * 30.01835 * 12 11 10 42 42 H 1.08994 * 109.46699 * 150.02044 * 12 11 10 43 43 H 0.96998 * 120.00095 * 359.97438 * 13 12 11 44 44 H 0.96998 * 119.99878 * 359.97438 * 16 14 13 45 45 H 1.09008 * 109.47264 * 299.99688 * 17 16 14 46 46 H 1.08994 * 109.47308 * 59.99866 * 17 16 14 47 47 H 1.09001 * 109.46779 * 300.00179 * 18 17 16 48 48 H 1.08997 * 109.46788 * 60.00178 * 18 17 16 49 49 H 0.96997 * 120.00239 * 179.97438 * 22 21 19 50 50 H 1.07996 * 119.92331 * 180.02562 * 27 11 10 51 51 H 1.07993 * 120.07314 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0407 2.1502 -1.2467 5 6 3.3876 1.9508 -1.9447 6 6 2.4417 1.9462 1.1481 7 8 2.8954 3.0738 1.1392 8 6 2.3543 1.1945 2.4181 9 6 1.2561 0.3710 2.6710 10 6 1.1832 -0.3318 3.8560 11 6 2.1903 -0.2130 4.7973 12 6 2.1009 -0.9789 6.0921 13 7 1.4035 -0.1670 7.0925 14 6 1.2062 -0.6511 8.3347 15 8 1.6066 -1.7619 8.6250 16 7 0.5651 0.0959 9.2552 17 6 0.3502 -0.4306 10.6053 18 6 -0.3954 0.6085 11.4452 19 6 -0.6171 0.0666 12.8338 20 1 -0.2614 -0.9200 13.0916 21 6 -1.2731 0.8309 13.7754 22 7 -1.7057 2.0325 13.4616 23 14 -1.5485 0.1590 15.4965 24 1 -0.3987 0.5269 16.3614 25 1 -2.7958 0.7357 16.0594 26 1 -1.6698 -1.3199 15.4370 27 6 3.2789 0.6060 4.5552 28 6 3.3669 1.3097 3.3719 29 1 -0.3633 0.1651 -1.0144 30 1 -0.3633 -0.9610 0.3641 31 1 -0.3634 0.7958 0.6502 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.2387 1.8067 -1.8999 35 1 1.9001 3.2078 -1.0238 36 1 4.1897 2.2943 -1.2914 37 1 3.5283 0.8932 -2.1676 38 1 3.4045 2.5234 -2.8721 39 1 0.4670 0.2813 1.9392 40 1 0.3362 -0.9728 4.0511 41 1 1.5510 -1.9058 5.9288 42 1 3.1051 -1.2099 6.4475 43 1 1.0845 0.7193 6.8610 44 1 0.2460 0.9822 9.0237 45 1 -0.2417 -1.3443 10.5490 46 1 1.3127 -0.6492 11.0675 47 1 0.1960 1.5224 11.5015 48 1 -1.3580 0.8266 10.9828 49 1 -2.1676 2.5700 14.1239 50 1 4.0617 0.6940 5.2939 51 1 4.2168 1.9490 3.1843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343424633.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:17 Heat of formation + Delta-G solvation = -40.507864 kcal Electronic energy + Delta-G solvation = -29091.285379 eV Core-core repulsion = 24990.682046 eV Total energy + Delta-G solvation = -4100.603333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.04765 -39.73085 -38.83506 -36.80576 -35.32914 -34.52785 -33.12685 -32.79409 -31.63434 -31.13639 -30.16327 -29.40790 -26.77590 -24.65130 -24.21677 -23.82078 -23.06174 -21.98737 -21.03332 -20.55859 -19.77845 -18.24261 -17.91477 -17.19184 -16.45529 -16.29088 -15.89998 -15.69502 -15.60109 -15.21639 -14.90748 -14.59556 -14.47632 -14.16724 -14.10630 -13.83730 -13.55226 -13.52443 -13.43750 -13.29947 -13.07926 -12.83850 -12.54234 -12.48102 -12.32239 -12.26266 -11.80766 -11.71056 -11.49354 -11.29505 -11.17566 -11.01976 -10.62090 -10.30700 -10.30302 -10.00480 -9.57684 -9.38276 -9.30182 -9.25014 -9.13092 -9.05691 -8.47443 -8.24353 -6.07828 -4.10471 0.43001 0.96372 2.29298 2.45536 3.03115 3.30758 3.36834 3.40905 3.48600 3.58092 3.93819 4.22232 4.35599 4.41326 4.43666 4.51015 4.57246 4.59785 4.73197 4.77680 4.80981 4.92191 4.96051 4.97378 5.08847 5.18374 5.29305 5.29982 5.31961 5.37239 5.43925 5.55542 5.60945 5.63909 5.71424 5.84477 5.90223 6.06086 6.18281 6.30243 6.40988 6.44435 6.54302 6.78804 6.84733 7.00488 7.22780 7.58146 7.64801 7.69747 7.91292 8.26986 8.42980 8.93718 8.99392 9.54232 11.03798 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023447 B = 0.001479 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.903911 B =18932.834028 C =19142.324458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 N -0.609 5.609 4 C 0.111 3.889 5 C -0.168 4.168 6 C 0.560 3.440 7 O -0.532 6.532 8 C -0.129 4.129 9 C -0.109 4.109 10 C -0.107 4.107 11 C -0.079 4.079 12 C 0.178 3.822 13 N -0.750 5.750 14 C 0.699 3.301 15 O -0.598 6.598 16 N -0.738 5.738 17 C 0.140 3.860 18 C 0.012 3.988 19 C -0.521 4.521 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.272 1.272 27 C -0.105 4.105 28 C -0.067 4.067 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.396 0.604 44 H 0.394 0.606 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.022 0.978 48 H 0.022 0.978 49 H 0.262 0.738 50 H 0.133 0.867 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.086 -2.571 -34.343 35.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.031 4.031 3 N -0.342 5.342 4 C -0.011 4.011 5 C -0.226 4.226 6 C 0.349 3.651 7 O -0.408 6.408 8 C -0.133 4.133 9 C -0.127 4.127 10 C -0.125 4.125 11 C -0.080 4.080 12 C 0.054 3.946 13 N -0.408 5.408 14 C 0.399 3.601 15 O -0.477 6.477 16 N -0.391 5.391 17 C 0.017 3.983 18 C -0.025 4.025 19 C -0.560 4.560 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.123 4.123 28 C -0.085 4.085 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.229 0.771 44 H 0.227 0.773 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.071 0.929 50 H 0.151 0.849 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.600 -2.875 -33.977 34.935 hybrid contribution -0.550 0.564 0.666 1.031 sum 7.050 -2.311 -33.311 34.127 Atomic orbital electron populations 1.22398 0.95635 1.03007 1.02881 1.21910 0.94589 0.82380 1.04186 1.47961 1.64050 1.14174 1.08022 1.21436 0.97896 0.97380 0.84386 1.22121 0.97861 1.01896 1.00714 1.18478 0.77200 0.85926 0.83488 1.90793 1.44792 1.18769 1.86485 1.19879 0.97647 1.00396 0.95336 1.22002 0.97851 0.94775 0.98026 1.21108 0.98549 0.99762 0.93115 1.20205 0.94690 0.97216 0.95874 1.19993 0.98257 0.92841 0.83518 1.45135 1.64188 1.20641 1.10804 1.16049 0.79343 0.84542 0.80187 1.90893 1.57062 1.19879 1.79881 1.45538 1.60847 1.19671 1.13058 1.21599 1.00048 0.98425 0.78189 1.19333 0.95323 0.93697 0.94176 1.21052 1.37157 1.02129 0.95616 0.92209 1.24995 0.95422 0.94849 0.99022 1.69955 1.38788 1.09820 1.34755 0.86512 0.77620 0.79276 0.84137 1.20573 1.21197 1.19717 1.21132 0.98254 0.95968 0.96983 1.21197 0.97933 0.97188 0.92216 0.91803 0.90719 0.91387 0.90340 0.88804 0.90402 0.89781 0.92094 0.92585 0.91481 0.83661 0.84968 0.90658 0.90674 0.77081 0.77345 0.92765 0.92761 0.95957 0.95957 0.92876 0.84873 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 8.59 37.16 0.32 -0.25 16 2 C 0.09 0.38 5.57 -4.04 -0.02 0.36 16 3 N -0.61 -4.15 2.48 -174.80 -0.43 -4.59 16 4 C 0.11 0.64 6.09 -4.04 -0.02 0.62 16 5 C -0.17 -0.90 10.24 37.16 0.38 -0.51 16 6 C 0.56 5.53 7.35 -12.33 -0.09 5.44 16 7 O -0.53 -7.14 16.49 5.32 0.09 -7.05 16 8 C -0.13 -1.14 5.15 -104.97 -0.54 -1.68 16 9 C -0.11 -0.76 7.45 -39.18 -0.29 -1.05 16 10 C -0.11 -0.78 9.68 -39.64 -0.38 -1.16 16 11 C -0.08 -0.66 5.25 -104.53 -0.55 -1.21 16 12 C 0.18 1.85 5.79 -5.19 -0.03 1.82 16 13 N -0.75 -9.24 5.55 -66.41 -0.37 -9.61 16 14 C 0.70 12.05 8.57 -86.92 -0.74 11.31 16 15 O -0.60 -12.69 16.34 5.29 0.09 -12.60 16 16 N -0.74 -13.04 5.56 -65.22 -0.36 -13.40 16 17 C 0.14 3.02 5.61 -4.04 -0.02 3.00 16 18 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 19 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 23 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.10 -0.87 9.68 -39.64 -0.38 -1.25 16 28 C -0.07 -0.59 9.62 -39.19 -0.38 -0.97 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.29 6.73 -51.93 -0.35 -0.06 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.42 5.20 -51.93 -0.27 0.15 16 34 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 35 H 0.08 0.62 7.47 -51.93 -0.39 0.23 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.15 0.76 3.25 -52.49 -0.17 0.59 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 43 H 0.40 4.05 8.48 -40.82 -0.35 3.70 16 44 H 0.39 6.01 8.49 -40.82 -0.35 5.66 16 45 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 46 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 51 H 0.13 1.14 8.04 -52.49 -0.42 0.72 16 LS Contribution 420.34 15.07 6.33 6.33 Total: -1.00 -35.14 420.34 -10.42 -45.55 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.17 Total: 3.05 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -3.31 Total: 1.36 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.43 Total: -53.05 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: 0.17 Total: -19.65 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.14 -10.42 -45.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343424633.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.047 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds