Wall clock time and date at job start Wed Apr 1 2020 04:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47398 * 2 1 4 4 C 1.46493 * 120.00409 * 95.80191 * 3 2 1 5 5 C 1.50697 * 109.47368 * 270.00344 * 4 3 2 6 6 C 1.38301 * 119.96606 * 269.97642 * 5 4 3 7 7 C 1.38267 * 120.14437 * 180.02562 * 6 5 4 8 8 C 1.38137 * 120.06476 * 359.72325 * 7 6 5 9 9 C 1.38851 * 119.93015 * 0.57138 * 8 7 6 10 10 N 1.39924 * 120.07108 * 179.69949 * 9 8 7 11 11 C 1.34780 * 120.00019 * 324.61068 * 10 9 8 12 12 O 1.21292 * 119.99731 * 354.98506 * 11 10 9 13 13 C 1.50700 * 120.00163 * 175.26513 * 11 10 9 14 14 H 1.09000 * 109.46997 * 39.72138 * 13 11 10 15 15 N 1.46899 * 109.47101 * 159.72001 * 13 11 10 16 16 C 1.53001 * 109.46563 * 279.72286 * 13 11 10 17 17 C 1.53004 * 109.46509 * 174.99853 * 16 13 11 18 18 C 1.50708 * 109.46771 * 179.97438 * 17 16 13 19 19 H 1.07992 * 119.99676 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99904 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99932 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 120.00090 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47092 * 59.99815 * 22 20 18 24 24 H 1.48500 * 109.47531 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47255 * 300.00099 * 22 20 18 26 26 C 1.38090 * 119.96572 * 90.00091 * 5 4 3 27 27 C 1.34780 * 119.99594 * 275.81117 * 3 2 1 28 28 C 1.50703 * 120.00248 * 5.44069 * 27 3 2 29 29 O 1.21280 * 120.00027 * 185.44766 * 27 3 2 30 30 H 1.09007 * 109.46958 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47464 * 300.00141 * 1 2 3 32 32 H 1.08995 * 109.46930 * 60.00462 * 1 2 3 33 33 H 1.08998 * 109.47532 * 239.99320 * 2 1 3 34 34 H 1.09009 * 109.46966 * 119.99460 * 2 1 3 35 35 H 1.09005 * 109.47103 * 150.00099 * 4 3 2 36 36 H 1.08996 * 109.47087 * 30.00827 * 4 3 2 37 37 H 1.07998 * 119.92849 * 359.97438 * 6 5 4 38 38 H 1.07998 * 119.96417 * 180.02562 * 7 6 5 39 39 H 1.07998 * 120.03280 * 180.27828 * 8 7 6 40 40 H 0.97001 * 120.00316 * 144.60408 * 10 9 8 41 41 H 1.00898 * 111.00232 * 296.04331 * 15 13 11 42 42 H 1.00906 * 110.99646 * 60.00352 * 15 13 11 43 43 H 1.08999 * 109.47348 * 294.99547 * 16 13 11 44 44 H 1.08996 * 109.47421 * 55.00023 * 16 13 11 45 45 H 1.08997 * 109.47572 * 299.99793 * 17 16 13 46 46 H 1.09000 * 109.47524 * 60.00297 * 17 16 13 47 47 H 0.97001 * 120.00223 * 179.97438 * 21 20 18 48 48 H 1.08006 * 120.03549 * 0.02562 * 26 5 4 49 49 H 1.09006 * 109.46807 * 91.50553 * 28 27 3 50 50 H 1.08990 * 109.47376 * 211.50690 * 28 27 3 51 51 H 1.09005 * 109.47081 * 331.51125 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3835 2.0291 1.2621 5 6 1.1761 2.7224 1.8386 6 6 0.9116 4.0388 1.5072 7 6 -0.1949 4.6787 2.0344 8 6 -1.0431 4.0026 2.8898 9 6 -0.7770 2.6828 3.2293 10 7 -1.6307 1.9972 4.1005 11 6 -2.2201 2.6518 5.1206 12 8 -1.9409 3.8119 5.3386 13 6 -3.2213 1.9407 5.9940 14 1 -2.8824 0.9215 6.1796 15 7 -3.3503 2.6541 7.2717 16 6 -4.5791 1.9065 5.2895 17 6 -5.5627 1.0778 6.1182 18 6 -6.9003 1.0446 5.4247 19 1 -7.0351 1.5623 4.4866 20 6 -7.9519 0.3532 5.9879 21 7 -7.7878 -0.2768 7.1306 22 14 -9.6095 0.3114 5.1279 23 1 -9.4550 -0.3025 3.7846 24 1 -10.5647 -0.4918 5.9328 25 1 -10.1270 1.6957 4.9829 26 6 0.3351 2.0428 2.6976 27 6 2.1316 2.0558 -1.1613 28 6 1.6417 1.4352 -2.4442 29 8 2.6278 3.1624 -1.1738 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.1706 2.7610 1.0804 36 1 2.7416 1.2777 1.9659 37 1 1.5712 4.5684 0.8358 38 1 -0.3989 5.7066 1.7733 39 1 -1.9097 4.5016 3.2978 40 1 -1.7984 1.0507 3.9703 41 1 -2.4825 2.6347 7.7859 42 1 -3.6635 3.6022 7.1264 43 1 -4.9592 2.9226 5.1836 44 1 -4.4655 1.4564 4.3034 45 1 -5.1827 0.0618 6.2242 46 1 -5.6764 1.5280 7.1044 47 1 -8.5277 -0.7630 7.5270 48 1 0.5426 1.0150 2.9567 49 1 0.6048 1.7247 -2.6151 50 1 2.2573 1.7822 -3.2740 51 1 1.7085 0.3496 -2.3714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424089914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:31 Heat of formation + Delta-G solvation = -55.910052 kcal Electronic energy + Delta-G solvation = -30312.351658 eV Core-core repulsion = 26211.080436 eV Total energy + Delta-G solvation = -4101.271222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81588 -40.23395 -38.71351 -36.44717 -35.39410 -34.87812 -32.87457 -32.61540 -30.77281 -30.23353 -30.10731 -29.61838 -26.48337 -26.10926 -24.11369 -23.81690 -22.56124 -21.93224 -20.53460 -19.86289 -19.42892 -17.81630 -17.46383 -17.15550 -16.44296 -16.35979 -16.17945 -15.85731 -15.54622 -15.21332 -14.70946 -14.39959 -14.30327 -14.26820 -14.03948 -13.94617 -13.70474 -13.54062 -13.12769 -12.99685 -12.81079 -12.50428 -12.38117 -12.33066 -12.11779 -12.01899 -11.81612 -11.63187 -11.47953 -11.33925 -10.91429 -10.74499 -10.63788 -10.42924 -10.22984 -10.12980 -9.85751 -9.43846 -9.17936 -9.06576 -8.92212 -8.44635 -8.28118 -8.19421 -5.97849 -4.00340 1.13121 1.17972 2.28497 2.56406 2.74083 3.04612 3.33146 3.38036 3.40328 3.72797 4.17255 4.43480 4.46179 4.51256 4.61909 4.69030 4.71263 4.81118 4.88899 4.95793 4.99165 5.08340 5.10524 5.24058 5.25829 5.32369 5.37055 5.39072 5.40374 5.45542 5.48884 5.56731 5.71076 5.81123 5.86775 6.08426 6.19008 6.27381 6.34067 6.42523 6.45848 6.56154 6.92276 6.99293 7.00405 7.23010 7.42720 7.69130 7.71194 7.81594 7.90311 8.07481 8.10815 8.43284 9.07222 9.63010 11.12946 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.002186 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.098708 B =12806.366523 C =13981.703044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 N -0.609 5.609 4 C 0.156 3.844 5 C -0.092 4.092 6 C -0.116 4.116 7 C -0.103 4.103 8 C -0.114 4.114 9 C 0.150 3.850 10 N -0.675 5.675 11 C 0.483 3.517 12 O -0.533 6.533 13 C 0.081 3.919 14 H 0.100 0.900 15 N -0.805 5.805 16 C -0.096 4.096 17 C 0.032 3.968 18 C -0.524 4.524 19 H 0.051 0.949 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.134 4.134 27 C 0.515 3.485 28 C -0.177 4.177 29 O -0.544 6.544 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.412 0.588 41 H 0.335 0.665 42 H 0.349 0.651 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.013 0.987 46 H 0.036 0.964 47 H 0.260 0.740 48 H 0.123 0.877 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.684 -0.434 -15.038 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.018 4.018 3 N -0.343 5.343 4 C 0.033 3.967 5 C -0.093 4.093 6 C -0.136 4.136 7 C -0.122 4.122 8 C -0.134 4.134 9 C 0.055 3.945 10 N -0.321 5.321 11 C 0.270 3.730 12 O -0.408 6.408 13 C -0.035 4.035 14 H 0.118 0.882 15 N -0.333 5.333 16 C -0.134 4.134 17 C -0.005 4.005 18 C -0.563 4.563 19 H 0.070 0.930 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.718 3.282 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.155 4.155 27 C 0.304 3.696 28 C -0.236 4.236 29 O -0.421 6.421 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.248 0.752 41 H 0.147 0.853 42 H 0.163 0.837 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.032 0.968 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.141 0.859 49 H 0.113 0.887 50 H 0.109 0.891 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.434 0.300 -14.502 26.715 hybrid contribution -0.469 0.008 -0.864 0.983 sum 21.966 0.308 -15.366 26.808 Atomic orbital electron populations 1.22337 0.95373 1.02663 1.03410 1.21662 0.94978 0.81883 1.03259 1.48098 1.65726 1.14152 1.06279 1.20349 0.94450 0.97400 0.84452 1.19871 0.97241 0.94426 0.97803 1.21106 0.98008 0.94406 1.00035 1.21053 0.94572 0.99877 0.96666 1.21195 1.00659 0.94036 0.97547 1.17772 0.91031 0.93029 0.92625 1.43840 1.45947 1.13779 1.28517 1.23087 0.81242 0.88089 0.80578 1.90675 1.62277 1.17311 1.70539 1.21883 0.95028 0.97893 0.88702 0.88180 1.58988 1.35070 1.22438 1.16830 1.21685 0.91367 1.01925 0.98426 1.19011 0.91613 0.94068 0.95807 1.21225 0.96042 1.31943 1.07047 0.93040 1.24987 0.98746 0.95591 0.94962 1.69959 1.31943 1.33556 1.17673 0.86704 0.83977 0.78058 0.79505 1.20355 1.21307 1.20304 1.20706 0.93794 1.00232 1.00773 1.20793 0.77852 0.85545 0.85432 1.22026 1.03846 1.02372 0.95392 1.90703 1.44172 1.20332 1.86878 0.91282 0.91466 0.92303 0.90215 0.89989 0.88801 0.89689 0.85680 0.85811 0.85025 0.75162 0.85294 0.83684 0.92728 0.92748 0.96845 0.94609 0.92997 0.85932 0.88725 0.89110 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 10.13 37.16 0.38 -0.61 16 2 C 0.10 0.48 5.86 -4.04 -0.02 0.46 16 3 N -0.61 -4.46 2.47 -175.06 -0.43 -4.89 16 4 C 0.16 1.24 5.61 -5.20 -0.03 1.21 16 5 C -0.09 -0.91 5.44 -104.65 -0.57 -1.48 16 6 C -0.12 -1.32 9.70 -39.55 -0.38 -1.70 16 7 C -0.10 -1.24 10.04 -39.61 -0.40 -1.64 16 8 C -0.11 -1.56 8.65 -39.39 -0.34 -1.90 16 9 C 0.15 1.87 6.24 -83.69 -0.52 1.35 16 10 N -0.68 -8.23 5.34 -9.86 -0.05 -8.28 16 11 C 0.48 7.20 6.80 -10.98 -0.07 7.12 16 12 O -0.53 -9.30 14.07 5.55 0.08 -9.23 16 13 C 0.08 1.27 3.15 -68.86 -0.22 1.06 16 14 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 15 N -0.81 -12.93 8.44 -5.65 -0.05 -12.97 16 16 C -0.10 -1.84 4.78 -26.73 -0.13 -1.97 16 17 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 18 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 19 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 22 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C -0.13 -1.34 7.80 -39.39 -0.31 -1.65 16 27 C 0.51 4.67 7.73 -10.98 -0.08 4.59 16 28 C -0.18 -0.98 9.07 36.01 0.33 -0.65 16 29 O -0.54 -7.07 16.44 5.56 0.09 -6.98 16 30 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.07 0.48 6.15 -51.93 -0.32 0.16 16 32 H 0.06 0.35 7.21 -51.93 -0.37 -0.02 16 33 H 0.08 0.23 6.20 -51.93 -0.32 -0.09 16 34 H 0.08 0.28 7.83 -51.92 -0.41 -0.13 16 35 H 0.09 0.86 7.30 -51.93 -0.38 0.48 16 36 H 0.08 0.50 7.80 -51.93 -0.40 0.09 16 37 H 0.13 1.43 7.85 -52.49 -0.41 1.02 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.13 2.03 6.56 -52.49 -0.34 1.69 16 40 H 0.41 3.96 8.82 -40.82 -0.36 3.60 16 41 H 0.34 4.65 9.06 -39.29 -0.36 4.30 16 42 H 0.35 5.70 8.58 -39.29 -0.34 5.36 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.12 0.94 8.03 -52.48 -0.42 0.52 16 49 H 0.09 0.49 7.96 -51.93 -0.41 0.08 16 50 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.08 0.27 5.87 -51.93 -0.30 -0.03 16 LS Contribution 417.27 15.07 6.29 6.29 Total: -1.00 -34.77 417.27 -9.34 -44.11 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -8.06 Total: 9.73 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.92 Total: -8.45 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.20 Total: -51.90 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.17 Total: -16.20 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.77 -9.34 -44.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424089914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.800 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds