Wall clock time and date at job start Wed Apr 1 2020 04:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47437 * 2 1 4 4 C 1.46895 * 111.00212 * 66.04356 * 3 2 1 5 5 C 1.53004 * 109.47161 * 197.21775 * 4 3 2 6 6 C 1.46900 * 110.99936 * 190.00120 * 3 2 1 7 7 C 1.53003 * 109.47482 * 76.79941 * 6 3 2 8 8 C 1.53000 * 109.47183 * 181.59721 * 7 6 3 9 9 N 1.46498 * 109.47245 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00403 * 179.97438 * 9 8 7 11 11 O 1.21357 * 119.99602 * 0.02562 * 10 9 8 12 12 C 1.49356 * 120.00015 * 180.02562 * 10 9 8 13 13 O 1.21376 * 119.99857 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99824 * 180.02562 * 12 10 9 15 15 C 1.39736 * 120.00339 * 184.98927 * 14 12 10 16 16 C 1.39347 * 119.94928 * 34.76885 * 15 14 12 17 17 C 1.38474 * 120.42178 * 180.02562 * 16 15 14 18 18 C 1.37694 * 120.32621 * 0.27929 * 17 16 15 19 19 C 1.40740 * 119.89675 * 359.49634 * 18 17 16 20 20 C 1.41414 * 120.20730 * 180.25184 * 19 18 17 21 21 H 1.08000 * 120.00096 * 329.92421 * 20 19 18 22 22 C 1.39936 * 120.00230 * 149.92577 * 20 19 18 23 23 N 1.30825 * 120.00152 * 165.14835 * 22 20 19 24 24 Si 1.86804 * 119.99603 * 345.14926 * 22 20 19 25 25 H 1.48498 * 109.46967 * 91.16389 * 24 22 20 26 26 H 1.48502 * 109.46969 * 211.16002 * 24 22 20 27 27 H 1.48493 * 109.47295 * 331.16300 * 24 22 20 28 28 C 1.38296 * 119.95542 * 214.79543 * 15 14 12 29 29 H 1.08994 * 109.47530 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46860 * 300.00608 * 1 2 3 31 31 H 1.09008 * 109.46796 * 60.00310 * 1 2 3 32 32 H 1.09005 * 109.47001 * 239.99264 * 2 1 3 33 33 H 1.09008 * 109.47111 * 120.00137 * 2 1 3 34 34 H 1.09001 * 109.47149 * 317.21755 * 4 3 2 35 35 H 1.09001 * 109.47079 * 77.22057 * 4 3 2 36 36 H 1.09002 * 109.47062 * 183.87798 * 5 4 3 37 37 H 1.08998 * 109.47200 * 303.88307 * 5 4 3 38 38 H 1.08996 * 109.46755 * 63.87800 * 5 4 3 39 39 H 1.09004 * 109.47047 * 316.79767 * 6 3 2 40 40 H 1.09002 * 109.47355 * 196.80477 * 6 3 2 41 41 H 1.09001 * 109.46473 * 61.60196 * 7 6 3 42 42 H 1.09000 * 109.47230 * 301.60207 * 7 6 3 43 43 H 1.08998 * 109.46737 * 60.00399 * 8 7 6 44 44 H 1.09000 * 109.47435 * 300.00361 * 8 7 6 45 45 H 0.97004 * 119.99725 * 0.02562 * 9 8 7 46 46 H 0.97005 * 119.99975 * 4.98667 * 14 12 10 47 47 H 1.07997 * 119.79325 * 0.02855 * 16 15 14 48 48 H 1.08003 * 119.83368 * 180.02562 * 17 16 15 49 49 H 1.08004 * 120.05043 * 179.74159 * 18 17 16 50 50 H 0.96998 * 120.00206 * 179.97438 * 23 22 20 51 51 H 1.07997 * 120.16290 * 359.95538 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0669 1.2532 5 6 1.7989 3.5797 1.0637 6 6 3.4685 1.4310 -0.2382 7 6 3.7488 1.1996 -1.7244 8 6 5.2596 1.2079 -1.9659 9 7 5.5279 0.9857 -3.3889 10 6 6.7982 0.9534 -3.8381 11 8 7.7197 1.1078 -3.0637 12 6 7.0717 0.7274 -5.2889 13 8 6.1499 0.5734 -6.0634 14 7 8.3419 0.6946 -5.7381 15 6 8.5962 0.5878 -7.1080 16 6 7.7463 1.2052 -8.0235 17 6 7.9887 1.1053 -9.3831 18 6 9.0700 0.3892 -9.8458 19 6 9.9399 -0.2358 -8.9330 20 6 11.0555 -0.9684 -9.4007 21 1 11.0123 -1.4647 -10.3590 22 6 12.2152 -1.0504 -8.6220 23 7 13.1277 -1.9458 -8.8996 24 14 12.4604 0.1189 -7.1859 25 1 11.9147 -0.4951 -5.9489 26 1 13.9102 0.3866 -7.0076 27 1 11.7515 1.3946 -7.4597 28 6 9.6906 -0.1310 -7.5532 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6442 1.8210 1.5268 35 1 2.3454 1.7412 2.0446 36 1 1.6067 4.0823 2.0116 37 1 2.8064 3.8189 0.7233 38 1 1.0753 3.9156 0.3210 39 1 3.9582 0.6541 0.3491 40 1 3.8544 2.4068 0.0567 41 1 3.2829 1.9925 -2.3096 42 1 3.3379 0.2361 -2.0259 43 1 5.7254 0.4151 -1.3806 44 1 5.6705 2.1714 -1.6644 45 1 4.7913 0.8627 -4.0079 46 1 9.0798 0.7451 -5.1104 47 1 6.8931 1.7653 -7.6704 48 1 7.3240 1.5880 -10.0843 49 1 9.2525 0.3107 -10.9074 50 1 13.9317 -2.0024 -8.3601 51 1 10.3502 -0.6097 -6.8446 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453561107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:26 Heat of formation + Delta-G solvation = -50.870732 kcal Electronic energy + Delta-G solvation = -29249.724050 eV Core-core repulsion = 25148.671350 eV Total energy + Delta-G solvation = -4101.052700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.72231 -39.11143 -38.66969 -37.41601 -35.89449 -34.50367 -33.36781 -32.50673 -32.27125 -30.41826 -29.34334 -28.90152 -26.14725 -25.21948 -24.04897 -23.50136 -22.16104 -21.71962 -21.13058 -20.66159 -19.71506 -18.54728 -17.59913 -16.79533 -16.54583 -16.23110 -16.12484 -15.91790 -15.30570 -15.22581 -15.13348 -14.92016 -14.57593 -14.37372 -14.12388 -13.84688 -13.50127 -13.16779 -13.00804 -12.76992 -12.59596 -12.49060 -12.37534 -12.19873 -12.06533 -11.96849 -11.89478 -11.81485 -11.71629 -11.51212 -11.03387 -10.98203 -10.86300 -10.85174 -10.49318 -10.21749 -9.79771 -9.76819 -9.44376 -9.33541 -9.04307 -8.81723 -7.68849 -7.30806 -6.95750 -4.53477 1.37873 2.32424 2.54851 2.60979 3.05641 3.16283 3.27484 3.33806 3.39341 3.76363 3.94239 4.39218 4.42441 4.46320 4.56126 4.58715 4.68900 4.72538 4.78642 4.98714 5.01282 5.02123 5.10713 5.18590 5.25087 5.32207 5.34840 5.43370 5.53712 5.55401 5.66103 5.73590 5.80050 5.82069 5.94323 6.02625 6.21613 6.35542 6.46267 6.58638 6.60559 6.61775 6.66253 6.96040 7.04891 7.28849 7.31485 7.60070 7.64205 7.76896 7.88984 8.02313 8.20085 8.34357 8.59681 8.76277 10.06867 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020667 B = 0.001740 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.507867 B =16083.969174 C =16623.111195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 N -0.539 5.539 4 C 0.046 3.954 5 C -0.148 4.148 6 C 0.056 3.944 7 C -0.127 4.127 8 C 0.118 3.882 9 N -0.702 5.702 10 C 0.511 3.489 11 O -0.521 6.521 12 C 0.501 3.499 13 O -0.502 6.502 14 N -0.637 5.637 15 C 0.165 3.835 16 C -0.229 4.229 17 C -0.073 4.073 18 C -0.209 4.209 19 C 0.105 3.895 20 C -0.446 4.446 21 H 0.093 0.907 22 C 0.083 3.917 23 N -0.810 5.810 24 Si 0.912 3.088 25 H -0.271 1.271 26 H -0.291 1.291 27 H -0.245 1.245 28 C -0.255 4.255 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.414 0.586 46 H 0.414 0.586 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.285 0.715 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.887 6.848 20.071 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.081 4.081 3 N -0.264 5.264 4 C -0.082 4.082 5 C -0.206 4.206 6 C -0.073 4.073 7 C -0.165 4.165 8 C -0.005 4.005 9 N -0.356 5.356 10 C 0.291 3.709 11 O -0.396 6.396 12 C 0.282 3.718 13 O -0.377 6.377 14 N -0.282 5.282 15 C 0.073 3.927 16 C -0.250 4.250 17 C -0.092 4.092 18 C -0.229 4.229 19 C 0.102 3.898 20 C -0.475 4.475 21 H 0.111 0.889 22 C -0.136 4.136 23 N -0.435 5.435 24 Si 0.739 3.261 25 H -0.197 1.197 26 H -0.219 1.219 27 H -0.168 1.168 28 C -0.277 4.277 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.251 0.749 46 H 0.250 0.750 47 H 0.125 0.875 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.096 0.904 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.877 6.958 19.743 28.867 hybrid contribution 0.726 -0.186 1.408 1.595 sum -19.151 6.773 21.150 29.325 Atomic orbital electron populations 1.21824 0.94782 1.01653 1.02487 1.22147 0.96199 0.88778 1.00969 1.61988 1.13563 1.15875 1.34961 1.22154 1.01085 0.95039 0.89916 1.21795 1.02447 0.94670 1.01692 1.22023 0.87872 1.01834 0.95529 1.21760 0.94005 1.03682 0.97061 1.21403 0.96021 1.02386 0.80735 1.45702 1.07785 1.71815 1.10320 1.20235 0.83649 0.77941 0.89064 1.90762 1.43764 1.47722 1.57358 1.19978 0.84157 0.79289 0.88399 1.90780 1.43448 1.46581 1.56857 1.43223 1.07476 1.69368 1.08114 1.17470 0.97090 0.98028 0.80086 1.20312 1.03065 1.08995 0.92585 1.20540 0.96403 0.98076 0.94170 1.21106 0.99031 1.04250 0.98472 1.17508 0.92880 0.89396 0.90054 1.19476 0.96048 1.26411 1.05546 0.88897 1.26149 0.95454 0.94422 0.97555 1.69665 1.08393 1.28015 1.37381 0.86345 0.76523 0.82755 0.80497 1.19706 1.21859 1.16779 1.20861 1.01454 1.08765 0.96578 0.92240 0.92712 0.91709 0.90438 0.94946 0.90432 0.94862 0.92416 0.92534 0.91889 0.94176 0.90209 0.90046 0.90934 0.91054 0.90867 0.74925 0.75006 0.87513 0.88146 0.87826 0.90427 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.88 37.16 0.37 -0.42 16 2 C 0.05 0.28 5.50 -3.83 -0.02 0.26 16 3 N -0.54 -3.47 4.38 -234.62 -1.03 -4.50 16 4 C 0.05 0.26 5.55 -3.82 -0.02 0.24 16 5 C -0.15 -0.79 10.04 37.16 0.37 -0.41 16 6 C 0.06 0.35 4.82 -3.82 -0.02 0.33 16 7 C -0.13 -0.83 5.47 -26.73 -0.15 -0.97 16 8 C 0.12 1.01 5.67 -4.04 -0.02 0.98 16 9 N -0.70 -7.69 5.55 -60.76 -0.34 -8.03 16 10 C 0.51 7.48 7.89 -11.63 -0.09 7.39 16 11 O -0.52 -8.56 16.48 5.49 0.09 -8.47 16 12 C 0.50 8.70 7.61 -11.63 -0.09 8.61 16 13 O -0.50 -9.52 14.23 5.47 0.08 -9.44 16 14 N -0.64 -12.07 5.31 -10.34 -0.05 -12.12 16 15 C 0.16 3.65 6.24 -83.82 -0.52 3.13 16 16 C -0.23 -4.98 8.66 -39.08 -0.34 -5.32 16 17 C -0.07 -1.55 10.01 -39.69 -0.40 -1.95 16 18 C -0.21 -4.82 9.79 -38.84 -0.38 -5.20 16 19 C 0.11 2.65 5.13 -106.85 -0.55 2.10 16 20 C -0.45 -11.96 9.59 -37.74 -0.36 -12.32 16 21 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 22 C 0.08 2.15 5.44 -17.34 -0.09 2.06 16 23 N -0.81 -21.49 13.93 55.55 0.77 -20.72 16 24 Si 0.91 20.62 24.45 -169.99 -4.16 16.47 16 25 H -0.27 -5.90 6.55 56.52 0.37 -5.53 16 26 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.24 -5.62 6.88 56.52 0.39 -5.23 16 28 C -0.26 -6.13 7.05 -38.67 -0.27 -6.40 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.27 6.27 -51.93 -0.33 -0.06 16 31 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.08 0.47 6.68 -51.93 -0.35 0.12 16 33 H 0.03 0.19 8.12 -51.92 -0.42 -0.23 16 34 H 0.08 0.40 5.92 -51.93 -0.31 0.10 16 35 H 0.03 0.19 8.03 -51.93 -0.42 -0.23 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.32 6.52 -51.93 -0.34 -0.02 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.04 0.25 7.98 -51.93 -0.41 -0.17 16 40 H 0.08 0.47 6.28 -51.93 -0.33 0.15 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.47 6.80 -51.93 -0.35 0.12 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.41 4.09 7.94 -40.82 -0.32 3.77 16 46 H 0.41 7.20 8.30 -40.82 -0.34 6.86 16 47 H 0.11 2.23 6.50 -52.49 -0.34 1.89 16 48 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 49 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 50 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 51 H 0.11 2.54 4.43 -52.49 -0.23 2.31 16 LS Contribution 408.44 15.07 6.16 6.16 Total: -1.00 -29.67 408.44 -8.96 -38.63 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -7.89 Total: 9.93 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.59 Total: -7.90 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.65 Total: -45.37 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.17 Total: -17.91 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.16 Total: 16.47 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.67 -8.96 -38.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453561107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.244 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds