Wall clock time and date at job start Wed Apr 1 2020 04:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47509 * 2 1 4 4 C 1.46496 * 120.00284 * 270.00264 * 3 2 1 5 5 C 1.50697 * 109.47035 * 269.99472 * 4 3 2 6 6 C 1.38297 * 119.96749 * 269.72047 * 5 4 3 7 7 C 1.38264 * 120.14278 * 179.76605 * 6 5 4 8 8 C 1.38132 * 120.06728 * 0.51326 * 7 6 5 9 9 C 1.38847 * 119.92864 * 359.74668 * 8 7 6 10 10 N 1.39928 * 120.06796 * 179.97438 * 9 8 7 11 11 C 1.34775 * 120.00374 * 324.93329 * 10 9 8 12 12 O 1.21289 * 119.99490 * 4.62149 * 11 10 9 13 13 C 1.50691 * 120.00488 * 184.62694 * 11 10 9 14 14 H 1.09008 * 109.46855 * 319.99943 * 13 11 10 15 15 N 1.46902 * 109.47447 * 200.00308 * 13 11 10 16 16 C 1.53002 * 109.47449 * 79.99674 * 13 11 10 17 17 C 1.52997 * 109.47187 * 185.00313 * 16 13 11 18 18 C 1.50699 * 109.47328 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99697 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00397 * 180.02562 * 18 17 16 21 21 N 1.31522 * 120.00036 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00343 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46938 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47188 * 119.99700 * 22 20 18 25 25 H 1.48494 * 109.47555 * 239.99860 * 22 20 18 26 26 C 1.38092 * 119.96116 * 90.00365 * 5 4 3 27 27 C 1.34778 * 119.99628 * 89.99890 * 3 2 1 28 28 C 1.50707 * 119.99853 * 0.02562 * 27 3 2 29 29 O 1.21281 * 120.00236 * 179.72611 * 27 3 2 30 30 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47212 * 299.99974 * 1 2 3 32 32 H 1.09009 * 109.47148 * 59.99553 * 1 2 3 33 33 H 1.09011 * 109.47209 * 240.00497 * 2 1 3 34 34 H 1.09000 * 109.47406 * 120.00457 * 2 1 3 35 35 H 1.09001 * 109.47017 * 30.00016 * 4 3 2 36 36 H 1.09002 * 109.47155 * 149.99672 * 4 3 2 37 37 H 1.08006 * 119.93059 * 0.02562 * 6 5 4 38 38 H 1.08004 * 119.96350 * 180.23627 * 7 6 5 39 39 H 1.08004 * 120.03224 * 179.72231 * 8 7 6 40 40 H 0.97003 * 119.99860 * 144.93474 * 10 9 8 41 41 H 1.00902 * 110.99580 * 299.99804 * 15 13 11 42 42 H 1.00890 * 111.00383 * 63.94655 * 15 13 11 43 43 H 1.08997 * 109.47233 * 305.00070 * 16 13 11 44 44 H 1.09000 * 109.47019 * 65.00610 * 16 13 11 45 45 H 1.09004 * 109.47409 * 300.00235 * 17 16 13 46 46 H 1.09006 * 109.47510 * 59.99920 * 17 16 13 47 47 H 0.97003 * 119.99809 * 180.02562 * 21 20 18 48 48 H 1.08000 * 120.03592 * 359.95572 * 26 5 4 49 49 H 1.09005 * 109.46658 * 179.72610 * 28 27 3 50 50 H 1.09003 * 109.46622 * 299.71990 * 28 27 3 51 51 H 1.08993 * 109.47215 * 59.72545 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 6 4.6832 2.7080 -1.3087 7 6 5.9910 2.4915 -1.7017 8 6 6.3036 1.4079 -2.4993 9 6 5.3037 0.5327 -2.9019 10 7 5.6171 -0.5657 -3.7102 11 6 6.5810 -0.4603 -4.6463 12 8 7.2340 0.5581 -4.7324 13 6 6.8474 -1.6078 -5.5861 14 1 6.7824 -2.5483 -5.0388 15 7 8.1919 -1.4679 -6.1612 16 6 5.8086 -1.5988 -6.7095 17 6 6.0017 -2.8332 -7.5925 18 6 4.9791 -2.8240 -8.6994 19 1 4.2627 -2.0184 -8.7660 20 6 4.9572 -3.8443 -9.6263 21 7 5.8291 -4.8256 -9.5449 22 14 3.6890 -3.8333 -10.9979 23 1 2.8295 -2.6294 -10.8676 24 1 4.3810 -3.8083 -12.3116 25 1 2.8481 -5.0536 -10.9046 26 6 3.9918 0.7500 -2.5010 27 6 2.2430 2.0165 1.1673 28 6 1.9923 1.3058 2.4723 29 8 2.6521 3.1582 1.1674 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.5817 1.6878 -2.0283 36 1 2.0956 3.1411 -1.1383 37 1 4.4406 3.5583 -0.6885 38 1 6.7682 3.1729 -1.3885 39 1 7.3247 1.2419 -2.8096 40 1 5.1405 -1.4029 -3.5969 41 1 8.2775 -0.6031 -6.6740 42 1 8.9000 -1.5356 -5.4458 43 1 4.8075 -1.6132 -6.2788 44 1 5.9323 -0.6985 -7.3114 45 1 7.0029 -2.8188 -8.0233 46 1 5.8781 -3.7335 -6.9906 47 1 5.8139 -5.5433 -10.1973 48 1 3.2119 0.0708 -2.8123 49 1 2.2329 1.9720 3.3009 50 1 0.9432 1.0157 2.5323 51 1 2.6191 0.4159 2.5277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424089919.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:33 Heat of formation + Delta-G solvation = -81.375613 kcal Electronic energy + Delta-G solvation = -30033.380248 eV Core-core repulsion = 25931.004757 eV Total energy + Delta-G solvation = -4102.375491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.81263 -41.00235 -39.67432 -37.17634 -36.81204 -35.93964 -34.82636 -33.37889 -31.94337 -31.26983 -30.94599 -30.37506 -28.11108 -26.87156 -25.73276 -24.26052 -23.40928 -23.22090 -21.97630 -21.11427 -20.01686 -18.93406 -18.31344 -18.12789 -17.89727 -17.33082 -17.18150 -16.95155 -16.54012 -16.35688 -16.24954 -15.82447 -15.31210 -15.11103 -14.87287 -14.73737 -14.62434 -14.31381 -14.25542 -13.91441 -13.76842 -13.57686 -13.43891 -13.31039 -13.07499 -13.04276 -12.82458 -12.78662 -12.52894 -12.47493 -12.26480 -12.21345 -11.89182 -11.76992 -11.62064 -11.38344 -11.20949 -10.98948 -10.88543 -10.48609 -9.89090 -9.77905 -9.63621 -9.17107 -8.13301 -6.23027 0.20510 0.29280 1.40333 1.42077 1.44007 1.55362 1.65167 1.99200 2.11436 2.45138 2.83435 3.20110 3.49133 3.66239 3.72352 3.75340 3.91403 4.07764 4.10152 4.14800 4.24789 4.28315 4.34630 4.39473 4.47294 4.48425 4.55267 4.64407 4.68726 4.75365 4.77405 4.91155 4.91544 4.96905 4.98608 5.12753 5.24438 5.28125 5.32895 5.43032 5.47881 5.53256 5.58674 5.59442 5.85561 5.98601 5.99781 6.06854 6.31199 6.33808 6.43357 6.49747 6.96004 7.00519 7.19113 7.45149 8.97936 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.002175 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.353809 B =12869.516199 C =14504.551848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.604 5.604 4 C 0.157 3.843 5 C -0.088 4.088 6 C -0.121 4.121 7 C -0.111 4.111 8 C -0.136 4.136 9 C 0.131 3.869 10 N -0.659 5.659 11 C 0.489 3.511 12 O -0.559 6.559 13 C 0.090 3.910 14 H 0.118 0.882 15 N -0.818 5.818 16 C -0.082 4.082 17 C 0.039 3.961 18 C -0.541 4.541 19 H 0.055 0.945 20 C 0.001 3.999 21 N -0.929 5.929 22 Si 0.958 3.042 23 H -0.264 1.264 24 H -0.283 1.283 25 H -0.277 1.277 26 C -0.124 4.124 27 C 0.502 3.498 28 C -0.168 4.168 29 O -0.592 6.592 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.120 0.880 40 H 0.427 0.573 41 H 0.346 0.654 42 H 0.348 0.652 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.005 0.995 46 H -0.003 1.003 47 H 0.262 0.738 48 H 0.152 0.848 49 H 0.085 0.915 50 H 0.110 0.890 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.264 8.578 25.596 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.336 5.336 4 C 0.034 3.966 5 C -0.090 4.090 6 C -0.140 4.140 7 C -0.130 4.130 8 C -0.156 4.156 9 C 0.037 3.963 10 N -0.305 5.305 11 C 0.276 3.724 12 O -0.437 6.437 13 C -0.026 4.026 14 H 0.136 0.864 15 N -0.347 5.347 16 C -0.121 4.121 17 C 0.002 3.998 18 C -0.579 4.579 19 H 0.073 0.927 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.783 3.217 23 H -0.188 1.188 24 H -0.209 1.209 25 H -0.202 1.202 26 C -0.145 4.145 27 C 0.292 3.708 28 C -0.227 4.227 29 O -0.473 6.473 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.266 0.734 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.024 0.976 46 H 0.016 0.984 47 H 0.070 0.930 48 H 0.169 0.831 49 H 0.104 0.896 50 H 0.128 0.872 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.710 8.997 24.977 28.268 hybrid contribution -0.193 0.485 -0.401 0.658 sum -9.903 9.482 24.576 28.142 Atomic orbital electron populations 1.22188 0.94805 1.03381 1.02295 1.21879 0.95079 0.80499 1.05017 1.48182 1.65044 1.15476 1.04902 1.20308 0.91423 0.98760 0.86125 1.20105 0.96669 0.94699 0.97509 1.21205 0.92737 0.99967 1.00092 1.21195 0.97178 0.97272 0.97339 1.21279 0.99434 0.96505 0.98390 1.17958 0.93723 0.90499 0.94110 1.43590 1.38383 1.14520 1.33985 1.22719 0.78736 0.90319 0.80586 1.90652 1.49043 1.32210 1.71826 1.21667 0.91826 0.95465 0.93592 0.86446 1.58978 1.02408 1.43447 1.29843 1.21407 0.96315 0.99437 0.94903 1.18832 0.95794 0.91951 0.93235 1.21748 1.16357 1.07492 1.12295 0.92662 1.25883 0.97943 0.95342 1.00474 1.70109 1.37446 1.12121 1.37275 0.85509 0.79048 0.78289 0.78836 1.18843 1.20896 1.20236 1.20984 0.94082 0.98987 1.00418 1.21552 0.75804 0.86234 0.87163 1.21993 1.05700 1.02449 0.92581 1.90683 1.47695 1.20608 1.88345 0.89827 0.92326 0.92893 0.89320 0.88309 0.87333 0.90395 0.86126 0.84891 0.86256 0.73444 0.84041 0.83874 0.91078 0.94046 0.97615 0.98412 0.92965 0.83059 0.89649 0.87161 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.24 71.98 0.74 -0.08 16 2 C 0.10 0.61 5.93 86.38 0.51 1.12 16 3 N -0.60 -7.86 2.46 -826.15 -2.03 -9.89 16 4 C 0.16 2.43 5.53 85.63 0.47 2.90 16 5 C -0.09 -1.72 5.46 -19.89 -0.11 -1.83 16 6 C -0.12 -2.78 9.70 22.29 0.22 -2.57 16 7 C -0.11 -2.69 10.04 22.25 0.22 -2.47 16 8 C -0.14 -3.64 8.70 22.39 0.19 -3.45 16 9 C 0.13 3.15 6.30 38.15 0.24 3.39 16 10 N -0.66 -15.04 5.34 -303.51 -1.62 -16.66 16 11 C 0.49 14.18 6.91 87.65 0.61 14.78 16 12 O -0.56 -19.45 13.69 -3.06 -0.04 -19.49 16 13 C 0.09 2.77 3.15 44.17 0.14 2.91 16 14 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 15 N -0.82 -26.18 8.44 -171.80 -1.45 -27.63 16 16 C -0.08 -3.13 4.78 30.59 0.15 -2.98 16 17 C 0.04 1.95 4.86 29.85 0.15 2.10 16 18 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 19 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 20 C 0.00 0.08 5.46 84.65 0.46 0.54 16 21 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 22 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 C -0.12 -2.36 9.62 22.39 0.22 -2.14 16 27 C 0.50 8.46 7.78 87.66 0.68 9.15 16 28 C -0.17 -1.38 8.88 71.24 0.63 -0.75 16 29 O -0.59 -15.53 16.20 -3.03 -0.05 -15.58 16 30 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.06 0.29 7.23 -2.38 -0.02 0.27 16 32 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.09 0.48 8.07 -2.38 -0.02 0.46 16 34 H 0.10 0.30 6.43 -2.39 -0.02 0.29 16 35 H 0.11 1.19 8.01 -2.39 -0.02 1.17 16 36 H 0.08 1.47 7.37 -2.39 -0.02 1.46 16 37 H 0.12 2.91 7.59 -2.91 -0.02 2.89 16 38 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.12 3.61 6.22 -2.91 -0.02 3.59 16 40 H 0.43 7.11 8.82 -92.71 -0.82 6.29 16 41 H 0.35 11.46 8.58 -89.69 -0.77 10.69 16 42 H 0.35 9.45 9.06 -89.70 -0.81 8.63 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.01 0.30 7.75 -2.38 -0.02 0.28 16 46 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 47 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 49 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 50 H 0.11 0.40 7.20 -2.39 -0.02 0.38 16 51 H 0.11 0.49 7.39 -2.39 -0.02 0.47 16 Total: -1.00 -76.72 421.58 1.43 -75.29 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -1.44 Total: 32.64 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 5.75 Total: -9.03 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.81 Total: -109.45 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.09 Total: -35.08 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.72 1.43 -75.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424089919.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.087 kcal (2) G-P(sol) polarization free energy of solvation -76.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds