Wall clock time and date at job start Wed Apr 1 2020 04:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47509 * 2 1 4 4 C 1.46496 * 120.00284 * 270.00264 * 3 2 1 5 5 C 1.50697 * 109.47035 * 269.99472 * 4 3 2 6 6 C 1.38297 * 119.96749 * 269.72047 * 5 4 3 7 7 C 1.38264 * 120.14278 * 179.76605 * 6 5 4 8 8 C 1.38132 * 120.06728 * 0.51326 * 7 6 5 9 9 C 1.38847 * 119.92864 * 359.74668 * 8 7 6 10 10 N 1.39928 * 120.06796 * 179.97438 * 9 8 7 11 11 C 1.34775 * 120.00374 * 324.93329 * 10 9 8 12 12 O 1.21289 * 119.99490 * 4.62149 * 11 10 9 13 13 C 1.50691 * 120.00488 * 184.62694 * 11 10 9 14 14 H 1.09008 * 109.46855 * 319.99943 * 13 11 10 15 15 N 1.46902 * 109.47447 * 200.00308 * 13 11 10 16 16 C 1.53002 * 109.47449 * 79.99674 * 13 11 10 17 17 C 1.52997 * 109.47187 * 185.00313 * 16 13 11 18 18 C 1.50699 * 109.47328 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99697 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00397 * 180.02562 * 18 17 16 21 21 N 1.31522 * 120.00036 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00343 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46938 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47188 * 119.99700 * 22 20 18 25 25 H 1.48494 * 109.47555 * 239.99860 * 22 20 18 26 26 C 1.38092 * 119.96116 * 90.00365 * 5 4 3 27 27 C 1.34778 * 119.99628 * 89.99890 * 3 2 1 28 28 C 1.50707 * 119.99853 * 0.02562 * 27 3 2 29 29 O 1.21281 * 120.00236 * 179.72611 * 27 3 2 30 30 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47212 * 299.99974 * 1 2 3 32 32 H 1.09009 * 109.47148 * 59.99553 * 1 2 3 33 33 H 1.09011 * 109.47209 * 240.00497 * 2 1 3 34 34 H 1.09000 * 109.47406 * 120.00457 * 2 1 3 35 35 H 1.09001 * 109.47017 * 30.00016 * 4 3 2 36 36 H 1.09002 * 109.47155 * 149.99672 * 4 3 2 37 37 H 1.08006 * 119.93059 * 0.02562 * 6 5 4 38 38 H 1.08004 * 119.96350 * 180.23627 * 7 6 5 39 39 H 1.08004 * 120.03224 * 179.72231 * 8 7 6 40 40 H 0.97003 * 119.99860 * 144.93474 * 10 9 8 41 41 H 1.00902 * 110.99580 * 299.99804 * 15 13 11 42 42 H 1.00890 * 111.00383 * 63.94655 * 15 13 11 43 43 H 1.08997 * 109.47233 * 305.00070 * 16 13 11 44 44 H 1.09000 * 109.47019 * 65.00610 * 16 13 11 45 45 H 1.09004 * 109.47409 * 300.00235 * 17 16 13 46 46 H 1.09006 * 109.47510 * 59.99920 * 17 16 13 47 47 H 0.97003 * 119.99809 * 180.02562 * 21 20 18 48 48 H 1.08000 * 120.03592 * 359.95572 * 26 5 4 49 49 H 1.09005 * 109.46658 * 179.72610 * 28 27 3 50 50 H 1.09003 * 109.46622 * 299.71990 * 28 27 3 51 51 H 1.08993 * 109.47215 * 59.72545 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 6 4.6832 2.7080 -1.3087 7 6 5.9910 2.4915 -1.7017 8 6 6.3036 1.4079 -2.4993 9 6 5.3037 0.5327 -2.9019 10 7 5.6171 -0.5657 -3.7102 11 6 6.5810 -0.4603 -4.6463 12 8 7.2340 0.5581 -4.7324 13 6 6.8474 -1.6078 -5.5861 14 1 6.7824 -2.5483 -5.0388 15 7 8.1919 -1.4679 -6.1612 16 6 5.8086 -1.5988 -6.7095 17 6 6.0017 -2.8332 -7.5925 18 6 4.9791 -2.8240 -8.6994 19 1 4.2627 -2.0184 -8.7660 20 6 4.9572 -3.8443 -9.6263 21 7 5.8291 -4.8256 -9.5449 22 14 3.6890 -3.8333 -10.9979 23 1 2.8295 -2.6294 -10.8676 24 1 4.3810 -3.8083 -12.3116 25 1 2.8481 -5.0536 -10.9046 26 6 3.9918 0.7500 -2.5010 27 6 2.2430 2.0165 1.1673 28 6 1.9923 1.3058 2.4723 29 8 2.6521 3.1582 1.1674 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.5817 1.6878 -2.0283 36 1 2.0956 3.1411 -1.1383 37 1 4.4406 3.5583 -0.6885 38 1 6.7682 3.1729 -1.3885 39 1 7.3247 1.2419 -2.8096 40 1 5.1405 -1.4029 -3.5969 41 1 8.2775 -0.6031 -6.6740 42 1 8.9000 -1.5356 -5.4458 43 1 4.8075 -1.6132 -6.2788 44 1 5.9323 -0.6985 -7.3114 45 1 7.0029 -2.8188 -8.0233 46 1 5.8781 -3.7335 -6.9906 47 1 5.8139 -5.5433 -10.1973 48 1 3.2119 0.0708 -2.8123 49 1 2.2329 1.9720 3.3009 50 1 0.9432 1.0157 2.5323 51 1 2.6191 0.4159 2.5277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424089919.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:34 Heat of formation + Delta-G solvation = -58.207466 kcal Electronic energy + Delta-G solvation = -30032.375602 eV Core-core repulsion = 25931.004757 eV Total energy + Delta-G solvation = -4101.370845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.79014 -40.22440 -38.69257 -36.44263 -35.40026 -34.87319 -32.87905 -32.63253 -30.67189 -30.29435 -30.13402 -29.58596 -26.49241 -26.15968 -24.15346 -23.76879 -22.51690 -21.93824 -20.52827 -19.91715 -19.35808 -17.75188 -17.43367 -16.99255 -16.73812 -16.40749 -16.09195 -15.71368 -15.56347 -15.25524 -14.80316 -14.43519 -14.34427 -14.20834 -14.12318 -13.84055 -13.59291 -13.54492 -13.15037 -13.09590 -12.66516 -12.56316 -12.44560 -12.37002 -12.12811 -12.00380 -11.83474 -11.62611 -11.61626 -11.34410 -10.95007 -10.73585 -10.59186 -10.41884 -10.20373 -10.08555 -9.86277 -9.44207 -9.15442 -9.04180 -8.94107 -8.45103 -8.28495 -8.17983 -5.98171 -4.00461 1.15619 1.20575 2.29261 2.55679 2.73189 3.06157 3.30797 3.38727 3.42358 3.74116 4.17522 4.42837 4.46215 4.52351 4.65715 4.70579 4.73106 4.80963 4.85586 4.91418 4.98338 5.02383 5.14710 5.23079 5.25229 5.30908 5.36346 5.37228 5.41205 5.43338 5.47231 5.58313 5.70997 5.71864 5.83966 6.08678 6.21379 6.29586 6.34385 6.43671 6.47817 6.57337 6.94732 7.00693 7.00914 7.23682 7.43049 7.69322 7.71643 7.82298 7.90496 8.07466 8.11127 8.43416 9.07578 9.63055 11.12680 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.002175 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.353809 B =12869.516199 C =14504.551848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 N -0.608 5.608 4 C 0.156 3.844 5 C -0.093 4.093 6 C -0.114 4.114 7 C -0.106 4.106 8 C -0.117 4.117 9 C 0.147 3.853 10 N -0.674 5.674 11 C 0.483 3.517 12 O -0.533 6.533 13 C 0.081 3.919 14 H 0.101 0.899 15 N -0.805 5.805 16 C -0.096 4.096 17 C 0.031 3.969 18 C -0.522 4.522 19 H 0.052 0.948 20 C 0.057 3.943 21 N -0.892 5.892 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.285 1.285 26 C -0.134 4.134 27 C 0.512 3.488 28 C -0.175 4.175 29 O -0.543 6.543 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.137 0.863 40 H 0.413 0.587 41 H 0.349 0.651 42 H 0.335 0.665 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.036 0.964 46 H 0.013 0.987 47 H 0.259 0.741 48 H 0.124 0.876 49 H 0.090 0.910 50 H 0.087 0.913 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.931 9.379 24.767 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.341 5.341 4 C 0.034 3.966 5 C -0.095 4.095 6 C -0.133 4.133 7 C -0.125 4.125 8 C -0.138 4.138 9 C 0.052 3.948 10 N -0.319 5.319 11 C 0.270 3.730 12 O -0.409 6.409 13 C -0.035 4.035 14 H 0.119 0.881 15 N -0.333 5.333 16 C -0.134 4.134 17 C -0.006 4.006 18 C -0.561 4.561 19 H 0.071 0.929 20 C -0.144 4.144 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.155 4.155 27 C 0.301 3.699 28 C -0.234 4.234 29 O -0.420 6.420 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.155 0.845 40 H 0.249 0.751 41 H 0.163 0.837 42 H 0.147 0.853 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.032 0.968 47 H 0.069 0.931 48 H 0.142 0.858 49 H 0.109 0.891 50 H 0.106 0.894 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.340 9.838 24.118 27.062 hybrid contribution -0.909 0.230 -0.193 0.957 sum -8.249 10.068 23.925 27.236 Atomic orbital electron populations 1.22226 0.95577 1.02646 1.02638 1.21632 0.94498 0.82178 1.03780 1.48088 1.65847 1.14499 1.05714 1.20328 0.92254 0.99093 0.84922 1.19874 0.95942 0.95323 0.98342 1.21130 0.92511 0.99698 0.99994 1.21071 0.96550 0.97350 0.97500 1.21321 0.99822 0.95409 0.97200 1.17809 0.92983 0.90412 0.93592 1.43804 1.39310 1.13836 1.34990 1.23082 0.78377 0.91275 0.80231 1.90649 1.47896 1.31447 1.70893 1.21882 0.92942 0.94184 0.94483 0.88135 1.58989 1.01740 1.43562 1.29034 1.21681 0.94158 1.02876 0.94680 1.19023 0.98157 0.90174 0.93232 1.21297 1.15841 1.07535 1.11386 0.92932 1.24996 0.95877 0.95664 0.97829 1.69986 1.35653 1.11352 1.36138 0.86591 0.81593 0.77812 0.82308 1.19860 1.21020 1.21089 1.20782 0.94403 0.98872 1.01417 1.20816 0.76726 0.86618 0.85705 1.21980 1.03909 1.02397 0.95111 1.90705 1.45302 1.18363 1.87597 0.91149 0.92403 0.92069 0.89957 0.90076 0.89575 0.88899 0.85586 0.85884 0.84543 0.75145 0.83655 0.85321 0.92761 0.92717 0.94605 0.96833 0.93121 0.85813 0.89124 0.89429 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.24 37.15 0.38 -0.30 16 2 C 0.10 0.49 5.93 -4.04 -0.02 0.46 16 3 N -0.61 -4.56 2.46 -175.06 -0.43 -4.99 16 4 C 0.16 1.33 5.53 -5.20 -0.03 1.31 16 5 C -0.09 -0.98 5.46 -104.65 -0.57 -1.55 16 6 C -0.11 -1.33 9.70 -39.55 -0.38 -1.71 16 7 C -0.11 -1.28 10.04 -39.61 -0.40 -1.67 16 8 C -0.12 -1.58 8.70 -39.39 -0.34 -1.92 16 9 C 0.15 1.86 6.30 -83.69 -0.53 1.33 16 10 N -0.67 -8.31 5.34 -9.87 -0.05 -8.36 16 11 C 0.48 7.24 6.91 -10.99 -0.08 7.16 16 12 O -0.53 -9.30 13.69 5.55 0.08 -9.23 16 13 C 0.08 1.28 3.15 -68.87 -0.22 1.06 16 14 H 0.10 1.45 8.14 -51.92 -0.42 1.03 16 15 N -0.81 -12.90 8.44 -5.65 -0.05 -12.95 16 16 C -0.10 -1.85 4.78 -26.73 -0.13 -1.98 16 17 C 0.03 0.77 4.86 -27.89 -0.14 0.64 16 18 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 19 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 22 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.13 -1.43 9.62 -39.39 -0.38 -1.81 16 27 C 0.51 4.62 7.78 -10.98 -0.09 4.53 16 28 C -0.17 -0.90 8.88 36.01 0.32 -0.59 16 29 O -0.54 -7.04 16.20 5.56 0.09 -6.95 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.23 7.23 -51.93 -0.38 -0.15 16 32 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 33 H 0.08 0.38 8.07 -51.92 -0.42 -0.04 16 34 H 0.08 0.28 6.43 -51.93 -0.33 -0.05 16 35 H 0.09 0.59 8.01 -51.93 -0.42 0.17 16 36 H 0.09 0.89 7.37 -51.93 -0.38 0.51 16 37 H 0.13 1.48 7.59 -52.48 -0.40 1.08 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.14 2.01 6.22 -52.48 -0.33 1.69 16 40 H 0.41 4.00 8.82 -40.82 -0.36 3.64 16 41 H 0.35 5.71 8.58 -39.29 -0.34 5.38 16 42 H 0.33 4.60 9.06 -39.30 -0.36 4.24 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.04 0.97 7.75 -51.93 -0.40 0.56 16 46 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 49 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 50 H 0.09 0.29 7.20 -51.93 -0.37 -0.08 16 51 H 0.09 0.33 7.39 -51.93 -0.38 -0.05 16 LS Contribution 421.58 15.07 6.35 6.35 Total: -1.00 -34.85 421.58 -9.51 -44.36 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -8.21 Total: 9.39 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -3.01 Total: -8.29 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.21 Total: -52.05 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.17 Total: -16.18 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.85 -9.51 -44.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424089919.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.847 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds