Wall clock time and date at job start Wed Apr 1 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47215 * 2 1 4 4 C 1.46498 * 120.00050 * 263.50018 * 3 2 1 5 5 C 1.52999 * 109.47603 * 270.00368 * 4 3 2 6 6 C 1.52992 * 109.47066 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47226 * 179.97438 * 6 5 4 8 8 C 1.46893 * 111.00443 * 170.00149 * 7 6 5 9 9 C 1.46898 * 111.00115 * 293.95786 * 7 6 5 10 10 C 1.34779 * 119.99949 * 83.50804 * 3 2 1 11 11 O 1.21354 * 119.99753 * 174.72977 * 10 3 2 12 12 C 1.49354 * 120.00015 * 354.73021 * 10 3 2 13 13 O 1.21379 * 120.00201 * 0.64260 * 12 10 3 14 14 N 1.34777 * 119.99765 * 180.64368 * 12 10 3 15 15 C 1.39748 * 119.99664 * 185.47833 * 14 12 10 16 16 C 1.39340 * 119.95051 * 29.86861 * 15 14 12 17 17 C 1.38475 * 120.42166 * 179.97438 * 16 15 14 18 18 C 1.37698 * 120.32564 * 0.27163 * 17 16 15 19 19 C 1.40752 * 119.89570 * 359.49944 * 18 17 16 20 20 C 1.41412 * 120.20352 * 180.24657 * 19 18 17 21 21 H 1.08002 * 119.99780 * 213.23182 * 20 19 18 22 22 C 1.39930 * 120.00073 * 33.24067 * 20 19 18 23 23 N 1.30832 * 119.99994 * 6.40058 * 22 20 19 24 24 Si 1.86802 * 119.99927 * 186.40755 * 22 20 19 25 25 H 1.48498 * 109.47357 * 59.99376 * 24 22 20 26 26 H 1.48503 * 109.47249 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46912 * 299.99309 * 24 22 20 28 28 C 1.38299 * 119.94898 * 209.88501 * 15 14 12 29 29 H 1.09001 * 109.46738 * 300.00380 * 1 2 3 30 30 H 1.09001 * 109.47086 * 59.99866 * 1 2 3 31 31 H 1.08998 * 109.47495 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46738 * 239.99620 * 2 1 3 33 33 H 1.09001 * 109.47086 * 120.00134 * 2 1 3 34 34 H 1.08997 * 109.46917 * 30.00579 * 4 3 2 35 35 H 1.08999 * 109.46817 * 149.99774 * 4 3 2 36 36 H 1.08997 * 109.47156 * 300.00064 * 5 4 3 37 37 H 1.09004 * 109.46831 * 59.99933 * 5 4 3 38 38 H 1.09005 * 109.47701 * 300.00084 * 6 5 4 39 39 H 1.09004 * 109.47175 * 60.00358 * 6 5 4 40 40 H 1.09000 * 109.47129 * 59.99764 * 8 7 6 41 41 H 1.08995 * 109.47797 * 180.02562 * 8 7 6 42 42 H 1.09002 * 109.46955 * 300.00153 * 8 7 6 43 43 H 1.09003 * 109.47135 * 59.99665 * 9 7 6 44 44 H 1.08992 * 109.47561 * 179.97438 * 9 7 6 45 45 H 1.09000 * 109.47263 * 299.99980 * 9 7 6 46 46 H 0.96997 * 120.00089 * 5.48122 * 14 12 10 47 47 H 1.07996 * 119.79507 * 0.02562 * 16 15 14 48 48 H 1.08003 * 119.83744 * 180.02562 * 17 16 15 49 49 H 1.08007 * 120.04904 * 179.74466 * 18 17 16 50 50 H 0.97005 * 119.99770 * 180.02562 * 23 22 20 51 51 H 1.07993 * 120.16986 * 359.96178 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3980 2.0239 -1.2605 5 6 3.8813 1.7699 -1.5362 6 6 4.2775 2.4406 -2.8530 7 7 5.7019 2.1973 -3.1174 8 6 6.0643 2.6181 -4.4773 9 6 6.5447 2.8658 -2.1172 10 6 2.1186 2.0605 1.1597 11 8 2.6121 3.1691 1.1728 12 6 1.6224 1.4489 2.4287 13 8 1.1395 0.3354 2.4175 14 7 1.7108 2.1335 3.5863 15 6 1.3533 1.5199 4.7899 16 6 1.5070 0.1434 4.9415 17 6 1.1564 -0.4746 6.1301 18 6 0.6464 0.2645 7.1740 19 6 0.4900 1.6566 7.0373 20 6 -0.0282 2.4227 8.1070 21 1 -0.6347 3.2929 7.9038 22 6 0.2450 2.0534 9.4288 23 7 1.0799 1.0769 9.6759 24 14 -0.5824 2.9547 10.8404 25 1 -2.0557 2.8096 10.7245 26 1 -0.1284 2.3765 12.1307 27 1 -0.2211 4.3941 10.7882 28 6 0.8472 2.2799 5.8287 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8013 1.6101 -2.0734 35 1 2.2202 3.0969 -1.1892 36 1 4.4780 2.1837 -0.7234 37 1 4.0590 0.6968 -1.6076 38 1 3.6807 2.0265 -3.6658 39 1 4.0997 3.5137 -2.7820 40 1 5.8643 3.6833 -4.5934 41 1 7.1238 2.4265 -4.6468 42 1 5.4736 2.0566 -5.2010 43 1 6.3033 2.4843 -1.1251 44 1 7.5941 2.6690 -2.3362 45 1 6.3622 3.9400 -2.1477 46 1 2.0225 3.0520 3.5840 47 1 1.9028 -0.4453 4.1272 48 1 1.2798 -1.5422 6.2375 49 1 0.3706 -0.2227 8.0976 50 1 1.2690 0.8207 10.5922 51 1 0.7280 3.3469 5.7125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453739253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:56 Heat of formation + Delta-G solvation = -50.341376 kcal Electronic energy + Delta-G solvation = -30197.497316 eV Core-core repulsion = 26096.467571 eV Total energy + Delta-G solvation = -4101.029746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18694 -40.34950 -38.93773 -38.65459 -37.54638 -36.06936 -34.83481 -33.59191 -31.76965 -31.11472 -30.33084 -28.51883 -27.94790 -27.18498 -25.70417 -24.35217 -23.73169 -22.94809 -22.16253 -21.76808 -20.66755 -19.45893 -18.83074 -18.04553 -17.39069 -17.14503 -16.93911 -16.75439 -16.50019 -16.36160 -16.13705 -15.84668 -15.32326 -15.25060 -14.96810 -14.83517 -14.69520 -14.52759 -14.07830 -13.81556 -13.64311 -13.37029 -13.20707 -13.15903 -13.03585 -13.02301 -12.83692 -12.63177 -12.58812 -12.47128 -12.41646 -12.23005 -12.18503 -12.03601 -11.84186 -11.57150 -11.55366 -11.11409 -10.87886 -10.38002 -9.91947 -9.36963 -9.34557 -8.76191 -8.55162 -6.39878 0.13139 0.95925 1.04038 1.26596 1.40791 1.52129 1.53667 2.10743 2.24079 2.40614 2.79572 3.01493 3.22555 3.68329 3.87592 4.03071 4.10982 4.17829 4.30462 4.38523 4.39043 4.45629 4.46990 4.57685 4.59477 4.62342 4.64973 4.73330 4.76601 4.82641 4.88738 4.97790 4.99846 5.01480 5.02535 5.07384 5.09646 5.12418 5.25062 5.32150 5.35908 5.48026 5.68373 5.72227 5.92113 6.02754 6.05495 6.08392 6.09236 6.19299 6.42224 6.63732 6.67573 6.89020 6.94969 7.01990 8.41681 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.001942 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.325569 B =14414.378602 C =15018.878199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.572 5.572 4 C 0.115 3.885 5 C -0.124 4.124 6 C 0.061 3.939 7 N -0.561 5.561 8 C 0.024 3.976 9 C 0.021 3.979 10 C 0.512 3.488 11 O -0.543 6.543 12 C 0.494 3.506 13 O -0.502 6.502 14 N -0.634 5.634 15 C 0.153 3.847 16 C -0.222 4.222 17 C -0.099 4.099 18 C -0.177 4.177 19 C 0.095 3.905 20 C -0.502 4.502 21 H 0.076 0.924 22 C 0.032 3.968 23 N -0.838 5.838 24 Si 0.985 3.015 25 H -0.261 1.261 26 H -0.269 1.269 27 H -0.261 1.261 28 C -0.246 4.246 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.033 0.967 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.024 0.976 46 H 0.420 0.580 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.104 0.896 50 H 0.286 0.714 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 0.494 -24.674 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.022 4.022 3 N -0.304 5.304 4 C -0.007 4.007 5 C -0.163 4.163 6 C -0.067 4.067 7 N -0.285 5.285 8 C -0.124 4.124 9 C -0.127 4.127 10 C 0.294 3.706 11 O -0.421 6.421 12 C 0.276 3.724 13 O -0.377 6.377 14 N -0.279 5.279 15 C 0.060 3.940 16 C -0.243 4.243 17 C -0.117 4.117 18 C -0.196 4.196 19 C 0.092 3.908 20 C -0.532 4.532 21 H 0.094 0.906 22 C -0.181 4.181 23 N -0.465 5.465 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.194 1.194 27 H -0.186 1.186 28 C -0.267 4.267 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.042 0.958 46 H 0.257 0.743 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.122 0.878 50 H 0.096 0.904 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.308 -0.357 -24.540 25.110 hybrid contribution -0.159 1.693 1.102 2.026 sum 5.148 1.336 -23.438 24.034 Atomic orbital electron populations 1.22057 0.95187 1.02994 1.01180 1.22085 0.95300 0.79925 1.04899 1.47966 1.61564 1.15295 1.05589 1.21743 0.95903 0.98928 0.84128 1.21848 0.95147 1.02073 0.97185 1.22038 0.88729 0.98316 0.97639 1.61986 1.04122 1.58720 1.03702 1.22427 1.02385 0.98562 0.89025 1.22421 0.98125 0.96123 0.96026 1.19882 0.80088 0.85461 0.85191 1.90733 1.44560 1.20415 1.86381 1.20428 0.80381 0.86392 0.85167 1.90712 1.41998 1.19082 1.85924 1.43159 1.63020 1.17265 1.04478 1.17484 0.99190 0.92681 0.84631 1.20609 1.11967 0.93022 0.98729 1.20874 0.98859 0.99005 0.93007 1.21376 1.05849 0.94104 0.98312 1.17737 0.89109 0.92309 0.91661 1.19716 1.30571 1.11765 0.91161 0.90578 1.26705 0.93688 0.95221 1.02469 1.69840 1.27831 1.25686 1.23152 0.85201 0.79216 0.78929 0.76013 1.18511 1.19375 1.18587 1.20949 1.11337 0.98403 0.96042 0.94727 0.91612 0.90516 0.87206 0.89678 0.86462 0.90607 0.93609 0.90495 0.88639 0.94916 0.95546 0.90861 0.90249 0.92154 0.90616 0.95767 0.74300 0.86357 0.86534 0.87776 0.90354 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.62 71.98 0.69 -2.40 16 2 C 0.10 1.89 5.70 86.38 0.49 2.38 16 3 N -0.57 -12.39 2.49 -823.51 -2.05 -14.44 16 4 C 0.11 1.80 5.34 86.38 0.46 2.26 16 5 C -0.12 -1.97 5.46 30.59 0.17 -1.80 16 6 C 0.06 0.81 4.96 86.30 0.43 1.24 16 7 N -0.56 -8.39 5.02 -948.87 -4.76 -13.15 16 8 C 0.02 0.26 9.57 127.69 1.22 1.48 16 9 C 0.02 0.33 9.32 127.69 1.19 1.52 16 10 C 0.51 14.92 7.67 87.24 0.67 15.59 16 11 O -0.54 -17.62 16.12 -3.26 -0.05 -17.67 16 12 C 0.49 16.84 7.30 87.24 0.64 17.47 16 13 O -0.50 -17.97 8.85 -3.34 -0.03 -18.00 16 14 N -0.63 -23.58 5.33 -304.98 -1.63 -25.21 16 15 C 0.15 6.86 6.33 38.16 0.24 7.11 16 16 C -0.22 -10.14 8.68 22.59 0.20 -9.94 16 17 C -0.10 -4.68 10.02 22.20 0.22 -4.46 16 18 C -0.18 -9.37 8.63 22.76 0.20 -9.17 16 19 C 0.09 5.13 5.51 -21.31 -0.12 5.02 16 20 C -0.50 -27.09 9.05 23.46 0.21 -26.88 16 21 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 22 C 0.03 1.64 5.30 85.25 0.45 2.09 16 23 N -0.84 -44.24 10.93 21.82 0.24 -44.00 16 24 Si 0.99 38.63 29.56 68.60 2.03 40.66 16 25 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 26 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 27 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 28 C -0.25 -12.06 9.69 22.86 0.22 -11.83 16 29 H 0.03 0.93 6.36 -2.39 -0.02 0.91 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.11 1.34 8.02 -2.39 -0.02 1.33 16 33 H 0.09 2.06 5.83 -2.39 -0.01 2.04 16 34 H 0.12 1.08 8.07 -2.39 -0.02 1.07 16 35 H 0.08 1.38 7.50 -2.39 -0.02 1.36 16 36 H 0.05 0.98 6.55 -2.39 -0.02 0.97 16 37 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.10 0.90 8.06 -2.38 -0.02 0.88 16 39 H 0.03 0.47 8.12 -2.38 -0.02 0.45 16 40 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 42 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 43 H 0.06 1.08 6.47 -2.39 -0.02 1.07 16 44 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16 45 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.42 14.17 8.28 -92.71 -0.77 13.41 16 47 H 0.12 5.09 6.14 -2.91 -0.02 5.07 16 48 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 49 H 0.10 5.76 6.41 -2.91 -0.02 5.74 16 50 H 0.29 13.75 8.30 -92.70 -0.77 12.98 16 51 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -64.04 410.93 1.50 -62.54 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: 0.17 Total: 39.61 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 7.58 Total: -10.33 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -8.20 Total: -96.80 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.08 Total: -35.68 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -64.04 1.50 -62.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453739253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.195 kcal (2) G-P(sol) polarization free energy of solvation -64.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds