Wall clock time and date at job start Wed Apr 1 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47112 * 2 1 4 4 C 1.46499 * 120.00078 * 280.68465 * 3 2 1 5 5 C 1.53008 * 109.46882 * 269.72297 * 4 3 2 6 6 C 1.34784 * 119.99898 * 100.40470 * 3 2 1 7 7 O 1.21547 * 119.99795 * 177.13581 * 6 3 2 8 8 C 1.47845 * 119.99862 * 357.13555 * 6 3 2 9 9 C 1.39570 * 120.14415 * 322.13622 * 8 6 3 10 10 C 1.37965 * 119.85148 * 179.74739 * 9 8 6 11 11 C 1.38358 * 120.14291 * 0.53482 * 10 9 8 12 12 C 1.50702 * 119.85241 * 179.72237 * 11 10 9 13 13 N 1.46500 * 109.46696 * 270.01905 * 12 11 10 14 14 C 1.34781 * 119.99936 * 180.02562 * 13 12 11 15 15 O 1.21588 * 119.99557 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00153 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99676 * 179.97438 * 16 14 13 18 18 C 1.53010 * 109.46935 * 180.02562 * 17 16 14 19 19 C 1.50693 * 109.46804 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00558 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99384 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00329 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99803 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46957 * 90.00403 * 23 21 19 25 25 H 1.48503 * 109.47369 * 210.00306 * 23 21 19 26 26 H 1.48503 * 109.47274 * 330.00657 * 23 21 19 27 27 C 1.38364 * 120.29157 * 359.73944 * 11 10 9 28 28 C 1.37956 * 120.14733 * 359.97438 * 27 11 10 29 29 H 1.09004 * 109.46829 * 80.75440 * 1 2 3 30 30 H 1.09002 * 109.46933 * 200.74796 * 1 2 3 31 31 H 1.08999 * 109.47249 * 320.74819 * 1 2 3 32 32 H 1.09004 * 109.47138 * 239.99835 * 2 1 3 33 33 H 1.09002 * 109.47053 * 120.00264 * 2 1 3 34 34 H 1.08991 * 109.47368 * 29.72056 * 4 3 2 35 35 H 1.08999 * 109.47190 * 149.72923 * 4 3 2 36 36 H 1.09001 * 109.46951 * 299.99977 * 5 4 3 37 37 H 1.08995 * 109.46982 * 59.99907 * 5 4 3 38 38 H 1.08998 * 109.46877 * 180.02562 * 5 4 3 39 39 H 1.07999 * 120.07666 * 359.97438 * 9 8 6 40 40 H 1.08001 * 119.92870 * 180.27351 * 10 9 8 41 41 H 1.09003 * 109.47160 * 30.01835 * 12 11 10 42 42 H 1.08994 * 109.46699 * 150.02044 * 12 11 10 43 43 H 0.96998 * 120.00095 * 359.97438 * 13 12 11 44 44 H 0.96998 * 119.99878 * 359.97438 * 16 14 13 45 45 H 1.09008 * 109.47264 * 299.99688 * 17 16 14 46 46 H 1.08994 * 109.47308 * 59.99866 * 17 16 14 47 47 H 1.09001 * 109.46779 * 300.00179 * 18 17 16 48 48 H 1.08997 * 109.46788 * 60.00178 * 18 17 16 49 49 H 0.96997 * 120.00239 * 179.97438 * 22 21 19 50 50 H 1.07996 * 119.92331 * 180.02562 * 27 11 10 51 51 H 1.07993 * 120.07314 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0407 2.1502 -1.2467 5 6 3.3876 1.9508 -1.9447 6 6 2.4417 1.9462 1.1481 7 8 2.8954 3.0738 1.1392 8 6 2.3543 1.1945 2.4181 9 6 1.2561 0.3710 2.6710 10 6 1.1832 -0.3318 3.8560 11 6 2.1903 -0.2130 4.7973 12 6 2.1009 -0.9789 6.0921 13 7 1.4035 -0.1670 7.0925 14 6 1.2062 -0.6511 8.3347 15 8 1.6066 -1.7619 8.6250 16 7 0.5651 0.0959 9.2552 17 6 0.3502 -0.4306 10.6053 18 6 -0.3954 0.6085 11.4452 19 6 -0.6171 0.0666 12.8338 20 1 -0.2614 -0.9200 13.0916 21 6 -1.2731 0.8309 13.7754 22 7 -1.7057 2.0325 13.4616 23 14 -1.5485 0.1590 15.4965 24 1 -0.3987 0.5269 16.3614 25 1 -2.7958 0.7357 16.0594 26 1 -1.6698 -1.3199 15.4370 27 6 3.2789 0.6060 4.5552 28 6 3.3669 1.3097 3.3719 29 1 -0.3633 0.1651 -1.0144 30 1 -0.3633 -0.9610 0.3641 31 1 -0.3634 0.7958 0.6502 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.2387 1.8067 -1.8999 35 1 1.9001 3.2078 -1.0238 36 1 4.1897 2.2943 -1.2914 37 1 3.5283 0.8932 -2.1676 38 1 3.4045 2.5234 -2.8721 39 1 0.4670 0.2813 1.9392 40 1 0.3362 -0.9728 4.0511 41 1 1.5510 -1.9058 5.9288 42 1 3.1051 -1.2099 6.4475 43 1 1.0845 0.7193 6.8610 44 1 0.2460 0.9822 9.0237 45 1 -0.2417 -1.3443 10.5490 46 1 1.3127 -0.6492 11.0675 47 1 0.1960 1.5224 11.5015 48 1 -1.3580 0.8266 10.9828 49 1 -2.1676 2.5700 14.1239 50 1 4.0617 0.6940 5.2939 51 1 4.2168 1.9490 3.1843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343424633.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:16 Heat of formation + Delta-G solvation = -63.230370 kcal Electronic energy + Delta-G solvation = -29092.270701 eV Core-core repulsion = 24990.682046 eV Total energy + Delta-G solvation = -4101.588655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.70984 -40.98620 -39.64423 -37.43700 -36.75886 -35.87167 -34.79835 -33.65461 -32.48801 -31.77531 -31.24113 -30.53711 -27.79809 -26.36554 -24.70805 -24.43721 -23.69682 -22.99539 -22.53812 -21.95159 -20.35892 -19.55420 -18.51326 -18.40803 -17.85046 -17.39502 -16.84083 -16.59014 -16.48684 -16.38795 -16.10532 -15.70227 -15.34352 -15.22999 -15.08841 -14.91015 -14.64117 -14.44162 -14.26621 -14.06094 -13.87955 -13.64696 -13.45263 -13.42536 -13.19172 -12.97635 -12.91251 -12.78251 -12.50880 -12.44845 -12.21463 -12.12092 -11.96184 -11.81775 -11.67048 -11.49978 -11.24380 -11.01835 -10.58991 -10.34188 -10.02760 -9.92075 -9.75310 -9.70419 -8.22331 -6.32520 -0.25899 0.34545 1.43328 1.43860 1.53123 1.55920 1.86090 1.95966 2.18715 2.42865 2.72696 3.12653 3.34461 3.47466 3.62827 3.76271 3.89490 4.04335 4.12296 4.18180 4.26702 4.35015 4.40243 4.46468 4.48847 4.52508 4.55187 4.63921 4.65135 4.73928 4.81632 4.89093 4.89505 4.97360 4.99706 5.03018 5.20199 5.24781 5.27911 5.33262 5.36409 5.45477 5.51438 5.53811 5.55751 5.61753 5.80553 5.82206 6.04874 6.19095 6.26198 6.80909 7.01628 7.12864 7.36845 7.60923 8.89493 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023447 B = 0.001479 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.903911 B =18932.834028 C =19142.324458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 N -0.602 5.602 4 C 0.107 3.893 5 C -0.162 4.162 6 C 0.552 3.448 7 O -0.580 6.580 8 C -0.138 4.138 9 C -0.098 4.098 10 C -0.101 4.101 11 C -0.079 4.079 12 C 0.180 3.820 13 N -0.730 5.730 14 C 0.700 3.300 15 O -0.638 6.638 16 N -0.734 5.734 17 C 0.161 3.839 18 C 0.022 3.978 19 C -0.546 4.546 20 H 0.060 0.940 21 C 0.007 3.993 22 N -0.927 5.927 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.265 1.265 27 C -0.104 4.104 28 C -0.079 4.079 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.166 0.834 40 H 0.151 0.849 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.409 0.591 44 H 0.406 0.594 45 H 0.045 0.955 46 H 0.043 0.957 47 H 0.008 0.992 48 H 0.009 0.991 49 H 0.265 0.735 50 H 0.140 0.860 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 -3.910 -35.548 36.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.035 4.035 3 N -0.333 5.333 4 C -0.015 4.015 5 C -0.220 4.220 6 C 0.342 3.658 7 O -0.461 6.461 8 C -0.141 4.141 9 C -0.116 4.116 10 C -0.119 4.119 11 C -0.080 4.080 12 C 0.056 3.944 13 N -0.387 5.387 14 C 0.399 3.601 15 O -0.520 6.520 16 N -0.389 5.389 17 C 0.037 3.963 18 C -0.015 4.015 19 C -0.584 4.584 20 H 0.078 0.922 21 C -0.191 4.191 22 N -0.566 5.566 23 Si 0.789 3.211 24 H -0.198 1.198 25 H -0.206 1.206 26 H -0.190 1.190 27 C -0.123 4.123 28 C -0.098 4.098 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.183 0.817 40 H 0.169 0.831 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.245 0.755 44 H 0.241 0.759 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.026 0.974 48 H 0.027 0.973 49 H 0.074 0.926 50 H 0.158 0.842 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.684 -4.212 -35.260 36.134 hybrid contribution -0.258 0.982 0.898 1.355 sum 6.426 -3.231 -34.361 35.106 Atomic orbital electron populations 1.22376 0.94415 1.03469 1.03386 1.22142 0.95513 0.80732 1.05095 1.48099 1.62574 1.15156 1.07461 1.21573 0.99178 0.96399 0.84368 1.22073 0.96559 1.02775 1.00620 1.18746 0.76942 0.85483 0.84622 1.90763 1.47265 1.20803 1.87250 1.19959 0.98329 1.00803 0.95007 1.22173 0.97478 0.93691 0.98267 1.21307 0.98551 0.99488 0.92595 1.20019 0.95289 0.97452 0.95266 1.20067 0.97740 0.92931 0.83643 1.44992 1.63114 1.21227 1.09340 1.16118 0.78880 0.83872 0.81183 1.90868 1.58622 1.21651 1.80854 1.45233 1.61326 1.20343 1.11965 1.21069 0.98690 0.96934 0.79656 1.19142 0.94708 0.93822 0.93843 1.21474 1.37406 1.02390 0.97175 0.92209 1.25865 0.95007 0.95071 1.03202 1.70059 1.39376 1.10969 1.36228 0.85448 0.77740 0.78857 0.79015 1.19846 1.20573 1.18973 1.21178 0.98514 0.95720 0.96865 1.21224 0.98204 0.97632 0.92690 0.90847 0.89097 0.92492 0.88405 0.89004 0.87422 0.91857 0.94837 0.91367 0.90056 0.81718 0.83109 0.90393 0.91123 0.75540 0.75860 0.93676 0.93817 0.97405 0.97265 0.92607 0.84243 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.59 8.59 71.98 0.62 0.03 16 2 C 0.09 0.52 5.57 86.38 0.48 1.00 16 3 N -0.60 -7.63 2.48 -825.22 -2.04 -9.67 16 4 C 0.11 1.14 6.09 86.38 0.53 1.67 16 5 C -0.16 -1.61 10.24 71.98 0.74 -0.87 16 6 C 0.55 11.02 7.35 86.79 0.64 11.66 16 7 O -0.58 -16.45 16.49 -3.86 -0.06 -16.52 16 8 C -0.14 -2.35 5.15 -20.09 -0.10 -2.45 16 9 C -0.10 -1.19 7.45 22.53 0.17 -1.02 16 10 C -0.10 -1.23 9.68 22.23 0.22 -1.02 16 11 C -0.08 -1.20 5.25 -19.81 -0.10 -1.30 16 12 C 0.18 3.46 5.79 85.63 0.50 3.95 16 13 N -0.73 -16.87 5.55 -482.29 -2.68 -19.55 16 14 C 0.70 23.53 8.57 179.05 1.53 25.06 16 15 O -0.64 -26.80 16.34 -3.99 -0.07 -26.87 16 16 N -0.73 -25.57 5.56 -478.52 -2.66 -28.23 16 17 C 0.16 6.97 5.61 86.38 0.48 7.46 16 18 C 0.02 1.13 5.09 29.85 0.15 1.28 16 19 C -0.55 -30.55 9.11 25.60 0.23 -30.32 16 20 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 21 C 0.01 0.41 5.46 84.66 0.46 0.87 16 22 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 23 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 C -0.10 -1.64 9.68 22.23 0.22 -1.43 16 28 C -0.08 -1.39 9.62 22.53 0.22 -1.18 16 29 H 0.07 0.14 8.14 -2.38 -0.02 0.12 16 30 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.06 0.35 6.73 -2.39 -0.02 0.33 16 32 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 33 H 0.09 0.61 5.20 -2.39 -0.01 0.60 16 34 H 0.11 0.51 8.07 -2.39 -0.02 0.49 16 35 H 0.06 0.96 7.47 -2.39 -0.02 0.94 16 36 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.17 1.31 3.25 -2.91 -0.01 1.30 16 40 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 42 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 43 H 0.41 7.57 8.48 -92.71 -0.79 6.78 16 44 H 0.41 12.08 8.49 -92.71 -0.79 11.30 16 45 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 46 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 50 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 51 H 0.13 2.32 8.04 -2.91 -0.02 2.30 16 Total: -1.00 -76.82 420.34 1.15 -75.68 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.62 Total: 20.25 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.97 Total: 13.38 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -7.10 Total: -111.58 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.13 Total: -43.39 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -76.82 1.15 -75.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343424633.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.446 kcal (2) G-P(sol) polarization free energy of solvation -76.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds