Wall clock time and date at job start Wed Apr 1 2020 05:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47366 * 2 1 4 4 C 1.46503 * 119.99953 * 275.92127 * 3 2 1 5 5 C 1.50702 * 109.47448 * 278.41071 * 4 3 2 6 6 H 1.08006 * 119.99571 * 5.12171 * 5 4 3 7 7 C 1.37873 * 120.00027 * 185.12564 * 5 4 3 8 8 N 1.31508 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99611 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47471 * 89.99803 * 9 7 5 11 11 H 1.48504 * 109.46924 * 209.99501 * 9 7 5 12 12 H 1.48498 * 109.47453 * 329.99494 * 9 7 5 13 13 S 1.65599 * 120.00139 * 95.92325 * 3 2 1 14 14 O 1.42098 * 106.40467 * 197.25409 * 13 3 2 15 15 O 1.42099 * 106.40058 * 330.17902 * 13 3 2 16 16 N 1.65602 * 107.21924 * 83.71924 * 13 3 2 17 17 C 1.46504 * 120.00219 * 65.53194 * 16 13 3 18 18 C 1.52998 * 109.46934 * 162.76936 * 17 16 13 19 19 H 1.08996 * 110.64647 * 56.70062 * 18 17 16 20 20 C 1.54593 * 110.72331 * 293.54447 * 18 17 16 21 21 C 1.53999 * 105.13952 * 219.68904 * 20 18 17 22 22 N 1.47895 * 107.05829 * 358.77562 * 21 20 18 23 23 C 1.46903 * 111.00169 * 145.84710 * 22 21 20 24 24 C 1.53001 * 109.46895 * 62.66362 * 23 22 21 25 25 C 1.52997 * 109.47408 * 182.66861 * 23 22 21 26 26 C 1.53003 * 109.46716 * 302.66375 * 23 22 21 27 27 C 1.48536 * 105.82233 * 25.32856 * 22 21 20 28 28 H 1.09004 * 109.46791 * 65.00115 * 1 2 3 29 29 H 1.09000 * 109.47596 * 185.00573 * 1 2 3 30 30 H 1.09004 * 109.46716 * 305.00699 * 1 2 3 31 31 H 1.09006 * 109.46903 * 239.99765 * 2 1 3 32 32 H 1.08999 * 109.46786 * 120.00516 * 2 1 3 33 33 H 1.08997 * 109.47116 * 38.41353 * 4 3 2 34 34 H 1.09003 * 109.47072 * 158.41318 * 4 3 2 35 35 H 0.97007 * 119.99959 * 180.02562 * 8 7 5 36 36 H 0.97007 * 120.00059 * 245.53861 * 16 13 3 37 37 H 1.08999 * 109.46837 * 282.76800 * 17 16 13 38 38 H 1.09001 * 109.46741 * 42.76829 * 17 16 13 39 39 H 1.09001 * 110.30859 * 338.60305 * 20 18 17 40 40 H 1.09001 * 110.30530 * 100.77440 * 20 18 17 41 41 H 1.08994 * 109.91983 * 118.13250 * 21 20 18 42 42 H 1.09005 * 109.91680 * 239.22785 * 21 20 18 43 43 H 1.08998 * 109.46778 * 60.00638 * 24 23 22 44 44 H 1.09002 * 109.46237 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47378 * 300.00095 * 24 23 22 46 46 H 1.09003 * 109.47419 * 59.99489 * 25 23 22 47 47 H 1.09000 * 109.47301 * 179.97438 * 25 23 22 48 48 H 1.09007 * 109.47119 * 300.00088 * 25 23 22 49 49 H 1.09002 * 109.46866 * 66.16165 * 26 23 22 50 50 H 1.08997 * 109.46812 * 186.15299 * 26 23 22 51 51 H 1.08996 * 109.47632 * 306.15785 * 26 23 22 52 52 H 1.08995 * 110.66897 * 202.35380 * 27 22 21 53 53 H 1.09006 * 110.66293 * 79.22922 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1392 2.1153 -1.2620 5 6 3.4285 1.7350 -1.9431 6 1 4.0516 0.9583 -1.5247 7 6 3.8128 2.3785 -3.1004 8 7 3.0539 3.3238 -3.6101 9 14 5.4107 1.9064 -3.9449 10 1 5.1501 0.8243 -4.9280 11 1 5.9675 3.0901 -4.6478 12 1 6.3847 1.4296 -2.9305 13 16 2.4339 2.1124 1.4265 14 8 2.4680 3.5090 1.1664 15 8 1.6150 1.5284 2.4302 16 7 3.9899 1.6633 1.7725 17 6 5.0871 2.0925 0.9019 18 6 6.4173 1.9301 1.6401 19 1 6.5495 0.9003 1.9718 20 6 6.5016 2.9054 2.8366 21 6 7.9556 3.4126 2.8405 22 7 8.6545 2.7347 1.7272 23 6 9.6610 3.6173 1.1221 24 6 10.7291 3.9611 2.1622 25 6 10.3147 2.9071 -0.0649 26 6 8.9871 4.9032 0.6389 27 6 7.5997 2.3777 0.7443 28 1 -0.3633 0.4343 -0.9314 29 1 -0.3634 -1.0237 0.0897 30 1 -0.3633 0.5896 0.8418 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.2987 1.8656 -1.9095 34 1 2.1369 3.1866 -1.0607 35 1 3.3241 3.7763 -4.4245 36 1 4.1748 1.1159 2.5518 37 1 5.0953 1.4811 -0.0005 38 1 4.9475 3.1390 0.6305 39 1 5.8112 3.7372 2.6960 40 1 6.2808 2.3825 3.7671 41 1 7.9730 4.4917 2.6876 42 1 8.4330 3.1644 3.7885 43 1 11.2092 3.0450 2.5064 44 1 11.4756 4.6164 1.7132 45 1 10.2634 4.4671 3.0078 46 1 9.5536 2.6621 -0.8058 47 1 11.0611 3.5622 -0.5141 48 1 10.7947 1.9909 0.2793 49 1 8.6165 5.4638 1.4971 50 1 9.7103 5.5096 0.0937 51 1 8.1544 4.6523 -0.0182 52 1 7.9302 1.5586 0.1058 53 1 7.3220 3.2454 0.1459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594793951.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:38 Heat of formation + Delta-G solvation = -102.395934 kcal Electronic energy + Delta-G solvation = -31348.906491 eV Core-core repulsion = 27381.063441 eV Total energy + Delta-G solvation = -3967.843050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.92119 -38.31849 -37.69641 -37.39584 -36.86928 -34.90790 -34.64953 -31.49556 -30.77055 -30.26199 -28.48803 -28.31916 -27.95335 -25.50225 -24.93332 -23.29040 -23.00068 -21.27235 -20.25456 -19.59579 -18.67036 -18.58948 -18.20552 -17.41660 -17.00025 -16.92555 -16.54898 -15.94682 -15.46759 -15.22712 -15.07126 -14.94105 -14.85374 -14.67211 -14.55638 -14.00634 -13.77454 -13.70311 -13.60714 -13.35940 -13.25969 -13.11711 -13.00176 -12.95976 -12.95233 -12.70106 -12.67515 -12.60266 -12.46598 -12.28899 -12.19545 -12.13810 -12.00852 -11.85476 -11.81301 -11.68683 -11.56362 -11.53137 -11.28278 -10.55681 -10.33048 -9.76302 -9.28821 -8.13648 -6.26519 -0.26070 1.43847 1.45297 1.54429 2.02919 2.44160 2.63649 2.97694 3.19084 3.46751 3.66232 3.68150 3.87205 3.98110 4.00110 4.04548 4.24402 4.30952 4.37786 4.44362 4.46984 4.52193 4.57552 4.64140 4.68582 4.72191 4.73129 4.83129 4.87337 4.93497 4.94423 4.96770 5.00654 5.01275 5.03464 5.14248 5.18175 5.21523 5.23864 5.30438 5.31375 5.43228 5.43375 5.46670 5.55703 5.80607 5.93908 5.96967 6.14603 6.18940 6.27978 6.85636 7.43262 8.94696 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.004341 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.471886 B = 6449.290040 C = 8407.165506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.259 3.741 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.014 3.986 8 N -0.930 5.930 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.249 1.249 13 S 2.799 3.201 14 O -1.020 7.020 15 O -1.007 7.007 16 N -1.110 6.110 17 C 0.133 3.867 18 C -0.087 4.087 19 H 0.104 0.896 20 C -0.128 4.128 21 C 0.031 3.969 22 N -0.504 5.504 23 C 0.088 3.912 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.187 4.187 27 C 0.034 3.966 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.016 0.984 34 H 0.019 0.981 35 H 0.263 0.737 36 H 0.423 0.577 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.061 0.939 50 H 0.071 0.929 51 H 0.045 0.955 52 H 0.084 0.916 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.644 -4.423 11.282 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.135 3.865 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.186 4.186 8 N -0.570 5.570 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.173 1.173 13 S 2.807 3.193 14 O -1.003 7.003 15 O -0.991 6.991 16 N -0.872 5.872 17 C 0.006 3.994 18 C -0.107 4.107 19 H 0.122 0.878 20 C -0.166 4.166 21 C -0.096 4.096 22 N -0.228 5.228 23 C -0.002 4.002 24 C -0.187 4.187 25 C -0.196 4.196 26 C -0.246 4.246 27 C -0.094 4.094 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.259 0.741 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.090 0.910 51 H 0.064 0.936 52 H 0.102 0.898 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.328 -4.062 11.691 17.469 hybrid contribution 0.083 0.626 -1.267 1.416 sum 12.411 -3.436 10.424 16.568 Atomic orbital electron populations 1.22193 0.96095 1.03109 1.01281 1.21244 0.94539 0.81226 1.03329 1.57626 1.79181 1.24013 1.22898 1.18740 0.96613 0.90896 0.80259 1.21820 1.06471 1.20157 1.08792 0.90337 1.25755 1.00179 0.94692 0.97954 1.70076 1.39687 1.25380 1.21810 0.85704 0.80313 0.77517 0.79220 1.20233 1.21778 1.17279 1.01139 0.73209 0.72785 0.72198 1.93526 1.87307 1.33693 1.85793 1.93532 1.67158 1.79403 1.58959 1.55502 1.23813 1.69351 1.38583 1.21280 0.85738 0.99498 0.92844 1.22217 0.91800 1.01398 0.95296 0.87783 1.22504 0.96256 0.98770 0.99037 1.22963 0.93225 0.97521 0.95913 1.65065 1.11521 1.38607 1.07600 1.21310 0.92931 0.90653 0.95317 1.21780 0.97397 1.01838 0.97709 1.21861 1.00342 1.01018 0.96378 1.22565 1.01427 0.98970 1.01605 1.23265 0.90934 1.00227 0.94996 0.93424 0.89103 0.93620 0.90002 0.89535 0.96609 0.96294 0.92791 0.74134 0.90936 0.93097 0.92662 0.89324 0.93179 0.89225 0.91760 0.91241 0.92551 0.93798 0.91100 0.91558 0.92032 0.90982 0.93608 0.89807 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.09 10.23 71.98 0.74 -4.35 16 2 C 0.12 3.98 6.05 86.38 0.52 4.50 16 3 N -1.00 -40.07 2.83 -519.85 -1.47 -41.55 16 4 C 0.26 12.85 5.44 85.63 0.47 13.31 16 5 C -0.53 -26.66 8.56 25.60 0.22 -26.44 16 6 H 0.08 3.63 6.37 -2.91 -0.02 3.61 16 7 C 0.01 0.71 5.46 84.65 0.46 1.18 16 8 N -0.93 -53.41 13.29 21.44 0.28 -53.13 16 9 Si 0.95 40.63 29.54 68.60 2.03 42.66 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 13 S 2.80 108.93 6.07 -56.49 -0.34 108.58 16 14 O -1.02 -48.70 15.98 -128.00 -2.05 -50.74 16 15 O -1.01 -39.56 17.26 -128.00 -2.21 -41.77 16 16 N -1.11 -33.51 5.85 -187.48 -1.10 -34.60 16 17 C 0.13 4.24 5.45 86.38 0.47 4.71 16 18 C -0.09 -2.13 3.14 -9.59 -0.03 -2.16 16 19 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 20 C -0.13 -2.87 6.33 31.47 0.20 -2.67 16 21 C 0.03 0.65 5.22 86.45 0.45 1.10 16 22 N -0.50 -11.12 5.09 -833.65 -4.24 -15.37 16 23 C 0.09 1.74 0.70 3.53 0.00 1.75 16 24 C -0.13 -2.06 8.42 71.98 0.61 -1.46 16 25 C -0.14 -2.68 8.33 71.98 0.60 -2.08 16 26 C -0.19 -4.03 7.83 71.98 0.56 -3.47 16 27 C 0.03 0.88 4.69 86.65 0.41 1.29 16 28 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 31 H 0.08 2.64 8.12 -2.38 -0.02 2.62 16 32 H 0.09 2.37 7.75 -2.39 -0.02 2.35 16 33 H 0.02 0.83 8.13 -2.39 -0.02 0.81 16 34 H 0.02 1.08 6.80 -2.39 -0.02 1.06 16 35 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 36 H 0.42 9.83 8.67 -96.74 -0.84 8.99 16 37 H 0.07 2.51 5.90 -2.39 -0.01 2.50 16 38 H 0.05 1.92 7.63 -2.39 -0.02 1.91 16 39 H 0.05 1.44 7.80 -2.39 -0.02 1.43 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 1.05 5.36 -2.39 -0.01 1.04 16 42 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 0.87 7.22 -2.39 -0.02 0.86 16 46 H 0.04 0.97 6.93 -2.39 -0.02 0.95 16 47 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 48 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 49 H 0.06 1.29 6.16 -2.39 -0.01 1.27 16 50 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.04 1.18 5.82 -2.39 -0.01 1.17 16 52 H 0.08 2.14 7.66 -2.39 -0.02 2.12 16 53 H 0.04 1.25 5.52 -2.38 -0.01 1.23 16 Total: -1.00 -65.71 412.73 -3.38 -69.09 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.05 Total: 31.63 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 5.68 Total: -14.81 kcal Atomic # 7 Polarization: -138.11 SS G_CDS: -6.53 Total: -144.64 kcal Atomic # 8 Polarization: -88.26 SS G_CDS: -4.25 Total: -92.51 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 16 Polarization: 108.93 SS G_CDS: -0.34 Total: 108.58 kcal Total: -65.71 -3.38 -69.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594793951.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.306 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds