Wall clock time and date at job start Wed Apr 1 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.47107 * 2 1 4 4 C 1.46494 * 119.99599 * 269.99609 * 3 2 1 5 5 C 1.50697 * 109.47460 * 269.99968 * 4 3 2 6 6 H 1.07999 * 119.99932 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00390 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99733 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00394 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46906 * 60.00028 * 9 7 5 11 11 H 1.48497 * 109.47484 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47556 * 300.00314 * 9 7 5 13 13 C 1.34776 * 119.99854 * 89.99715 * 3 2 1 14 14 O 1.21283 * 119.99699 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00191 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46922 * 179.97438 * 15 13 3 17 17 C 1.46897 * 111.00417 * 293.95289 * 16 15 13 18 18 C 1.46896 * 110.99772 * 169.99950 * 16 15 13 19 19 C 1.50701 * 109.47468 * 190.00304 * 18 16 15 20 20 O 1.21281 * 119.99217 * 0.02562 * 19 18 16 21 21 N 1.34773 * 120.00138 * 179.97438 * 19 18 16 22 22 C 1.46497 * 119.99546 * 179.97438 * 21 19 18 23 23 C 1.50707 * 109.47012 * 180.02562 * 22 21 19 24 24 C 1.38238 * 119.99792 * 90.00154 * 23 22 21 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.98090 * 23 22 21 29 29 H 1.08993 * 109.46971 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47404 * 300.00457 * 1 2 3 31 31 H 1.08999 * 109.46729 * 59.99883 * 1 2 3 32 32 H 1.08994 * 109.47175 * 240.00046 * 2 1 3 33 33 H 1.08999 * 109.46830 * 119.99570 * 2 1 3 34 34 H 1.08999 * 109.47259 * 30.00786 * 4 3 2 35 35 H 1.09001 * 109.46648 * 150.00100 * 4 3 2 36 36 H 0.97005 * 119.99525 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46791 * 59.99747 * 15 13 3 38 38 H 1.09000 * 109.46921 * 299.99665 * 15 13 3 39 39 H 1.09000 * 109.46983 * 296.05485 * 17 16 15 40 40 H 1.09010 * 109.46534 * 56.04455 * 17 16 15 41 41 H 1.08994 * 109.47262 * 176.04845 * 17 16 15 42 42 H 1.09000 * 109.47305 * 69.99649 * 18 16 15 43 43 H 1.09004 * 109.47183 * 310.00195 * 18 16 15 44 44 H 0.96998 * 120.00430 * 0.02562 * 21 19 18 45 45 H 1.09005 * 109.47643 * 60.00506 * 22 21 19 46 46 H 1.09000 * 109.47513 * 299.99670 * 22 21 19 47 47 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 48 48 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 49 49 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 51 51 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8774 8 7 3.3497 3.1272 -3.6171 9 14 5.9139 2.0974 -3.4163 10 1 6.1418 0.6407 -3.5941 11 1 6.1614 2.7972 -4.7024 12 1 6.8411 2.6207 -2.3810 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9923 1.3060 2.4724 16 7 2.3109 2.2059 3.5889 17 6 3.7476 2.5097 3.6268 18 6 1.8587 1.6399 4.8667 19 6 1.9761 2.6830 5.9480 20 8 2.3949 3.7893 5.6802 21 7 1.6149 2.3869 7.2122 22 6 1.7296 3.4009 8.2633 23 6 1.2656 2.8202 9.5742 24 6 2.1684 2.1869 10.4078 25 6 1.7429 1.6547 11.6105 26 6 0.4147 1.7564 11.9800 27 6 -0.4891 2.3850 11.1441 28 6 -0.0627 2.9212 9.9434 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6761 3.5182 -4.4427 37 1 2.6228 0.4188 2.5299 38 1 0.9444 1.0115 2.5302 39 1 4.3074 1.5949 3.8213 40 1 4.0560 2.9275 2.6683 41 1 3.9455 3.2321 4.4186 42 1 2.4778 0.7800 5.1226 43 1 0.8190 1.3250 4.7770 44 1 1.2797 1.5022 7.4263 45 1 1.1111 4.2612 8.0074 46 1 2.7695 3.7149 8.3533 47 1 3.2062 2.1079 10.1193 48 1 2.4481 1.1596 12.2616 49 1 0.0824 1.3409 12.9199 50 1 -1.5276 2.4605 11.4307 51 1 -0.7679 3.4167 9.2925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561988117.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:18 Heat of formation + Delta-G solvation = -27.967896 kcal Electronic energy + Delta-G solvation = -29718.836382 eV Core-core repulsion = 25618.776823 eV Total energy + Delta-G solvation = -4100.059559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.25305 -39.53696 -38.95656 -36.38729 -35.16750 -34.94901 -32.75627 -31.90095 -31.37474 -30.07275 -29.22524 -28.13919 -26.56595 -26.06545 -23.44321 -23.04877 -22.93264 -21.94839 -21.54939 -20.50487 -18.35317 -17.62767 -16.95422 -16.66793 -16.35642 -16.09093 -15.96631 -15.56898 -15.49764 -15.26528 -14.93483 -14.41608 -14.15398 -14.08111 -13.88484 -13.73474 -13.35768 -13.31261 -13.11469 -12.97280 -12.83507 -12.59886 -12.37682 -11.96718 -11.83581 -11.63335 -11.53904 -11.49725 -11.30945 -11.20885 -11.08345 -10.87678 -10.66294 -10.47953 -10.07000 -9.97251 -9.59536 -9.41195 -9.28668 -9.27213 -8.77479 -8.38676 -8.08546 -7.57768 -5.99583 -4.04250 0.76459 0.92198 2.58320 2.84378 3.34230 3.39072 3.39197 3.41658 3.52708 3.80501 4.20767 4.30356 4.39124 4.49171 4.54001 4.64295 4.70173 4.90997 5.01480 5.01809 5.10448 5.18011 5.26367 5.28561 5.34365 5.35285 5.40646 5.51856 5.54326 5.57689 5.66863 5.77208 5.83965 5.91075 5.96480 6.03750 6.05093 6.12379 6.17297 6.25929 6.49993 6.50621 6.61365 6.95465 7.09726 7.19030 7.35616 7.52562 7.62875 7.97383 8.16278 8.29112 8.50974 8.95949 9.21569 9.60757 11.08297 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.001751 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.623020 B =15985.779519 C =16618.924024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.506 3.494 14 O -0.518 6.518 15 C 0.037 3.963 16 N -0.505 5.505 17 C 0.015 3.985 18 C 0.037 3.963 19 C 0.513 3.487 20 O -0.509 6.509 21 N -0.734 5.734 22 C 0.162 3.838 23 C -0.107 4.107 24 C -0.101 4.101 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.122 4.122 28 C -0.100 4.100 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.012 0.988 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.399 0.601 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.447 -9.467 29.732 32.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.393 6.393 15 C -0.094 4.094 16 N -0.229 5.229 17 C -0.132 4.132 18 C -0.094 4.094 19 C 0.299 3.701 20 O -0.382 6.382 21 N -0.389 5.389 22 C 0.039 3.961 23 C -0.107 4.107 24 C -0.120 4.120 25 C -0.141 4.141 26 C -0.133 4.133 27 C -0.140 4.140 28 C -0.119 4.119 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.030 0.970 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.233 0.767 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.142 0.858 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.158 -7.443 29.222 31.239 hybrid contribution 1.122 -1.527 -0.049 1.896 sum -7.036 -8.970 29.174 31.322 Atomic orbital electron populations 1.22229 0.96869 1.01266 1.02405 1.21393 0.93463 0.84416 1.02475 1.48253 1.64326 1.13128 1.07651 1.19233 0.96081 0.93713 0.78072 1.21399 0.96999 1.31857 1.06210 0.92633 1.24931 0.97755 0.94971 0.96443 1.69931 1.35672 1.33345 1.14377 0.86576 0.84957 0.78137 0.77824 1.20349 1.21204 1.20206 1.20040 0.79058 0.87124 0.84617 1.90668 1.44409 1.17628 1.86640 1.22120 1.02149 0.94130 0.91000 1.61301 1.19029 1.42848 0.99758 1.22730 0.84979 0.99471 1.06053 1.21975 1.02755 0.94683 0.90018 1.20620 0.77358 0.89504 0.82653 1.90735 1.43325 1.22881 1.81275 1.46048 1.68608 1.16220 1.07974 1.20146 1.01967 0.90910 0.83083 1.19927 0.94067 1.00337 0.96372 1.21147 0.99620 0.97047 0.94156 1.21191 0.96119 1.00009 0.96747 1.21241 0.93568 0.98831 0.99625 1.21198 0.99855 0.98429 0.94546 1.21159 0.95165 0.98896 0.96682 0.92290 0.93069 0.91992 0.90015 0.92034 0.95117 0.93860 0.92718 0.92497 0.88602 0.96994 0.88633 0.89939 0.92084 0.87946 0.76687 0.90528 0.90663 0.85786 0.85865 0.85982 0.85830 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.72 2.46 -175.06 -0.43 -13.15 16 4 C 0.25 6.56 5.16 -5.20 -0.03 6.54 16 5 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 C 0.51 10.76 7.37 -10.98 -0.08 10.67 16 14 O -0.52 -13.54 13.91 5.56 0.08 -13.46 16 15 C 0.04 0.57 4.00 -4.97 -0.02 0.55 16 16 N -0.51 -8.07 4.24 -245.82 -1.04 -9.11 16 17 C 0.01 0.26 8.85 60.06 0.53 0.79 16 18 C 0.04 0.41 5.45 -4.98 -0.03 0.38 16 19 C 0.51 6.26 7.55 -10.99 -0.08 6.18 16 20 O -0.51 -8.68 14.31 5.56 0.08 -8.60 16 21 N -0.73 -6.16 5.55 -61.47 -0.34 -6.50 16 22 C 0.16 1.35 5.80 -5.19 -0.03 1.31 16 23 C -0.11 -0.73 5.25 -104.62 -0.55 -1.28 16 24 C -0.10 -0.64 9.70 -39.58 -0.38 -1.03 16 25 C -0.12 -0.69 10.05 -39.58 -0.40 -1.09 16 26 C -0.11 -0.62 10.05 -39.58 -0.40 -1.02 16 27 C -0.12 -0.70 10.05 -39.58 -0.40 -1.09 16 28 C -0.10 -0.64 9.70 -39.58 -0.38 -1.03 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.06 0.76 7.38 -51.93 -0.38 0.38 16 38 H 0.10 1.20 6.98 -51.93 -0.36 0.84 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.10 2.00 5.82 -51.92 -0.30 1.70 16 41 H 0.08 1.45 5.88 -51.93 -0.31 1.15 16 42 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 43 H 0.10 0.87 7.93 -51.93 -0.41 0.45 16 44 H 0.40 2.32 8.46 -40.82 -0.35 1.97 16 45 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 46 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 47 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 48 H 0.12 0.48 8.06 -52.49 -0.42 0.06 16 49 H 0.12 0.43 8.06 -52.49 -0.42 0.01 16 50 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 51 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 419.41 15.07 6.32 6.32 Total: -1.00 -37.13 419.41 -10.16 -47.29 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.23 Total: 0.28 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -2.31 Total: 5.99 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -1.08 Total: -54.95 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.16 Total: -22.06 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -37.13 -10.16 -47.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561988117.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.325 kcal (2) G-P(sol) polarization free energy of solvation -37.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds