Wall clock time and date at job start Wed Apr 1 2020 04:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47437 * 2 1 4 4 C 1.46895 * 111.00212 * 66.04356 * 3 2 1 5 5 C 1.53004 * 109.47161 * 197.21775 * 4 3 2 6 6 C 1.46900 * 110.99936 * 190.00120 * 3 2 1 7 7 C 1.53003 * 109.47482 * 76.79941 * 6 3 2 8 8 C 1.53000 * 109.47183 * 181.59721 * 7 6 3 9 9 N 1.46498 * 109.47245 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00403 * 179.97438 * 9 8 7 11 11 O 1.21357 * 119.99602 * 0.02562 * 10 9 8 12 12 C 1.49356 * 120.00015 * 180.02562 * 10 9 8 13 13 O 1.21376 * 119.99857 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99824 * 180.02562 * 12 10 9 15 15 C 1.39736 * 120.00339 * 184.98927 * 14 12 10 16 16 C 1.39347 * 119.94928 * 34.76885 * 15 14 12 17 17 C 1.38474 * 120.42178 * 180.02562 * 16 15 14 18 18 C 1.37694 * 120.32621 * 0.27929 * 17 16 15 19 19 C 1.40740 * 119.89675 * 359.49634 * 18 17 16 20 20 C 1.41414 * 120.20730 * 180.25184 * 19 18 17 21 21 H 1.08000 * 120.00096 * 329.92421 * 20 19 18 22 22 C 1.39936 * 120.00230 * 149.92577 * 20 19 18 23 23 N 1.30825 * 120.00152 * 165.14835 * 22 20 19 24 24 Si 1.86804 * 119.99603 * 345.14926 * 22 20 19 25 25 H 1.48498 * 109.46967 * 91.16389 * 24 22 20 26 26 H 1.48502 * 109.46969 * 211.16002 * 24 22 20 27 27 H 1.48493 * 109.47295 * 331.16300 * 24 22 20 28 28 C 1.38296 * 119.95542 * 214.79543 * 15 14 12 29 29 H 1.08994 * 109.47530 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46860 * 300.00608 * 1 2 3 31 31 H 1.09008 * 109.46796 * 60.00310 * 1 2 3 32 32 H 1.09005 * 109.47001 * 239.99264 * 2 1 3 33 33 H 1.09008 * 109.47111 * 120.00137 * 2 1 3 34 34 H 1.09001 * 109.47149 * 317.21755 * 4 3 2 35 35 H 1.09001 * 109.47079 * 77.22057 * 4 3 2 36 36 H 1.09002 * 109.47062 * 183.87798 * 5 4 3 37 37 H 1.08998 * 109.47200 * 303.88307 * 5 4 3 38 38 H 1.08996 * 109.46755 * 63.87800 * 5 4 3 39 39 H 1.09004 * 109.47047 * 316.79767 * 6 3 2 40 40 H 1.09002 * 109.47355 * 196.80477 * 6 3 2 41 41 H 1.09001 * 109.46473 * 61.60196 * 7 6 3 42 42 H 1.09000 * 109.47230 * 301.60207 * 7 6 3 43 43 H 1.08998 * 109.46737 * 60.00399 * 8 7 6 44 44 H 1.09000 * 109.47435 * 300.00361 * 8 7 6 45 45 H 0.97004 * 119.99725 * 0.02562 * 9 8 7 46 46 H 0.97005 * 119.99975 * 4.98667 * 14 12 10 47 47 H 1.07997 * 119.79325 * 0.02855 * 16 15 14 48 48 H 1.08003 * 119.83368 * 180.02562 * 17 16 15 49 49 H 1.08004 * 120.05043 * 179.74159 * 18 17 16 50 50 H 0.96998 * 120.00206 * 179.97438 * 23 22 20 51 51 H 1.07997 * 120.16290 * 359.95538 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0669 1.2532 5 6 1.7989 3.5797 1.0637 6 6 3.4685 1.4310 -0.2382 7 6 3.7488 1.1996 -1.7244 8 6 5.2596 1.2079 -1.9659 9 7 5.5279 0.9857 -3.3889 10 6 6.7982 0.9534 -3.8381 11 8 7.7197 1.1078 -3.0637 12 6 7.0717 0.7274 -5.2889 13 8 6.1499 0.5734 -6.0634 14 7 8.3419 0.6946 -5.7381 15 6 8.5962 0.5878 -7.1080 16 6 7.7463 1.2052 -8.0235 17 6 7.9887 1.1053 -9.3831 18 6 9.0700 0.3892 -9.8458 19 6 9.9399 -0.2358 -8.9330 20 6 11.0555 -0.9684 -9.4007 21 1 11.0123 -1.4647 -10.3590 22 6 12.2152 -1.0504 -8.6220 23 7 13.1277 -1.9458 -8.8996 24 14 12.4604 0.1189 -7.1859 25 1 11.9147 -0.4951 -5.9489 26 1 13.9102 0.3866 -7.0076 27 1 11.7515 1.3946 -7.4597 28 6 9.6906 -0.1310 -7.5532 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6442 1.8210 1.5268 35 1 2.3454 1.7412 2.0446 36 1 1.6067 4.0823 2.0116 37 1 2.8064 3.8189 0.7233 38 1 1.0753 3.9156 0.3210 39 1 3.9582 0.6541 0.3491 40 1 3.8544 2.4068 0.0567 41 1 3.2829 1.9925 -2.3096 42 1 3.3379 0.2361 -2.0259 43 1 5.7254 0.4151 -1.3806 44 1 5.6705 2.1714 -1.6644 45 1 4.7913 0.8627 -4.0079 46 1 9.0798 0.7451 -5.1104 47 1 6.8931 1.7653 -7.6704 48 1 7.3240 1.5880 -10.0843 49 1 9.2525 0.3107 -10.9074 50 1 13.9317 -2.0024 -8.3601 51 1 10.3502 -0.6097 -6.8446 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453561107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:25 Heat of formation + Delta-G solvation = -71.037344 kcal Electronic energy + Delta-G solvation = -29250.598540 eV Core-core repulsion = 25148.671350 eV Total energy + Delta-G solvation = -4101.927190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.05958 -40.37253 -39.31083 -39.02244 -36.89387 -36.03486 -35.18358 -33.22520 -32.69619 -32.28139 -30.72463 -29.77522 -27.17573 -27.00226 -25.07565 -23.93587 -23.50189 -22.84437 -22.41222 -21.39804 -21.08358 -19.82186 -19.40486 -18.11190 -17.81417 -17.27765 -16.99851 -16.88634 -16.72171 -16.41502 -16.20419 -15.95168 -15.59534 -15.41663 -15.14835 -14.90659 -14.79351 -14.70330 -14.35381 -13.94838 -13.84760 -13.62685 -13.20385 -13.09240 -12.95136 -12.82583 -12.74120 -12.72163 -12.62790 -12.40946 -12.27988 -12.23506 -12.19324 -12.00242 -11.63711 -11.48991 -11.46602 -11.42850 -10.95196 -10.68819 -10.37902 -9.54173 -9.28409 -9.04638 -8.89635 -6.54082 0.03092 0.76817 0.79816 1.19776 1.24178 1.38403 1.47372 2.03318 2.09917 2.49790 2.60301 2.91541 3.29921 3.45499 3.87938 3.94275 4.05882 4.16113 4.22957 4.25579 4.31447 4.47292 4.47697 4.50530 4.60383 4.63355 4.65672 4.67190 4.72441 4.77495 4.84462 4.87192 4.89987 4.97859 5.05370 5.10391 5.12737 5.14333 5.25395 5.26479 5.37434 5.40111 5.47806 5.56689 5.80664 5.84763 5.92113 6.14658 6.16814 6.19524 6.25075 6.38013 6.59188 6.70805 6.79438 6.83999 8.18249 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020667 B = 0.001740 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.507867 B =16083.969174 C =16623.111195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 N -0.547 5.547 4 C 0.045 3.955 5 C -0.145 4.145 6 C 0.057 3.943 7 C -0.115 4.115 8 C 0.119 3.881 9 N -0.683 5.683 10 C 0.518 3.482 11 O -0.540 6.540 12 C 0.503 3.497 13 O -0.517 6.517 14 N -0.640 5.640 15 C 0.165 3.835 16 C -0.223 4.223 17 C -0.066 4.066 18 C -0.221 4.221 19 C 0.088 3.912 20 C -0.480 4.480 21 H 0.062 0.938 22 C 0.047 3.953 23 N -0.849 5.849 24 Si 0.961 3.039 25 H -0.257 1.257 26 H -0.278 1.278 27 H -0.251 1.251 28 C -0.266 4.266 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.034 0.966 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.421 0.579 46 H 0.421 0.579 47 H 0.121 0.879 48 H 0.138 0.862 49 H 0.111 0.889 50 H 0.294 0.706 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.000 8.358 22.155 32.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.272 5.272 4 C -0.083 4.083 5 C -0.203 4.203 6 C -0.071 4.071 7 C -0.153 4.153 8 C -0.004 4.004 9 N -0.336 5.336 10 C 0.297 3.703 11 O -0.417 6.417 12 C 0.286 3.714 13 O -0.392 6.392 14 N -0.286 5.286 15 C 0.072 3.928 16 C -0.244 4.244 17 C -0.085 4.085 18 C -0.241 4.241 19 C 0.085 3.915 20 C -0.510 4.510 21 H 0.080 0.920 22 C -0.167 4.167 23 N -0.476 5.476 24 Si 0.785 3.215 25 H -0.183 1.183 26 H -0.205 1.205 27 H -0.174 1.174 28 C -0.288 4.288 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.259 0.741 46 H 0.258 0.742 47 H 0.139 0.861 48 H 0.156 0.844 49 H 0.129 0.871 50 H 0.104 0.896 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.036 8.466 21.849 32.166 hybrid contribution 1.129 -0.605 0.768 1.494 sum -20.907 7.862 22.617 31.787 Atomic orbital electron populations 1.21794 0.94340 1.02038 1.02234 1.22174 0.96585 0.88586 1.00901 1.61998 1.13597 1.16166 1.35465 1.22185 1.01334 0.95131 0.89613 1.21771 1.02020 0.94526 1.01991 1.21998 0.87936 1.02088 0.95119 1.21645 0.92377 1.03859 0.97395 1.21573 0.97402 1.02569 0.78888 1.45720 1.06596 1.69699 1.11598 1.19681 0.84635 0.78551 0.87391 1.90768 1.44533 1.49253 1.57154 1.20458 0.83228 0.78058 0.89683 1.90765 1.43730 1.46983 1.57751 1.43211 1.08602 1.69801 1.07001 1.17537 0.96309 0.97087 0.81858 1.20648 1.02928 1.07980 0.92838 1.20915 0.95895 0.96851 0.94797 1.21313 0.99433 1.04516 0.98792 1.17663 0.92892 0.89729 0.91222 1.19467 0.97867 1.28534 1.05118 0.92005 1.26794 0.94864 0.95439 0.99624 1.69695 1.09299 1.29509 1.39056 0.85579 0.77051 0.80566 0.78296 1.18296 1.20477 1.17424 1.20887 1.02360 1.09446 0.96074 0.91574 0.92420 0.92450 0.90562 0.94939 0.90039 0.94807 0.91490 0.92828 0.92545 0.94090 0.89873 0.90013 0.90649 0.90936 0.90526 0.74089 0.74155 0.86096 0.84419 0.87087 0.89595 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.88 71.98 0.71 -0.61 16 2 C 0.05 0.46 5.50 86.30 0.47 0.94 16 3 N -0.55 -6.06 4.38 -896.21 -3.92 -9.98 16 4 C 0.04 0.43 5.55 86.31 0.48 0.91 16 5 C -0.15 -1.31 10.04 71.98 0.72 -0.58 16 6 C 0.06 0.59 4.82 86.30 0.42 1.00 16 7 C -0.11 -1.21 5.47 30.60 0.17 -1.05 16 8 C 0.12 1.71 5.67 86.38 0.49 2.20 16 9 N -0.68 -13.18 5.55 -464.51 -2.58 -15.76 16 10 C 0.52 13.97 7.89 87.24 0.69 14.65 16 11 O -0.54 -16.59 16.48 -3.27 -0.05 -16.65 16 12 C 0.50 16.38 7.61 87.24 0.66 17.04 16 13 O -0.52 -18.33 14.23 -3.33 -0.05 -18.37 16 14 N -0.64 -23.05 5.31 -304.99 -1.62 -24.67 16 15 C 0.16 7.03 6.24 38.16 0.24 7.27 16 16 C -0.22 -9.13 8.66 22.59 0.20 -8.94 16 17 C -0.07 -2.64 10.01 22.20 0.22 -2.42 16 18 C -0.22 -10.06 9.79 22.75 0.22 -9.84 16 19 C 0.09 4.48 5.13 -21.31 -0.11 4.38 16 20 C -0.48 -26.79 9.59 23.46 0.23 -26.57 16 21 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 22 C 0.05 2.53 5.44 85.25 0.46 2.99 16 23 N -0.85 -46.52 13.93 21.82 0.30 -46.21 16 24 Si 0.96 42.53 24.45 68.60 1.68 44.21 16 25 H -0.26 -10.72 6.55 99.48 0.65 -10.07 16 26 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.25 -11.21 6.88 99.48 0.68 -10.53 16 28 C -0.27 -12.65 7.05 22.86 0.16 -12.49 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.48 6.27 -2.39 -0.01 0.46 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.08 0.79 6.68 -2.38 -0.02 0.77 16 33 H 0.03 0.33 8.12 -2.38 -0.02 0.31 16 34 H 0.08 0.71 5.92 -2.39 -0.01 0.70 16 35 H 0.03 0.32 8.03 -2.39 -0.02 0.30 16 36 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.05 0.51 6.52 -2.39 -0.02 0.49 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.04 0.42 7.98 -2.38 -0.02 0.40 16 40 H 0.08 0.81 6.28 -2.39 -0.01 0.79 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.79 6.80 -2.39 -0.02 0.77 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.42 7.15 7.94 -92.71 -0.74 6.41 16 46 H 0.42 13.90 8.30 -92.70 -0.77 13.13 16 47 H 0.12 4.64 6.50 -2.91 -0.02 4.62 16 48 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 49 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 50 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 51 H 0.10 4.94 4.43 -2.91 -0.01 4.93 16 Total: -1.00 -63.79 408.44 -0.43 -64.21 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.62 Total: 34.34 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 6.43 Total: -11.11 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -7.82 Total: -96.63 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.10 Total: -35.02 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.68 Total: 44.21 kcal Total: -63.79 -0.43 -64.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453561107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.822 kcal (2) G-P(sol) polarization free energy of solvation -63.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds