Wall clock time and date at job start Wed Apr 1 2020 05:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47215 * 2 1 4 4 C 1.46498 * 120.00050 * 263.50018 * 3 2 1 5 5 C 1.52999 * 109.47603 * 270.00368 * 4 3 2 6 6 C 1.52992 * 109.47066 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47226 * 179.97438 * 6 5 4 8 8 C 1.46893 * 111.00443 * 170.00149 * 7 6 5 9 9 C 1.46898 * 111.00115 * 293.95786 * 7 6 5 10 10 C 1.34779 * 119.99949 * 83.50804 * 3 2 1 11 11 O 1.21354 * 119.99753 * 174.72977 * 10 3 2 12 12 C 1.49354 * 120.00015 * 354.73021 * 10 3 2 13 13 O 1.21379 * 120.00201 * 0.64260 * 12 10 3 14 14 N 1.34777 * 119.99765 * 180.64368 * 12 10 3 15 15 C 1.39748 * 119.99664 * 185.47833 * 14 12 10 16 16 C 1.39340 * 119.95051 * 29.86861 * 15 14 12 17 17 C 1.38475 * 120.42166 * 179.97438 * 16 15 14 18 18 C 1.37698 * 120.32564 * 0.27163 * 17 16 15 19 19 C 1.40752 * 119.89570 * 359.49944 * 18 17 16 20 20 C 1.41412 * 120.20352 * 180.24657 * 19 18 17 21 21 H 1.08002 * 119.99780 * 213.23182 * 20 19 18 22 22 C 1.39930 * 120.00073 * 33.24067 * 20 19 18 23 23 N 1.30832 * 119.99994 * 6.40058 * 22 20 19 24 24 Si 1.86802 * 119.99927 * 186.40755 * 22 20 19 25 25 H 1.48498 * 109.47357 * 59.99376 * 24 22 20 26 26 H 1.48503 * 109.47249 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46912 * 299.99309 * 24 22 20 28 28 C 1.38299 * 119.94898 * 209.88501 * 15 14 12 29 29 H 1.09001 * 109.46738 * 300.00380 * 1 2 3 30 30 H 1.09001 * 109.47086 * 59.99866 * 1 2 3 31 31 H 1.08998 * 109.47495 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46738 * 239.99620 * 2 1 3 33 33 H 1.09001 * 109.47086 * 120.00134 * 2 1 3 34 34 H 1.08997 * 109.46917 * 30.00579 * 4 3 2 35 35 H 1.08999 * 109.46817 * 149.99774 * 4 3 2 36 36 H 1.08997 * 109.47156 * 300.00064 * 5 4 3 37 37 H 1.09004 * 109.46831 * 59.99933 * 5 4 3 38 38 H 1.09005 * 109.47701 * 300.00084 * 6 5 4 39 39 H 1.09004 * 109.47175 * 60.00358 * 6 5 4 40 40 H 1.09000 * 109.47129 * 59.99764 * 8 7 6 41 41 H 1.08995 * 109.47797 * 180.02562 * 8 7 6 42 42 H 1.09002 * 109.46955 * 300.00153 * 8 7 6 43 43 H 1.09003 * 109.47135 * 59.99665 * 9 7 6 44 44 H 1.08992 * 109.47561 * 179.97438 * 9 7 6 45 45 H 1.09000 * 109.47263 * 299.99980 * 9 7 6 46 46 H 0.96997 * 120.00089 * 5.48122 * 14 12 10 47 47 H 1.07996 * 119.79507 * 0.02562 * 16 15 14 48 48 H 1.08003 * 119.83744 * 180.02562 * 17 16 15 49 49 H 1.08007 * 120.04904 * 179.74466 * 18 17 16 50 50 H 0.97005 * 119.99770 * 180.02562 * 23 22 20 51 51 H 1.07993 * 120.16986 * 359.96178 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3980 2.0239 -1.2605 5 6 3.8813 1.7699 -1.5362 6 6 4.2775 2.4406 -2.8530 7 7 5.7019 2.1973 -3.1174 8 6 6.0643 2.6181 -4.4773 9 6 6.5447 2.8658 -2.1172 10 6 2.1186 2.0605 1.1597 11 8 2.6121 3.1691 1.1728 12 6 1.6224 1.4489 2.4287 13 8 1.1395 0.3354 2.4175 14 7 1.7108 2.1335 3.5863 15 6 1.3533 1.5199 4.7899 16 6 1.5070 0.1434 4.9415 17 6 1.1564 -0.4746 6.1301 18 6 0.6464 0.2645 7.1740 19 6 0.4900 1.6566 7.0373 20 6 -0.0282 2.4227 8.1070 21 1 -0.6347 3.2929 7.9038 22 6 0.2450 2.0534 9.4288 23 7 1.0799 1.0769 9.6759 24 14 -0.5824 2.9547 10.8404 25 1 -2.0557 2.8096 10.7245 26 1 -0.1284 2.3765 12.1307 27 1 -0.2211 4.3941 10.7882 28 6 0.8472 2.2799 5.8287 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8013 1.6101 -2.0734 35 1 2.2202 3.0969 -1.1892 36 1 4.4780 2.1837 -0.7234 37 1 4.0590 0.6968 -1.6076 38 1 3.6807 2.0265 -3.6658 39 1 4.0997 3.5137 -2.7820 40 1 5.8643 3.6833 -4.5934 41 1 7.1238 2.4265 -4.6468 42 1 5.4736 2.0566 -5.2010 43 1 6.3033 2.4843 -1.1251 44 1 7.5941 2.6690 -2.3362 45 1 6.3622 3.9400 -2.1477 46 1 2.0225 3.0520 3.5840 47 1 1.9028 -0.4453 4.1272 48 1 1.2798 -1.5422 6.2375 49 1 0.3706 -0.2227 8.0976 50 1 1.2690 0.8207 10.5922 51 1 0.7280 3.3469 5.7125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453739253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:57 Heat of formation + Delta-G solvation = -33.373237 kcal Electronic energy + Delta-G solvation = -30196.761523 eV Core-core repulsion = 26096.467571 eV Total energy + Delta-G solvation = -4100.293952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.89141 -38.98079 -37.98493 -37.24056 -36.44043 -34.45923 -33.07299 -32.79106 -30.19916 -29.86530 -28.63200 -27.94099 -27.01740 -25.29161 -24.58853 -23.48989 -22.60251 -21.24048 -21.10648 -20.48275 -19.33061 -17.81235 -17.51038 -16.87140 -16.09040 -15.97423 -15.74952 -15.52770 -15.28632 -15.04440 -14.92479 -14.61354 -14.36446 -14.17883 -13.98496 -13.54421 -13.10754 -12.92496 -12.77676 -12.76332 -12.47505 -12.34932 -12.27764 -12.20873 -12.01441 -11.84813 -11.79810 -11.57858 -11.37619 -11.19668 -11.15922 -10.99037 -10.84120 -10.64081 -10.56257 -10.11541 -9.80352 -9.34096 -9.13966 -8.95433 -8.91052 -8.73918 -7.46355 -6.94871 -6.67931 -4.41845 1.48065 2.39729 2.79570 2.83062 3.08265 3.11143 3.19149 3.47231 3.57806 3.69082 3.96279 4.50654 4.60780 4.67668 4.73983 4.77124 4.92788 4.98297 5.02858 5.04722 5.21639 5.22805 5.29439 5.37324 5.41529 5.47169 5.47743 5.61141 5.61470 5.70298 5.79517 5.91884 6.01245 6.19158 6.21586 6.39027 6.45979 6.60248 6.63408 6.65747 6.79971 6.86941 6.99981 7.02041 7.23237 7.46827 7.49524 7.71202 7.93145 8.00938 8.04652 8.21767 8.38486 8.60937 8.88762 8.91249 10.27338 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.001942 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.325569 B =14414.378602 C =15018.878199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.585 5.585 4 C 0.116 3.884 5 C -0.133 4.133 6 C 0.058 3.942 7 N -0.548 5.548 8 C 0.024 3.976 9 C 0.020 3.980 10 C 0.509 3.491 11 O -0.524 6.524 12 C 0.494 3.506 13 O -0.495 6.495 14 N -0.631 5.631 15 C 0.142 3.858 16 C -0.217 4.217 17 C -0.100 4.100 18 C -0.151 4.151 19 C 0.122 3.878 20 C -0.468 4.468 21 H 0.076 0.924 22 C 0.074 3.926 23 N -0.808 5.808 24 Si 0.913 3.087 25 H -0.265 1.265 26 H -0.279 1.279 27 H -0.267 1.267 28 C -0.232 4.232 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.025 0.975 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.026 0.974 46 H 0.412 0.588 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.120 0.880 50 H 0.279 0.721 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.214 0.596 -22.360 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.319 5.319 4 C -0.007 4.007 5 C -0.172 4.172 6 C -0.071 4.071 7 N -0.272 5.272 8 C -0.124 4.124 9 C -0.128 4.128 10 C 0.292 3.708 11 O -0.400 6.400 12 C 0.276 3.724 13 O -0.371 6.371 14 N -0.275 5.275 15 C 0.050 3.950 16 C -0.238 4.238 17 C -0.119 4.119 18 C -0.171 4.171 19 C 0.119 3.881 20 C -0.499 4.499 21 H 0.094 0.906 22 C -0.142 4.142 23 N -0.435 5.435 24 Si 0.738 3.262 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.254 4.254 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.248 0.752 47 H 0.125 0.875 48 H 0.112 0.888 49 H 0.138 0.862 50 H 0.090 0.910 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.348 -0.237 -22.160 22.798 hybrid contribution -0.221 1.742 0.579 1.849 sum 5.127 1.506 -21.582 22.234 Atomic orbital electron populations 1.22116 0.95261 1.02551 1.01968 1.22001 0.95350 0.80669 1.04087 1.47848 1.63196 1.15061 1.05780 1.21501 0.95165 0.99233 0.84793 1.21965 0.95861 1.02091 0.97290 1.22051 0.88618 0.98577 0.97816 1.61967 1.03888 1.58427 1.02899 1.22379 1.01801 0.98315 0.89913 1.22454 0.97524 0.96363 0.96469 1.20351 0.79706 0.85556 0.85183 1.90733 1.43311 1.19689 1.86255 1.19931 0.81112 0.86634 0.84727 1.90711 1.42108 1.18679 1.85555 1.43212 1.62476 1.16739 1.05041 1.17479 1.00975 0.92783 0.83756 1.20422 1.12073 0.92613 0.98725 1.20626 0.99962 0.97870 0.93436 1.21451 1.03638 0.93926 0.98043 1.17381 0.88394 0.91720 0.90573 1.19442 1.29355 1.11111 0.90003 0.90593 1.25839 0.93537 0.94549 1.00280 1.69765 1.27007 1.24532 1.22198 0.86300 0.80359 0.80213 0.79372 1.18991 1.20411 1.19137 1.20823 1.10837 0.97740 0.95988 0.91309 0.93584 0.91498 0.90941 0.87537 0.90009 0.89847 0.91053 0.90706 0.90636 0.94514 0.95680 0.91348 0.91354 0.90860 0.91439 0.95503 0.75233 0.87467 0.88771 0.86201 0.90966 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.62 37.16 0.36 -1.42 16 2 C 0.10 1.09 5.70 -4.04 -0.02 1.07 16 3 N -0.59 -6.93 2.49 -174.23 -0.43 -7.36 16 4 C 0.12 1.07 5.34 -4.04 -0.02 1.05 16 5 C -0.13 -1.20 5.46 -26.74 -0.15 -1.34 16 6 C 0.06 0.45 4.96 -3.83 -0.02 0.43 16 7 N -0.55 -4.60 5.02 -251.27 -1.26 -5.86 16 8 C 0.02 0.16 9.57 60.06 0.57 0.73 16 9 C 0.02 0.16 9.32 60.06 0.56 0.72 16 10 C 0.51 7.63 7.67 -11.63 -0.09 7.54 16 11 O -0.52 -8.62 16.12 5.49 0.09 -8.53 16 12 C 0.49 8.51 7.30 -11.63 -0.08 8.42 16 13 O -0.49 -8.97 8.85 5.47 0.05 -8.93 16 14 N -0.63 -11.69 5.33 -10.34 -0.06 -11.75 16 15 C 0.14 3.14 6.33 -83.82 -0.53 2.61 16 16 C -0.22 -4.94 8.68 -39.08 -0.34 -5.28 16 17 C -0.10 -2.34 10.02 -39.69 -0.40 -2.74 16 18 C -0.15 -3.87 8.63 -38.83 -0.34 -4.21 16 19 C 0.12 3.20 5.51 -106.85 -0.59 2.62 16 20 C -0.47 -12.27 9.05 -37.74 -0.34 -12.61 16 21 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 22 C 0.07 1.84 5.30 -17.34 -0.09 1.75 16 23 N -0.81 -20.84 10.93 55.55 0.61 -20.24 16 24 Si 0.91 18.73 29.56 -169.99 -5.03 13.70 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 28 C -0.23 -5.56 9.69 -38.67 -0.37 -5.93 16 29 H 0.07 0.96 6.36 -51.93 -0.33 0.63 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.60 8.02 -51.93 -0.42 0.18 16 33 H 0.11 1.37 5.83 -51.93 -0.30 1.07 16 34 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 35 H 0.08 0.84 7.50 -51.93 -0.39 0.46 16 36 H 0.07 0.79 6.55 -51.93 -0.34 0.45 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 39 H 0.04 0.30 8.12 -51.93 -0.42 -0.13 16 40 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 41 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 43 H 0.07 0.66 6.47 -51.93 -0.34 0.32 16 44 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 45 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.41 6.91 8.28 -40.82 -0.34 6.57 16 47 H 0.11 2.34 6.14 -52.49 -0.32 2.01 16 48 H 0.09 1.97 8.06 -52.48 -0.42 1.55 16 49 H 0.12 3.17 6.41 -52.48 -0.34 2.83 16 50 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 51 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 410.93 15.07 6.19 6.19 Total: -1.00 -28.89 410.93 -9.87 -38.76 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -8.14 Total: 10.59 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.89 Total: -6.58 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -1.14 Total: -45.21 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.14 Total: -17.46 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -28.89 -9.87 -38.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453739253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.385 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds