Wall clock time and date at job start Wed Apr 1 2020 04:38:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46897 * 109.47437 * 2 1
4 4 C 1.46895 * 111.00212 * 66.04356 * 3 2 1
5 5 C 1.53004 * 109.47161 * 197.21775 * 4 3 2
6 6 C 1.46900 * 110.99936 * 190.00120 * 3 2 1
7 7 C 1.53003 * 109.47482 * 76.79941 * 6 3 2
8 8 C 1.53000 * 109.47183 * 181.59721 * 7 6 3
9 9 N 1.46498 * 109.47245 * 179.97438 * 8 7 6
10 10 C 1.34777 * 120.00403 * 179.97438 * 9 8 7
11 11 O 1.21357 * 119.99602 * 0.02562 * 10 9 8
12 12 C 1.49356 * 120.00015 * 180.02562 * 10 9 8
13 13 O 1.21376 * 119.99857 * 0.02562 * 12 10 9
14 14 N 1.34774 * 119.99824 * 180.02562 * 12 10 9
15 15 C 1.39736 * 120.00339 * 184.98927 * 14 12 10
16 16 C 1.39347 * 119.94928 * 34.76885 * 15 14 12
17 17 C 1.38474 * 120.42178 * 180.02562 * 16 15 14
18 18 C 1.37694 * 120.32621 * 0.27929 * 17 16 15
19 19 C 1.40740 * 119.89675 * 359.49634 * 18 17 16
20 20 C 1.41414 * 120.20730 * 180.25184 * 19 18 17
21 21 H 1.08000 * 120.00096 * 329.92421 * 20 19 18
22 22 C 1.39936 * 120.00230 * 149.92577 * 20 19 18
23 23 N 1.30825 * 120.00152 * 165.14835 * 22 20 19
24 24 Si 1.86804 * 119.99603 * 345.14926 * 22 20 19
25 25 H 1.48498 * 109.46967 * 91.16389 * 24 22 20
26 26 H 1.48502 * 109.46969 * 211.16002 * 24 22 20
27 27 H 1.48493 * 109.47295 * 331.16300 * 24 22 20
28 28 C 1.38296 * 119.95542 * 214.79543 * 15 14 12
29 29 H 1.08994 * 109.47530 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.46860 * 300.00608 * 1 2 3
31 31 H 1.09008 * 109.46796 * 60.00310 * 1 2 3
32 32 H 1.09005 * 109.47001 * 239.99264 * 2 1 3
33 33 H 1.09008 * 109.47111 * 120.00137 * 2 1 3
34 34 H 1.09001 * 109.47149 * 317.21755 * 4 3 2
35 35 H 1.09001 * 109.47079 * 77.22057 * 4 3 2
36 36 H 1.09002 * 109.47062 * 183.87798 * 5 4 3
37 37 H 1.08998 * 109.47200 * 303.88307 * 5 4 3
38 38 H 1.08996 * 109.46755 * 63.87800 * 5 4 3
39 39 H 1.09004 * 109.47047 * 316.79767 * 6 3 2
40 40 H 1.09002 * 109.47355 * 196.80477 * 6 3 2
41 41 H 1.09001 * 109.46473 * 61.60196 * 7 6 3
42 42 H 1.09000 * 109.47230 * 301.60207 * 7 6 3
43 43 H 1.08998 * 109.46737 * 60.00399 * 8 7 6
44 44 H 1.09000 * 109.47435 * 300.00361 * 8 7 6
45 45 H 0.97004 * 119.99725 * 0.02562 * 9 8 7
46 46 H 0.97005 * 119.99975 * 4.98667 * 14 12 10
47 47 H 1.07997 * 119.79325 * 0.02855 * 16 15 14
48 48 H 1.08003 * 119.83368 * 180.02562 * 17 16 15
49 49 H 1.08004 * 120.05043 * 179.74159 * 18 17 16
50 50 H 0.96998 * 120.00206 * 179.97438 * 23 22 20
51 51 H 1.07997 * 120.16290 * 359.95538 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.6702 2.0669 1.2532
5 6 1.7989 3.5797 1.0637
6 6 3.4685 1.4310 -0.2382
7 6 3.7488 1.1996 -1.7244
8 6 5.2596 1.2079 -1.9659
9 7 5.5279 0.9857 -3.3889
10 6 6.7982 0.9534 -3.8381
11 8 7.7197 1.1078 -3.0637
12 6 7.0717 0.7274 -5.2889
13 8 6.1499 0.5734 -6.0634
14 7 8.3419 0.6946 -5.7381
15 6 8.5962 0.5878 -7.1080
16 6 7.7463 1.2052 -8.0235
17 6 7.9887 1.1053 -9.3831
18 6 9.0700 0.3892 -9.8458
19 6 9.9399 -0.2358 -8.9330
20 6 11.0555 -0.9684 -9.4007
21 1 11.0123 -1.4647 -10.3590
22 6 12.2152 -1.0504 -8.6220
23 7 13.1277 -1.9458 -8.8996
24 14 12.4604 0.1189 -7.1859
25 1 11.9147 -0.4951 -5.9489
26 1 13.9102 0.3866 -7.0076
27 1 11.7515 1.3946 -7.4597
28 6 9.6906 -0.1310 -7.5532
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8901
32 1 1.8933 -0.5140 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 0.6442 1.8210 1.5268
35 1 2.3454 1.7412 2.0446
36 1 1.6067 4.0823 2.0116
37 1 2.8064 3.8189 0.7233
38 1 1.0753 3.9156 0.3210
39 1 3.9582 0.6541 0.3491
40 1 3.8544 2.4068 0.0567
41 1 3.2829 1.9925 -2.3096
42 1 3.3379 0.2361 -2.0259
43 1 5.7254 0.4151 -1.3806
44 1 5.6705 2.1714 -1.6644
45 1 4.7913 0.8627 -4.0079
46 1 9.0798 0.7451 -5.1104
47 1 6.8931 1.7653 -7.6704
48 1 7.3240 1.5880 -10.0843
49 1 9.2525 0.3107 -10.9074
50 1 13.9317 -2.0024 -8.3601
51 1 10.3502 -0.6097 -6.8446
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000453561107.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:25
Heat of formation + Delta-G solvation = -71.037344 kcal
Electronic energy + Delta-G solvation = -29250.598540 eV
Core-core repulsion = 25148.671350 eV
Total energy + Delta-G solvation = -4101.927190 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-42.05958 -40.37253 -39.31083 -39.02244 -36.89387 -36.03486 -35.18358 -33.22520
-32.69619 -32.28139 -30.72463 -29.77522 -27.17573 -27.00226 -25.07565 -23.93587
-23.50189 -22.84437 -22.41222 -21.39804 -21.08358 -19.82186 -19.40486 -18.11190
-17.81417 -17.27765 -16.99851 -16.88634 -16.72171 -16.41502 -16.20419 -15.95168
-15.59534 -15.41663 -15.14835 -14.90659 -14.79351 -14.70330 -14.35381 -13.94838
-13.84760 -13.62685 -13.20385 -13.09240 -12.95136 -12.82583 -12.74120 -12.72163
-12.62790 -12.40946 -12.27988 -12.23506 -12.19324 -12.00242 -11.63711 -11.48991
-11.46602 -11.42850 -10.95196 -10.68819 -10.37902 -9.54173 -9.28409 -9.04638
-8.89635 -6.54082 0.03092 0.76817 0.79816 1.19776 1.24178 1.38403
1.47372 2.03318 2.09917 2.49790 2.60301 2.91541 3.29921 3.45499
3.87938 3.94275 4.05882 4.16113 4.22957 4.25579 4.31447 4.47292
4.47697 4.50530 4.60383 4.63355 4.65672 4.67190 4.72441 4.77495
4.84462 4.87192 4.89987 4.97859 5.05370 5.10391 5.12737 5.14333
5.25395 5.26479 5.37434 5.40111 5.47806 5.56689 5.80664 5.84763
5.92113 6.14658 6.16814 6.19524 6.25075 6.38013 6.59188 6.70805
6.79438 6.83999 8.18249
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.020667 B = 0.001740 C = 0.001684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1354.507867 B =16083.969174 C =16623.111195
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.045 3.955
3 N -0.547 5.547
4 C 0.045 3.955
5 C -0.145 4.145
6 C 0.057 3.943
7 C -0.115 4.115
8 C 0.119 3.881
9 N -0.683 5.683
10 C 0.518 3.482
11 O -0.540 6.540
12 C 0.503 3.497
13 O -0.517 6.517
14 N -0.640 5.640
15 C 0.165 3.835
16 C -0.223 4.223
17 C -0.066 4.066
18 C -0.221 4.221
19 C 0.088 3.912
20 C -0.480 4.480
21 H 0.062 0.938
22 C 0.047 3.953
23 N -0.849 5.849
24 Si 0.961 3.039
25 H -0.257 1.257
26 H -0.278 1.278
27 H -0.251 1.251
28 C -0.266 4.266
29 H 0.065 0.935
30 H 0.057 0.943
31 H 0.056 0.944
32 H 0.076 0.924
33 H 0.032 0.968
34 H 0.081 0.919
35 H 0.034 0.966
36 H 0.066 0.934
37 H 0.053 0.947
38 H 0.055 0.945
39 H 0.041 0.959
40 H 0.083 0.917
41 H 0.081 0.919
42 H 0.075 0.925
43 H 0.072 0.928
44 H 0.076 0.924
45 H 0.421 0.579
46 H 0.421 0.579
47 H 0.121 0.879
48 H 0.138 0.862
49 H 0.111 0.889
50 H 0.294 0.706
51 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.000 8.358 22.155 32.322
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.082 4.082
3 N -0.272 5.272
4 C -0.083 4.083
5 C -0.203 4.203
6 C -0.071 4.071
7 C -0.153 4.153
8 C -0.004 4.004
9 N -0.336 5.336
10 C 0.297 3.703
11 O -0.417 6.417
12 C 0.286 3.714
13 O -0.392 6.392
14 N -0.286 5.286
15 C 0.072 3.928
16 C -0.244 4.244
17 C -0.085 4.085
18 C -0.241 4.241
19 C 0.085 3.915
20 C -0.510 4.510
21 H 0.080 0.920
22 C -0.167 4.167
23 N -0.476 5.476
24 Si 0.785 3.215
25 H -0.183 1.183
26 H -0.205 1.205
27 H -0.174 1.174
28 C -0.288 4.288
29 H 0.084 0.916
30 H 0.076 0.924
31 H 0.075 0.925
32 H 0.094 0.906
33 H 0.051 0.949
34 H 0.100 0.900
35 H 0.052 0.948
36 H 0.085 0.915
37 H 0.072 0.928
38 H 0.075 0.925
39 H 0.059 0.941
40 H 0.101 0.899
41 H 0.100 0.900
42 H 0.094 0.906
43 H 0.091 0.909
44 H 0.095 0.905
45 H 0.259 0.741
46 H 0.258 0.742
47 H 0.139 0.861
48 H 0.156 0.844
49 H 0.129 0.871
50 H 0.104 0.896
51 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -22.036 8.466 21.849 32.166
hybrid contribution 1.129 -0.605 0.768 1.494
sum -20.907 7.862 22.617 31.787
Atomic orbital electron populations
1.21794 0.94340 1.02038 1.02234 1.22174 0.96585 0.88586 1.00901
1.61998 1.13597 1.16166 1.35465 1.22185 1.01334 0.95131 0.89613
1.21771 1.02020 0.94526 1.01991 1.21998 0.87936 1.02088 0.95119
1.21645 0.92377 1.03859 0.97395 1.21573 0.97402 1.02569 0.78888
1.45720 1.06596 1.69699 1.11598 1.19681 0.84635 0.78551 0.87391
1.90768 1.44533 1.49253 1.57154 1.20458 0.83228 0.78058 0.89683
1.90765 1.43730 1.46983 1.57751 1.43211 1.08602 1.69801 1.07001
1.17537 0.96309 0.97087 0.81858 1.20648 1.02928 1.07980 0.92838
1.20915 0.95895 0.96851 0.94797 1.21313 0.99433 1.04516 0.98792
1.17663 0.92892 0.89729 0.91222 1.19467 0.97867 1.28534 1.05118
0.92005 1.26794 0.94864 0.95439 0.99624 1.69695 1.09299 1.29509
1.39056 0.85579 0.77051 0.80566 0.78296 1.18296 1.20477 1.17424
1.20887 1.02360 1.09446 0.96074 0.91574 0.92420 0.92450 0.90562
0.94939 0.90039 0.94807 0.91490 0.92828 0.92545 0.94090 0.89873
0.90013 0.90649 0.90936 0.90526 0.74089 0.74155 0.86096 0.84419
0.87087 0.89595 0.87745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.32 9.88 71.98 0.71 -0.61 16
2 C 0.05 0.46 5.50 86.30 0.47 0.94 16
3 N -0.55 -6.06 4.38 -896.21 -3.92 -9.98 16
4 C 0.04 0.43 5.55 86.31 0.48 0.91 16
5 C -0.15 -1.31 10.04 71.98 0.72 -0.58 16
6 C 0.06 0.59 4.82 86.30 0.42 1.00 16
7 C -0.11 -1.21 5.47 30.60 0.17 -1.05 16
8 C 0.12 1.71 5.67 86.38 0.49 2.20 16
9 N -0.68 -13.18 5.55 -464.51 -2.58 -15.76 16
10 C 0.52 13.97 7.89 87.24 0.69 14.65 16
11 O -0.54 -16.59 16.48 -3.27 -0.05 -16.65 16
12 C 0.50 16.38 7.61 87.24 0.66 17.04 16
13 O -0.52 -18.33 14.23 -3.33 -0.05 -18.37 16
14 N -0.64 -23.05 5.31 -304.99 -1.62 -24.67 16
15 C 0.16 7.03 6.24 38.16 0.24 7.27 16
16 C -0.22 -9.13 8.66 22.59 0.20 -8.94 16
17 C -0.07 -2.64 10.01 22.20 0.22 -2.42 16
18 C -0.22 -10.06 9.79 22.75 0.22 -9.84 16
19 C 0.09 4.48 5.13 -21.31 -0.11 4.38 16
20 C -0.48 -26.79 9.59 23.46 0.23 -26.57 16
21 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16
22 C 0.05 2.53 5.44 85.25 0.46 2.99 16
23 N -0.85 -46.52 13.93 21.82 0.30 -46.21 16
24 Si 0.96 42.53 24.45 68.60 1.68 44.21 16
25 H -0.26 -10.72 6.55 99.48 0.65 -10.07 16
26 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16
27 H -0.25 -11.21 6.88 99.48 0.68 -10.53 16
28 C -0.27 -12.65 7.05 22.86 0.16 -12.49 16
29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16
30 H 0.06 0.48 6.27 -2.39 -0.01 0.46 16
31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16
32 H 0.08 0.79 6.68 -2.38 -0.02 0.77 16
33 H 0.03 0.33 8.12 -2.38 -0.02 0.31 16
34 H 0.08 0.71 5.92 -2.39 -0.01 0.70 16
35 H 0.03 0.32 8.03 -2.39 -0.02 0.30 16
36 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16
37 H 0.05 0.51 6.52 -2.39 -0.02 0.49 16
38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
39 H 0.04 0.42 7.98 -2.38 -0.02 0.40 16
40 H 0.08 0.81 6.28 -2.39 -0.01 0.79 16
41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
42 H 0.07 0.79 6.80 -2.39 -0.02 0.77 16
43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
45 H 0.42 7.15 7.94 -92.71 -0.74 6.41 16
46 H 0.42 13.90 8.30 -92.70 -0.77 13.13 16
47 H 0.12 4.64 6.50 -2.91 -0.02 4.62 16
48 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16
49 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16
50 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16
51 H 0.10 4.94 4.43 -2.91 -0.01 4.93 16
Total: -1.00 -63.79 408.44 -0.43 -64.21
By element:
Atomic # 1 Polarization: 34.96 SS G_CDS: -0.62 Total: 34.34 kcal
Atomic # 6 Polarization: -17.55 SS G_CDS: 6.43 Total: -11.11 kcal
Atomic # 7 Polarization: -88.81 SS G_CDS: -7.82 Total: -96.63 kcal
Atomic # 8 Polarization: -34.92 SS G_CDS: -0.10 Total: -35.02 kcal
Atomic # 14 Polarization: 42.53 SS G_CDS: 1.68 Total: 44.21 kcal
Total: -63.79 -0.43 -64.21 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000453561107.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.822 kcal
(2) G-P(sol) polarization free energy of solvation -63.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.611 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.215 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.037 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds