Wall clock time and date at job start Wed Apr 1 2020 04:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47398 * 2 1 4 4 C 1.46493 * 120.00409 * 95.80191 * 3 2 1 5 5 C 1.50697 * 109.47368 * 270.00344 * 4 3 2 6 6 C 1.38301 * 119.96606 * 269.97642 * 5 4 3 7 7 C 1.38267 * 120.14437 * 180.02562 * 6 5 4 8 8 C 1.38137 * 120.06476 * 359.72325 * 7 6 5 9 9 C 1.38851 * 119.93015 * 0.57138 * 8 7 6 10 10 N 1.39924 * 120.07108 * 179.69949 * 9 8 7 11 11 C 1.34780 * 120.00019 * 324.61068 * 10 9 8 12 12 O 1.21292 * 119.99731 * 354.98506 * 11 10 9 13 13 C 1.50700 * 120.00163 * 175.26513 * 11 10 9 14 14 H 1.09000 * 109.46997 * 39.72138 * 13 11 10 15 15 N 1.46899 * 109.47101 * 159.72001 * 13 11 10 16 16 C 1.53001 * 109.46563 * 279.72286 * 13 11 10 17 17 C 1.53004 * 109.46509 * 174.99853 * 16 13 11 18 18 C 1.50708 * 109.46771 * 179.97438 * 17 16 13 19 19 H 1.07992 * 119.99676 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99904 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99932 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 120.00090 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47092 * 59.99815 * 22 20 18 24 24 H 1.48500 * 109.47531 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47255 * 300.00099 * 22 20 18 26 26 C 1.38090 * 119.96572 * 90.00091 * 5 4 3 27 27 C 1.34780 * 119.99594 * 275.81117 * 3 2 1 28 28 C 1.50703 * 120.00248 * 5.44069 * 27 3 2 29 29 O 1.21280 * 120.00027 * 185.44766 * 27 3 2 30 30 H 1.09007 * 109.46958 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47464 * 300.00141 * 1 2 3 32 32 H 1.08995 * 109.46930 * 60.00462 * 1 2 3 33 33 H 1.08998 * 109.47532 * 239.99320 * 2 1 3 34 34 H 1.09009 * 109.46966 * 119.99460 * 2 1 3 35 35 H 1.09005 * 109.47103 * 150.00099 * 4 3 2 36 36 H 1.08996 * 109.47087 * 30.00827 * 4 3 2 37 37 H 1.07998 * 119.92849 * 359.97438 * 6 5 4 38 38 H 1.07998 * 119.96417 * 180.02562 * 7 6 5 39 39 H 1.07998 * 120.03280 * 180.27828 * 8 7 6 40 40 H 0.97001 * 120.00316 * 144.60408 * 10 9 8 41 41 H 1.00898 * 111.00232 * 296.04331 * 15 13 11 42 42 H 1.00906 * 110.99646 * 60.00352 * 15 13 11 43 43 H 1.08999 * 109.47348 * 294.99547 * 16 13 11 44 44 H 1.08996 * 109.47421 * 55.00023 * 16 13 11 45 45 H 1.08997 * 109.47572 * 299.99793 * 17 16 13 46 46 H 1.09000 * 109.47524 * 60.00297 * 17 16 13 47 47 H 0.97001 * 120.00223 * 179.97438 * 21 20 18 48 48 H 1.08006 * 120.03549 * 0.02562 * 26 5 4 49 49 H 1.09006 * 109.46807 * 91.50553 * 28 27 3 50 50 H 1.08990 * 109.47376 * 211.50690 * 28 27 3 51 51 H 1.09005 * 109.47081 * 331.51125 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3835 2.0291 1.2621 5 6 1.1761 2.7224 1.8386 6 6 0.9116 4.0388 1.5072 7 6 -0.1949 4.6787 2.0344 8 6 -1.0431 4.0026 2.8898 9 6 -0.7770 2.6828 3.2293 10 7 -1.6307 1.9972 4.1005 11 6 -2.2201 2.6518 5.1206 12 8 -1.9409 3.8119 5.3386 13 6 -3.2213 1.9407 5.9940 14 1 -2.8824 0.9215 6.1796 15 7 -3.3503 2.6541 7.2717 16 6 -4.5791 1.9065 5.2895 17 6 -5.5627 1.0778 6.1182 18 6 -6.9003 1.0446 5.4247 19 1 -7.0351 1.5623 4.4866 20 6 -7.9519 0.3532 5.9879 21 7 -7.7878 -0.2768 7.1306 22 14 -9.6095 0.3114 5.1279 23 1 -9.4550 -0.3025 3.7846 24 1 -10.5647 -0.4918 5.9328 25 1 -10.1270 1.6957 4.9829 26 6 0.3351 2.0428 2.6976 27 6 2.1316 2.0558 -1.1613 28 6 1.6417 1.4352 -2.4442 29 8 2.6278 3.1624 -1.1738 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.1706 2.7610 1.0804 36 1 2.7416 1.2777 1.9659 37 1 1.5712 4.5684 0.8358 38 1 -0.3989 5.7066 1.7733 39 1 -1.9097 4.5016 3.2978 40 1 -1.7984 1.0507 3.9703 41 1 -2.4825 2.6347 7.7859 42 1 -3.6635 3.6022 7.1264 43 1 -4.9592 2.9226 5.1836 44 1 -4.4655 1.4564 4.3034 45 1 -5.1827 0.0618 6.2242 46 1 -5.6764 1.5280 7.1044 47 1 -8.5277 -0.7630 7.5270 48 1 0.5426 1.0150 2.9567 49 1 0.6048 1.7247 -2.6151 50 1 2.2573 1.7822 -3.2740 51 1 1.7085 0.3496 -2.3714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424089914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:30 Heat of formation + Delta-G solvation = -79.422484 kcal Electronic energy + Delta-G solvation = -30313.371233 eV Core-core repulsion = 26211.080436 eV Total energy + Delta-G solvation = -4102.290797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81623 -41.02278 -39.68744 -37.18412 -36.81172 -35.94080 -34.83030 -33.35249 -31.95261 -31.44114 -30.79587 -30.43642 -28.11799 -26.80706 -25.72862 -24.26970 -23.47588 -23.20603 -22.00233 -21.03471 -20.06799 -18.95695 -18.38281 -18.11822 -18.02306 -17.27277 -17.07415 -16.98415 -16.51688 -16.38758 -16.25122 -15.71606 -15.42643 -15.06083 -14.86420 -14.78478 -14.54464 -14.41112 -14.27448 -13.87576 -13.81521 -13.63558 -13.44400 -13.34706 -13.10049 -12.95822 -12.80035 -12.77684 -12.51802 -12.46707 -12.29069 -12.19535 -11.83428 -11.76828 -11.68166 -11.39122 -11.25481 -11.01135 -10.88260 -10.48235 -9.89229 -9.75468 -9.63372 -9.17617 -8.13667 -6.23623 0.18221 0.28761 1.41392 1.43753 1.44522 1.52183 1.63435 1.98736 2.12375 2.44672 2.83253 3.19492 3.48166 3.66703 3.71428 3.74826 3.91050 4.06979 4.10988 4.14219 4.23408 4.27595 4.32568 4.36194 4.44933 4.48725 4.59208 4.65032 4.72051 4.74974 4.75996 4.88553 4.90214 4.96003 4.98428 5.13644 5.23441 5.25965 5.31798 5.46475 5.47697 5.53876 5.57265 5.59648 5.84677 5.97176 5.98919 6.06134 6.30440 6.33191 6.42623 6.49125 6.94839 7.00436 7.18535 7.44374 8.97163 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.002186 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.098708 B =12806.366523 C =13981.703044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.155 3.845 5 C -0.085 4.085 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.137 4.137 9 C 0.135 3.865 10 N -0.660 5.660 11 C 0.490 3.510 12 O -0.560 6.560 13 C 0.090 3.910 14 H 0.119 0.881 15 N -0.818 5.818 16 C -0.082 4.082 17 C 0.040 3.960 18 C -0.544 4.544 19 H 0.054 0.946 20 C 0.003 3.997 21 N -0.928 5.928 22 Si 0.957 3.043 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.118 4.118 27 C 0.504 3.496 28 C -0.172 4.172 29 O -0.593 6.593 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.426 0.574 41 H 0.348 0.652 42 H 0.346 0.654 43 H 0.041 0.959 44 H 0.068 0.932 45 H -0.002 1.002 46 H 0.006 0.994 47 H 0.262 0.738 48 H 0.155 0.845 49 H 0.098 0.902 50 H 0.090 0.910 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.541 -2.599 -16.536 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.020 4.020 3 N -0.336 5.336 4 C 0.032 3.968 5 C -0.086 4.086 6 C -0.142 4.142 7 C -0.129 4.129 8 C -0.157 4.157 9 C 0.041 3.959 10 N -0.306 5.306 11 C 0.277 3.723 12 O -0.438 6.438 13 C -0.025 4.025 14 H 0.136 0.864 15 N -0.347 5.347 16 C -0.121 4.121 17 C 0.003 3.997 18 C -0.583 4.583 19 H 0.072 0.928 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.782 3.218 23 H -0.190 1.190 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.139 4.139 27 C 0.295 3.705 28 C -0.231 4.231 29 O -0.474 6.474 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.149 0.851 39 H 0.126 0.874 40 H 0.265 0.735 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.016 0.984 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.173 0.827 49 H 0.116 0.884 50 H 0.109 0.891 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 23.302 -1.919 -16.021 28.344 hybrid contribution -0.686 0.667 -0.417 1.044 sum 22.616 -1.253 -16.438 27.987 Atomic orbital electron populations 1.22327 0.95987 1.03224 1.02180 1.21924 0.94344 0.80320 1.05453 1.48193 1.64872 1.15095 1.05486 1.20389 0.92992 0.97994 0.85393 1.20126 0.97654 0.93839 0.97029 1.21183 0.97649 0.95326 1.00006 1.21145 0.94723 1.00391 0.96637 1.21117 1.00660 0.95057 0.98889 1.17913 0.92027 0.92832 0.93170 1.43619 1.45227 1.14332 1.27439 1.22715 0.81232 0.87486 0.80915 1.90676 1.63319 1.18429 1.71345 1.21665 0.93390 0.99005 0.88489 0.86377 1.58976 1.36106 1.22269 1.17302 1.21403 0.92099 1.00045 0.98509 1.18820 0.92140 0.93739 0.95009 1.21695 0.97537 1.31688 1.07336 0.92757 1.25867 1.02745 0.95232 0.95648 1.70087 1.33159 1.34428 1.19167 0.85629 0.79178 0.78221 0.78768 1.19022 1.20944 1.19825 1.20925 0.92236 1.01351 0.99345 1.21466 0.77118 0.85068 0.86867 1.22040 1.03725 1.03858 0.93458 1.90681 1.46488 1.22542 1.87679 0.89816 0.93173 0.93078 0.87967 0.87971 0.90249 0.86629 0.86177 0.85150 0.87433 0.73472 0.83856 0.84077 0.94036 0.91331 0.98396 0.97557 0.92917 0.82725 0.88354 0.89086 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 10.13 71.98 0.73 -0.66 16 2 C 0.10 0.53 5.86 86.38 0.51 1.04 16 3 N -0.60 -7.37 2.47 -826.17 -2.04 -9.41 16 4 C 0.15 2.13 5.61 85.63 0.48 2.61 16 5 C -0.08 -1.55 5.44 -19.89 -0.11 -1.65 16 6 C -0.12 -2.77 9.70 22.29 0.22 -2.55 16 7 C -0.11 -2.73 10.04 22.25 0.22 -2.51 16 8 C -0.14 -3.80 8.65 22.39 0.19 -3.61 16 9 C 0.13 3.20 6.24 38.15 0.24 3.43 16 10 N -0.66 -15.04 5.34 -303.50 -1.62 -16.65 16 11 C 0.49 14.24 6.80 87.66 0.60 14.84 16 12 O -0.56 -19.68 14.07 -3.07 -0.04 -19.73 16 13 C 0.09 2.78 3.15 44.17 0.14 2.92 16 14 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 15 N -0.82 -26.27 8.44 -171.80 -1.45 -27.72 16 16 C -0.08 -3.16 4.78 30.60 0.15 -3.01 16 17 C 0.04 2.02 4.86 29.85 0.15 2.16 16 18 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 19 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 20 C 0.00 0.18 5.46 84.66 0.46 0.64 16 21 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 22 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 C -0.12 -2.07 7.80 22.39 0.17 -1.89 16 27 C 0.50 8.49 7.73 87.66 0.68 9.17 16 28 C -0.17 -1.55 9.07 71.24 0.65 -0.91 16 29 O -0.59 -15.49 16.44 -3.03 -0.05 -15.54 16 30 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.05 0.57 6.15 -2.39 -0.01 0.56 16 32 H 0.05 0.48 7.21 -2.39 -0.02 0.46 16 33 H 0.10 0.12 6.20 -2.39 -0.01 0.11 16 34 H 0.10 0.19 7.83 -2.38 -0.02 0.17 16 35 H 0.08 1.37 7.30 -2.38 -0.02 1.36 16 36 H 0.12 0.89 7.80 -2.39 -0.02 0.87 16 37 H 0.12 2.84 7.85 -2.91 -0.02 2.81 16 38 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.11 3.49 6.56 -2.91 -0.02 3.47 16 40 H 0.43 7.10 8.82 -92.71 -0.82 6.28 16 41 H 0.35 9.51 9.06 -89.70 -0.81 8.70 16 42 H 0.35 11.50 8.58 -89.69 -0.77 10.73 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 46 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 47 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.16 1.70 8.03 -2.91 -0.02 1.68 16 49 H 0.10 0.85 7.96 -2.38 -0.02 0.83 16 50 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.11 0.34 5.87 -2.38 -0.01 0.32 16 Total: -1.00 -77.55 417.27 1.38 -76.17 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -1.43 Total: 32.47 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 5.70 Total: -10.04 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -4.82 Total: -109.14 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.09 Total: -35.27 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -77.55 1.38 -76.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424089914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.252 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds