Wall clock time and date at job start Wed Apr 1 2020 05:31:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46507 * 109.47107 * 2 1
4 4 C 1.46494 * 119.99599 * 269.99609 * 3 2 1
5 5 C 1.50697 * 109.47460 * 269.99968 * 4 3 2
6 6 H 1.07999 * 119.99932 * 0.02562 * 5 4 3
7 7 C 1.37872 * 120.00390 * 180.02562 * 5 4 3
8 8 N 1.31524 * 119.99733 * 0.02562 * 7 5 4
9 9 Si 1.86792 * 120.00394 * 179.97438 * 7 5 4
10 10 H 1.48510 * 109.46906 * 60.00028 * 9 7 5
11 11 H 1.48497 * 109.47484 * 179.97438 * 9 7 5
12 12 H 1.48500 * 109.47556 * 300.00314 * 9 7 5
13 13 C 1.34776 * 119.99854 * 89.99715 * 3 2 1
14 14 O 1.21283 * 119.99699 * 179.97438 * 13 3 2
15 15 C 1.50704 * 120.00191 * 0.02562 * 13 3 2
16 16 N 1.46901 * 109.46922 * 179.97438 * 15 13 3
17 17 C 1.46897 * 111.00417 * 293.95289 * 16 15 13
18 18 C 1.46896 * 110.99772 * 169.99950 * 16 15 13
19 19 C 1.50701 * 109.47468 * 190.00304 * 18 16 15
20 20 O 1.21281 * 119.99217 * 0.02562 * 19 18 16
21 21 N 1.34773 * 120.00138 * 179.97438 * 19 18 16
22 22 C 1.46497 * 119.99546 * 179.97438 * 21 19 18
23 23 C 1.50707 * 109.47012 * 180.02562 * 22 21 19
24 24 C 1.38238 * 119.99792 * 90.00154 * 23 22 21
25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22
26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23
27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24
28 28 C 1.38234 * 120.00179 * 269.98090 * 23 22 21
29 29 H 1.08993 * 109.46971 * 179.97438 * 1 2 3
30 30 H 1.09004 * 109.47404 * 300.00457 * 1 2 3
31 31 H 1.08999 * 109.46729 * 59.99883 * 1 2 3
32 32 H 1.08994 * 109.47175 * 240.00046 * 2 1 3
33 33 H 1.08999 * 109.46830 * 119.99570 * 2 1 3
34 34 H 1.08999 * 109.47259 * 30.00786 * 4 3 2
35 35 H 1.09001 * 109.46648 * 150.00100 * 4 3 2
36 36 H 0.97005 * 119.99525 * 179.97438 * 8 7 5
37 37 H 1.09001 * 109.46791 * 59.99747 * 15 13 3
38 38 H 1.09000 * 109.46921 * 299.99665 * 15 13 3
39 39 H 1.09000 * 109.46983 * 296.05485 * 17 16 15
40 40 H 1.09010 * 109.46534 * 56.04455 * 17 16 15
41 41 H 1.08994 * 109.47262 * 176.04845 * 17 16 15
42 42 H 1.09000 * 109.47305 * 69.99649 * 18 16 15
43 43 H 1.09004 * 109.47183 * 310.00195 * 18 16 15
44 44 H 0.96998 * 120.00430 * 0.02562 * 21 19 18
45 45 H 1.09005 * 109.47643 * 60.00506 * 22 21 19
46 46 H 1.09000 * 109.47513 * 299.99670 * 22 21 19
47 47 H 1.08005 * 120.00068 * 359.97438 * 24 23 22
48 48 H 1.07999 * 119.99770 * 179.97438 * 25 24 23
49 49 H 1.08002 * 119.99744 * 180.02562 * 26 25 24
50 50 H 1.07998 * 120.00395 * 179.72811 * 27 26 25
51 51 H 1.07999 * 119.99968 * 359.97438 * 28 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3813 0.0000
4 6 2.2626 2.0717 -1.2687
5 6 3.6858 1.8350 -1.7037
6 1 4.3427 1.2302 -1.0961
7 6 4.1495 2.3903 -2.8774
8 7 3.3497 3.1272 -3.6171
9 14 5.9139 2.0974 -3.4163
10 1 6.1418 0.6407 -3.5941
11 1 6.1614 2.7972 -4.7024
12 1 6.8411 2.6207 -2.3810
13 6 2.2429 2.0166 1.1672
14 8 2.6477 3.1599 1.1672
15 6 1.9923 1.3060 2.4724
16 7 2.3109 2.2059 3.5889
17 6 3.7476 2.5097 3.6268
18 6 1.8587 1.6399 4.8667
19 6 1.9761 2.6830 5.9480
20 8 2.3949 3.7893 5.6802
21 7 1.6149 2.3869 7.2122
22 6 1.7296 3.4009 8.2633
23 6 1.2656 2.8202 9.5742
24 6 2.1684 2.1869 10.4078
25 6 1.7429 1.6547 11.6105
26 6 0.4147 1.7564 11.9800
27 6 -0.4891 2.3850 11.1441
28 6 -0.0627 2.9212 9.9434
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 1.5817 1.6877 -2.0283
35 1 2.0956 3.1410 -1.1384
36 1 3.6761 3.5182 -4.4427
37 1 2.6228 0.4188 2.5299
38 1 0.9444 1.0115 2.5302
39 1 4.3074 1.5949 3.8213
40 1 4.0560 2.9275 2.6683
41 1 3.9455 3.2321 4.4186
42 1 2.4778 0.7800 5.1226
43 1 0.8190 1.3250 4.7770
44 1 1.2797 1.5022 7.4263
45 1 1.1111 4.2612 8.0074
46 1 2.7695 3.7149 8.3533
47 1 3.2062 2.1079 10.1193
48 1 2.4481 1.1596 12.2616
49 1 0.0824 1.3409 12.9199
50 1 -1.5276 2.4605 11.4307
51 1 -0.7679 3.4167 9.2925
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000561988117.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:31:18
Heat of formation + Delta-G solvation = -27.967896 kcal
Electronic energy + Delta-G solvation = -29718.836382 eV
Core-core repulsion = 25618.776823 eV
Total energy + Delta-G solvation = -4100.059559 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.25305 -39.53696 -38.95656 -36.38729 -35.16750 -34.94901 -32.75627 -31.90095
-31.37474 -30.07275 -29.22524 -28.13919 -26.56595 -26.06545 -23.44321 -23.04877
-22.93264 -21.94839 -21.54939 -20.50487 -18.35317 -17.62767 -16.95422 -16.66793
-16.35642 -16.09093 -15.96631 -15.56898 -15.49764 -15.26528 -14.93483 -14.41608
-14.15398 -14.08111 -13.88484 -13.73474 -13.35768 -13.31261 -13.11469 -12.97280
-12.83507 -12.59886 -12.37682 -11.96718 -11.83581 -11.63335 -11.53904 -11.49725
-11.30945 -11.20885 -11.08345 -10.87678 -10.66294 -10.47953 -10.07000 -9.97251
-9.59536 -9.41195 -9.28668 -9.27213 -8.77479 -8.38676 -8.08546 -7.57768
-5.99583 -4.04250 0.76459 0.92198 2.58320 2.84378 3.34230 3.39072
3.39197 3.41658 3.52708 3.80501 4.20767 4.30356 4.39124 4.49171
4.54001 4.64295 4.70173 4.90997 5.01480 5.01809 5.10448 5.18011
5.26367 5.28561 5.34365 5.35285 5.40646 5.51856 5.54326 5.57689
5.66863 5.77208 5.83965 5.91075 5.96480 6.03750 6.05093 6.12379
6.17297 6.25929 6.49993 6.50621 6.61365 6.95465 7.09726 7.19030
7.35616 7.52562 7.62875 7.97383 8.16278 8.29112 8.50974 8.95949
9.21569 9.60757 11.08297
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.021589 B = 0.001751 C = 0.001684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.623020 B =15985.779519 C =16618.924024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.107 3.893
3 N -0.600 5.600
4 C 0.248 3.752
5 C -0.526 4.526
6 H 0.055 0.945
7 C 0.061 3.939
8 N -0.894 5.894
9 Si 0.897 3.103
10 H -0.278 1.278
11 H -0.286 1.286
12 H -0.277 1.277
13 C 0.506 3.494
14 O -0.518 6.518
15 C 0.037 3.963
16 N -0.505 5.505
17 C 0.015 3.985
18 C 0.037 3.963
19 C 0.513 3.487
20 O -0.509 6.509
21 N -0.734 5.734
22 C 0.162 3.838
23 C -0.107 4.107
24 C -0.101 4.101
25 C -0.123 4.123
26 C -0.114 4.114
27 C -0.122 4.122
28 C -0.100 4.100
29 H 0.058 0.942
30 H 0.050 0.950
31 H 0.061 0.939
32 H 0.081 0.919
33 H 0.061 0.939
34 H 0.031 0.969
35 H 0.043 0.957
36 H 0.263 0.737
37 H 0.057 0.943
38 H 0.096 0.904
39 H 0.012 0.988
40 H 0.095 0.905
41 H 0.082 0.918
42 H 0.061 0.939
43 H 0.102 0.898
44 H 0.399 0.601
45 H 0.076 0.924
46 H 0.075 0.925
47 H 0.124 0.876
48 H 0.123 0.877
49 H 0.122 0.878
50 H 0.124 0.876
51 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.447 -9.467 29.732 32.326
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.017 4.017
3 N -0.334 5.334
4 C 0.129 3.871
5 C -0.565 4.565
6 H 0.074 0.926
7 C -0.141 4.141
8 N -0.533 5.533
9 Si 0.725 3.275
10 H -0.203 1.203
11 H -0.212 1.212
12 H -0.202 1.202
13 C 0.292 3.708
14 O -0.393 6.393
15 C -0.094 4.094
16 N -0.229 5.229
17 C -0.132 4.132
18 C -0.094 4.094
19 C 0.299 3.701
20 O -0.382 6.382
21 N -0.389 5.389
22 C 0.039 3.961
23 C -0.107 4.107
24 C -0.120 4.120
25 C -0.141 4.141
26 C -0.133 4.133
27 C -0.140 4.140
28 C -0.119 4.119
29 H 0.077 0.923
30 H 0.069 0.931
31 H 0.080 0.920
32 H 0.100 0.900
33 H 0.080 0.920
34 H 0.049 0.951
35 H 0.061 0.939
36 H 0.073 0.927
37 H 0.075 0.925
38 H 0.114 0.886
39 H 0.030 0.970
40 H 0.114 0.886
41 H 0.101 0.899
42 H 0.079 0.921
43 H 0.121 0.879
44 H 0.233 0.767
45 H 0.095 0.905
46 H 0.093 0.907
47 H 0.142 0.858
48 H 0.141 0.859
49 H 0.140 0.860
50 H 0.142 0.858
51 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -8.158 -7.443 29.222 31.239
hybrid contribution 1.122 -1.527 -0.049 1.896
sum -7.036 -8.970 29.174 31.322
Atomic orbital electron populations
1.22229 0.96869 1.01266 1.02405 1.21393 0.93463 0.84416 1.02475
1.48253 1.64326 1.13128 1.07651 1.19233 0.96081 0.93713 0.78072
1.21399 0.96999 1.31857 1.06210 0.92633 1.24931 0.97755 0.94971
0.96443 1.69931 1.35672 1.33345 1.14377 0.86576 0.84957 0.78137
0.77824 1.20349 1.21204 1.20206 1.20040 0.79058 0.87124 0.84617
1.90668 1.44409 1.17628 1.86640 1.22120 1.02149 0.94130 0.91000
1.61301 1.19029 1.42848 0.99758 1.22730 0.84979 0.99471 1.06053
1.21975 1.02755 0.94683 0.90018 1.20620 0.77358 0.89504 0.82653
1.90735 1.43325 1.22881 1.81275 1.46048 1.68608 1.16220 1.07974
1.20146 1.01967 0.90910 0.83083 1.19927 0.94067 1.00337 0.96372
1.21147 0.99620 0.97047 0.94156 1.21191 0.96119 1.00009 0.96747
1.21241 0.93568 0.98831 0.99625 1.21198 0.99855 0.98429 0.94546
1.21159 0.95165 0.98896 0.96682 0.92290 0.93069 0.91992 0.90015
0.92034 0.95117 0.93860 0.92718 0.92497 0.88602 0.96994 0.88633
0.89939 0.92084 0.87946 0.76687 0.90528 0.90663 0.85786 0.85865
0.85982 0.85830 0.85700
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16
2 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16
3 N -0.60 -12.72 2.46 -175.06 -0.43 -13.15 16
4 C 0.25 6.56 5.16 -5.20 -0.03 6.54 16
5 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16
6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16
7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
8 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16
9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16
10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16
13 C 0.51 10.76 7.37 -10.98 -0.08 10.67 16
14 O -0.52 -13.54 13.91 5.56 0.08 -13.46 16
15 C 0.04 0.57 4.00 -4.97 -0.02 0.55 16
16 N -0.51 -8.07 4.24 -245.82 -1.04 -9.11 16
17 C 0.01 0.26 8.85 60.06 0.53 0.79 16
18 C 0.04 0.41 5.45 -4.98 -0.03 0.38 16
19 C 0.51 6.26 7.55 -10.99 -0.08 6.18 16
20 O -0.51 -8.68 14.31 5.56 0.08 -8.60 16
21 N -0.73 -6.16 5.55 -61.47 -0.34 -6.50 16
22 C 0.16 1.35 5.80 -5.19 -0.03 1.31 16
23 C -0.11 -0.73 5.25 -104.62 -0.55 -1.28 16
24 C -0.10 -0.64 9.70 -39.58 -0.38 -1.03 16
25 C -0.12 -0.69 10.05 -39.58 -0.40 -1.09 16
26 C -0.11 -0.62 10.05 -39.58 -0.40 -1.02 16
27 C -0.12 -0.70 10.05 -39.58 -0.40 -1.09 16
28 C -0.10 -0.64 9.70 -39.58 -0.38 -1.03 16
29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
30 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16
31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16
33 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16
34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16
35 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16
36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
37 H 0.06 0.76 7.38 -51.93 -0.38 0.38 16
38 H 0.10 1.20 6.98 -51.93 -0.36 0.84 16
39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16
40 H 0.10 2.00 5.82 -51.92 -0.30 1.70 16
41 H 0.08 1.45 5.88 -51.93 -0.31 1.15 16
42 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16
43 H 0.10 0.87 7.93 -51.93 -0.41 0.45 16
44 H 0.40 2.32 8.46 -40.82 -0.35 1.97 16
45 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16
46 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16
47 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16
48 H 0.12 0.48 8.06 -52.49 -0.42 0.06 16
49 H 0.12 0.43 8.06 -52.49 -0.42 0.01 16
50 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16
51 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16
LS Contribution 419.41 15.07 6.32 6.32
Total: -1.00 -37.13 419.41 -10.16 -47.29
By element:
Atomic # 1 Polarization: 8.51 SS G_CDS: -8.23 Total: 0.28 kcal
Atomic # 6 Polarization: 8.30 SS G_CDS: -2.31 Total: 5.99 kcal
Atomic # 7 Polarization: -53.87 SS G_CDS: -1.08 Total: -54.95 kcal
Atomic # 8 Polarization: -22.22 SS G_CDS: 0.16 Total: -22.06 kcal
Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal
Total LS contribution 6.32 Total: 6.32 kcal
Total: -37.13 -10.16 -47.29 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000561988117.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.325 kcal
(2) G-P(sol) polarization free energy of solvation -37.130 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.805 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.968 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds