Wall clock time and date at job start Wed Apr 1 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.47107 * 2 1 4 4 C 1.46494 * 119.99599 * 269.99609 * 3 2 1 5 5 C 1.50697 * 109.47460 * 269.99968 * 4 3 2 6 6 H 1.07999 * 119.99932 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00390 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99733 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00394 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46906 * 60.00028 * 9 7 5 11 11 H 1.48497 * 109.47484 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47556 * 300.00314 * 9 7 5 13 13 C 1.34776 * 119.99854 * 89.99715 * 3 2 1 14 14 O 1.21283 * 119.99699 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00191 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46922 * 179.97438 * 15 13 3 17 17 C 1.46897 * 111.00417 * 293.95289 * 16 15 13 18 18 C 1.46896 * 110.99772 * 169.99950 * 16 15 13 19 19 C 1.50701 * 109.47468 * 190.00304 * 18 16 15 20 20 O 1.21281 * 119.99217 * 0.02562 * 19 18 16 21 21 N 1.34773 * 120.00138 * 179.97438 * 19 18 16 22 22 C 1.46497 * 119.99546 * 179.97438 * 21 19 18 23 23 C 1.50707 * 109.47012 * 180.02562 * 22 21 19 24 24 C 1.38238 * 119.99792 * 90.00154 * 23 22 21 25 25 C 1.38235 * 119.99712 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.00220 * 359.97124 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.28719 * 26 25 24 28 28 C 1.38234 * 120.00179 * 269.98090 * 23 22 21 29 29 H 1.08993 * 109.46971 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47404 * 300.00457 * 1 2 3 31 31 H 1.08999 * 109.46729 * 59.99883 * 1 2 3 32 32 H 1.08994 * 109.47175 * 240.00046 * 2 1 3 33 33 H 1.08999 * 109.46830 * 119.99570 * 2 1 3 34 34 H 1.08999 * 109.47259 * 30.00786 * 4 3 2 35 35 H 1.09001 * 109.46648 * 150.00100 * 4 3 2 36 36 H 0.97005 * 119.99525 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46791 * 59.99747 * 15 13 3 38 38 H 1.09000 * 109.46921 * 299.99665 * 15 13 3 39 39 H 1.09000 * 109.46983 * 296.05485 * 17 16 15 40 40 H 1.09010 * 109.46534 * 56.04455 * 17 16 15 41 41 H 1.08994 * 109.47262 * 176.04845 * 17 16 15 42 42 H 1.09000 * 109.47305 * 69.99649 * 18 16 15 43 43 H 1.09004 * 109.47183 * 310.00195 * 18 16 15 44 44 H 0.96998 * 120.00430 * 0.02562 * 21 19 18 45 45 H 1.09005 * 109.47643 * 60.00506 * 22 21 19 46 46 H 1.09000 * 109.47513 * 299.99670 * 22 21 19 47 47 H 1.08005 * 120.00068 * 359.97438 * 24 23 22 48 48 H 1.07999 * 119.99770 * 179.97438 * 25 24 23 49 49 H 1.08002 * 119.99744 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 51 51 H 1.07999 * 119.99968 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8774 8 7 3.3497 3.1272 -3.6171 9 14 5.9139 2.0974 -3.4163 10 1 6.1418 0.6407 -3.5941 11 1 6.1614 2.7972 -4.7024 12 1 6.8411 2.6207 -2.3810 13 6 2.2429 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9923 1.3060 2.4724 16 7 2.3109 2.2059 3.5889 17 6 3.7476 2.5097 3.6268 18 6 1.8587 1.6399 4.8667 19 6 1.9761 2.6830 5.9480 20 8 2.3949 3.7893 5.6802 21 7 1.6149 2.3869 7.2122 22 6 1.7296 3.4009 8.2633 23 6 1.2656 2.8202 9.5742 24 6 2.1684 2.1869 10.4078 25 6 1.7429 1.6547 11.6105 26 6 0.4147 1.7564 11.9800 27 6 -0.4891 2.3850 11.1441 28 6 -0.0627 2.9212 9.9434 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6761 3.5182 -4.4427 37 1 2.6228 0.4188 2.5299 38 1 0.9444 1.0115 2.5302 39 1 4.3074 1.5949 3.8213 40 1 4.0560 2.9275 2.6683 41 1 3.9455 3.2321 4.4186 42 1 2.4778 0.7800 5.1226 43 1 0.8190 1.3250 4.7770 44 1 1.2797 1.5022 7.4263 45 1 1.1111 4.2612 8.0074 46 1 2.7695 3.7149 8.3533 47 1 3.2062 2.1079 10.1193 48 1 2.4481 1.1596 12.2616 49 1 0.0824 1.3409 12.9199 50 1 -1.5276 2.4605 11.4307 51 1 -0.7679 3.4167 9.2925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561988117.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:17 Heat of formation + Delta-G solvation = -54.737232 kcal Electronic energy + Delta-G solvation = -29719.997187 eV Core-core repulsion = 25618.776823 eV Total energy + Delta-G solvation = -4101.220365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18805 -40.63488 -39.93188 -37.61563 -36.69326 -35.88345 -34.88370 -32.53332 -31.79383 -31.61245 -30.43115 -29.34295 -28.29453 -26.86988 -25.15194 -24.24446 -23.47305 -23.27684 -22.18742 -21.40681 -19.85796 -18.65907 -18.40816 -17.91766 -17.67141 -17.08240 -16.93473 -16.81921 -16.52609 -16.23926 -15.95825 -15.81481 -15.40147 -15.26399 -15.00140 -14.60509 -14.36043 -14.29473 -14.27468 -13.86490 -13.75221 -13.71405 -13.51724 -13.44522 -13.26340 -13.11341 -12.84823 -12.63614 -12.58270 -12.53792 -12.39258 -12.11010 -11.99553 -11.91254 -11.79170 -11.69989 -11.00493 -10.63334 -10.43116 -10.11060 -9.82853 -9.75305 -9.36943 -9.21610 -8.20824 -6.35902 0.30264 0.49269 1.35246 1.40326 1.47287 1.68018 1.92652 2.01780 2.34422 2.47790 2.91711 3.08032 3.12069 3.66672 3.74595 3.87601 3.92993 4.13562 4.15628 4.19053 4.30604 4.32092 4.37167 4.38919 4.41079 4.49825 4.56907 4.60128 4.64428 4.71248 4.71868 4.78057 4.98231 5.03984 5.06580 5.09531 5.16047 5.19700 5.25403 5.43336 5.44757 5.55068 5.60703 5.62625 5.65273 5.86298 5.94178 5.99194 6.08402 6.09258 6.61222 6.72745 6.89034 7.30688 7.32879 7.60863 8.85696 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.001751 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.623020 B =15985.779519 C =16618.924024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.492 3.508 14 O -0.582 6.582 15 C 0.054 3.946 16 N -0.537 5.537 17 C 0.028 3.972 18 C 0.040 3.960 19 C 0.510 3.490 20 O -0.569 6.569 21 N -0.713 5.713 22 C 0.165 3.835 23 C -0.113 4.113 24 C -0.110 4.110 25 C -0.128 4.128 26 C -0.118 4.118 27 C -0.128 4.128 28 C -0.110 4.110 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.021 0.979 35 H -0.009 1.009 36 H 0.266 0.734 37 H 0.090 0.910 38 H 0.135 0.865 39 H 0.037 0.963 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.416 0.584 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.128 0.872 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.140 0.860 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.038 -13.286 32.273 36.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.281 3.719 14 O -0.462 6.462 15 C -0.076 4.076 16 N -0.262 5.262 17 C -0.120 4.120 18 C -0.090 4.090 19 C 0.296 3.704 20 O -0.447 6.447 21 N -0.367 5.367 22 C 0.042 3.958 23 C -0.113 4.113 24 C -0.128 4.128 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.146 4.146 28 C -0.128 4.128 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.039 0.961 35 H 0.009 0.991 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.153 0.847 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.156 0.844 44 H 0.253 0.747 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.146 0.854 48 H 0.158 0.842 49 H 0.160 0.840 50 H 0.158 0.842 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.799 -11.364 31.816 34.911 hybrid contribution 1.234 -0.333 -0.741 1.477 sum -7.565 -11.697 31.074 34.054 Atomic orbital electron populations 1.22163 0.94564 1.03509 1.01681 1.21767 0.95328 0.81210 1.03977 1.48287 1.64354 1.15163 1.05982 1.18631 0.95157 0.91336 0.80613 1.21695 0.97952 1.31915 1.06438 0.92822 1.25884 1.02402 0.94534 0.96523 1.70063 1.37813 1.34172 1.14819 0.85475 0.79003 0.79096 0.77262 1.18203 1.20403 1.20552 1.21273 0.77469 0.86711 0.86486 1.90646 1.47092 1.20738 1.87720 1.22046 1.05001 0.93604 0.86942 1.61086 1.18055 1.44857 1.02205 1.22427 0.86746 1.00082 1.02750 1.22117 1.05265 0.94681 0.86927 1.21008 0.76517 0.89001 0.83824 1.90727 1.46295 1.25326 1.82317 1.45877 1.66997 1.16921 1.06883 1.20060 1.01122 0.90723 0.83905 1.19777 0.94547 1.01228 0.95774 1.21273 0.99812 0.97188 0.94535 1.21450 0.96745 0.99773 0.96613 1.21556 0.93438 0.98269 1.00292 1.21451 1.00899 0.98034 0.94178 1.21279 0.95037 0.99199 0.97313 0.88437 0.91842 0.94736 0.91217 0.87795 0.96126 0.99111 0.92507 0.89258 0.84702 0.94454 0.93425 0.91223 0.88457 0.84433 0.74744 0.91856 0.91740 0.85356 0.84167 0.83987 0.84179 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.02 16 2 C 0.10 2.90 5.93 86.38 0.51 3.41 16 3 N -0.61 -25.91 2.46 -826.16 -2.03 -27.94 16 4 C 0.26 14.73 5.16 85.63 0.44 15.17 16 5 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 9 Si 0.97 46.08 29.54 68.60 2.03 48.10 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 13 C 0.49 21.09 7.37 87.66 0.65 21.74 16 14 O -0.58 -32.27 13.91 -3.04 -0.04 -32.31 16 15 C 0.05 1.49 4.00 85.56 0.34 1.83 16 16 N -0.54 -16.27 4.24 -931.64 -3.95 -20.22 16 17 C 0.03 0.96 8.85 127.69 1.13 2.09 16 18 C 0.04 0.74 5.45 85.56 0.47 1.20 16 19 C 0.51 11.79 7.55 87.66 0.66 12.45 16 20 O -0.57 -19.92 14.31 -3.03 -0.04 -19.97 16 21 N -0.71 -10.80 5.55 -466.78 -2.59 -13.38 16 22 C 0.17 2.71 5.80 85.64 0.50 3.21 16 23 C -0.11 -1.43 5.25 -19.86 -0.10 -1.54 16 24 C -0.11 -1.23 9.70 22.27 0.22 -1.02 16 25 C -0.13 -1.17 10.05 22.27 0.22 -0.95 16 26 C -0.12 -0.99 10.05 22.27 0.22 -0.76 16 27 C -0.13 -1.19 10.05 22.27 0.22 -0.96 16 28 C -0.11 -1.26 9.70 22.27 0.22 -1.04 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 33 H 0.10 2.17 6.44 -2.39 -0.02 2.15 16 34 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 35 H -0.01 -0.61 7.42 -2.39 -0.02 -0.62 16 36 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 37 H 0.09 1.93 7.38 -2.39 -0.02 1.91 16 38 H 0.14 2.67 6.98 -2.39 -0.02 2.65 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 2.10 5.82 -2.38 -0.01 2.09 16 41 H 0.07 2.56 5.88 -2.39 -0.01 2.54 16 42 H 0.10 1.16 8.12 -2.39 -0.02 1.14 16 43 H 0.14 1.57 7.93 -2.38 -0.02 1.56 16 44 H 0.42 3.60 8.46 -92.71 -0.78 2.82 16 45 H 0.06 1.21 8.09 -2.38 -0.02 1.19 16 46 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 47 H 0.13 1.26 8.06 -2.91 -0.02 1.23 16 48 H 0.14 0.74 8.06 -2.91 -0.02 0.72 16 49 H 0.14 0.58 8.06 -2.91 -0.02 0.55 16 50 H 0.14 0.77 8.06 -2.91 -0.02 0.74 16 51 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -89.72 419.41 0.93 -88.78 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.14 Total: 13.71 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 7.14 Total: 20.81 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -8.28 Total: -119.13 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.09 Total: -52.28 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -89.72 0.93 -88.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561988117.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.046 kcal (2) G-P(sol) polarization free energy of solvation -89.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds