Wall clock time and date at job start Wed Apr 1 2020 05:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47325 * 2 1 4 4 C 1.46493 * 120.00444 * 270.27624 * 3 2 1 5 5 C 1.53000 * 109.47637 * 269.72749 * 4 3 2 6 6 C 1.50697 * 109.47306 * 180.02562 * 5 4 3 7 7 O 1.21276 * 120.00431 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99638 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99575 * 180.02562 * 8 6 5 10 10 C 1.34784 * 119.99635 * 90.00335 * 3 2 1 11 11 O 1.21588 * 119.99858 * 180.02562 * 10 3 2 12 12 N 1.34777 * 119.99964 * 0.02562 * 10 3 2 13 13 C 1.46496 * 119.99614 * 180.02562 * 12 10 3 14 14 H 1.08999 * 109.47513 * 34.99437 * 13 12 10 15 15 C 1.53005 * 109.46999 * 154.99671 * 13 12 10 16 16 C 1.50695 * 109.46978 * 294.99563 * 15 13 12 17 17 H 1.08001 * 120.00091 * 0.02562 * 16 15 13 18 18 C 1.37875 * 119.99897 * 179.97438 * 16 15 13 19 19 N 1.31515 * 120.00152 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00214 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46864 * 90.00167 * 20 18 16 22 22 H 1.48503 * 109.47159 * 210.00312 * 20 18 16 23 23 H 1.48498 * 109.46948 * 330.00090 * 20 18 16 24 24 C 1.50698 * 109.47133 * 274.99546 * 13 12 10 25 25 C 1.38236 * 119.99733 * 319.73012 * 24 13 12 26 26 C 1.38236 * 119.99905 * 179.78750 * 25 24 13 27 27 C 1.38235 * 120.00221 * 0.44254 * 26 25 24 28 28 C 1.38245 * 119.99811 * 359.81002 * 27 26 25 29 29 C 1.38231 * 120.00269 * 140.00231 * 24 13 12 30 30 H 1.08998 * 109.46465 * 299.99693 * 1 2 3 31 31 H 1.08993 * 109.47021 * 59.99589 * 1 2 3 32 32 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46903 * 240.00151 * 2 1 3 34 34 H 1.09004 * 109.47175 * 120.00822 * 2 1 3 35 35 H 1.09002 * 109.47192 * 29.72648 * 4 3 2 36 36 H 1.08996 * 109.47342 * 149.72358 * 4 3 2 37 37 H 1.09002 * 109.46747 * 300.00171 * 5 4 3 38 38 H 1.08996 * 109.47074 * 59.99445 * 5 4 3 39 39 H 0.96997 * 120.00204 * 359.97438 * 8 6 5 40 40 H 1.09000 * 109.46904 * 179.97438 * 9 8 6 41 41 H 1.09003 * 109.46716 * 299.99106 * 9 8 6 42 42 H 1.08996 * 109.47704 * 59.99196 * 9 8 6 43 43 H 0.96996 * 119.99887 * 359.97438 * 12 10 3 44 44 H 1.09001 * 109.47071 * 54.99707 * 15 13 12 45 45 H 1.09000 * 109.46960 * 174.99671 * 15 13 12 46 46 H 0.97001 * 120.00571 * 179.97438 * 19 18 16 47 47 H 1.08004 * 120.00443 * 359.97438 * 25 24 13 48 48 H 1.08002 * 120.00624 * 180.27464 * 26 25 24 49 49 H 1.07994 * 120.00724 * 179.83443 * 27 26 25 50 50 H 1.07994 * 119.99799 * 179.97438 * 28 27 26 51 51 H 1.08004 * 119.99949 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2568 2.0738 -1.2686 5 6 3.7018 1.8398 -1.7139 6 6 3.9472 2.5529 -3.0186 7 8 3.0542 3.1857 -3.5412 8 7 5.1588 2.4867 -3.6052 9 6 5.3975 3.1804 -4.8733 10 6 2.2431 2.0164 1.1673 11 8 2.6480 3.1629 1.1674 12 7 2.0190 1.3808 2.3345 13 6 2.2627 2.0715 3.6032 14 1 2.0098 3.1265 3.4970 15 6 1.3959 1.4471 4.6985 16 6 -0.0586 1.6879 4.3865 17 1 -0.3370 2.2316 3.4959 18 6 -1.0339 1.2133 5.2376 19 7 -0.6949 0.5508 6.3220 20 14 -2.8370 1.5112 4.8506 21 1 -3.3586 0.3899 4.0285 22 1 -3.6076 1.5967 6.1171 23 1 -2.9781 2.7838 4.0985 24 6 3.7167 1.9386 3.9763 25 6 4.3754 0.7403 3.7737 26 6 5.7103 0.6197 4.1118 27 6 6.3841 1.6945 4.6610 28 6 5.7240 2.8913 4.8684 29 6 4.3902 3.0132 4.5262 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 1.5759 1.6876 -2.0271 36 1 2.0857 3.1422 -1.1370 37 1 4.3827 2.2260 -0.9554 38 1 3.8729 0.7714 -1.8455 39 1 5.8729 1.9803 -3.1875 40 1 6.4269 3.0136 -5.1905 41 1 4.7162 2.7952 -5.6320 42 1 5.2271 4.2488 -4.7407 43 1 1.6956 0.4663 2.3344 44 1 1.5850 0.3746 4.7442 45 1 1.6415 1.9005 5.6588 46 1 -1.3811 0.2172 6.9210 47 1 3.8480 -0.1008 3.3484 48 1 6.2263 -0.3151 3.9495 49 1 7.4263 1.5995 4.9277 50 1 6.2503 3.7309 5.2979 51 1 3.8745 3.9482 4.6882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893778786.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:54 Heat of formation + Delta-G solvation = -47.530225 kcal Electronic energy + Delta-G solvation = -31272.983074 eV Core-core repulsion = 27172.075229 eV Total energy + Delta-G solvation = -4100.907845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.22304 -39.62703 -38.67342 -36.05391 -35.08620 -34.80160 -32.89376 -32.23677 -30.82189 -30.41509 -29.62747 -28.70591 -27.01227 -24.96940 -23.69208 -23.09532 -22.25183 -21.91658 -20.68326 -20.00321 -19.21774 -17.80896 -17.50897 -16.75388 -16.21186 -16.11484 -15.89657 -15.77283 -15.01382 -14.79452 -14.55919 -14.50885 -14.07574 -13.84136 -13.79525 -13.40265 -13.26077 -13.09587 -12.95592 -12.64619 -12.61401 -12.54374 -12.35339 -12.09305 -12.08999 -11.75885 -11.49907 -11.14451 -11.06370 -10.98221 -10.89232 -10.71351 -10.58851 -10.40070 -10.10069 -9.74722 -9.57727 -9.38770 -9.27021 -8.63835 -8.51169 -8.44333 -8.21448 -8.13494 -6.07522 -4.10364 1.80291 1.82403 2.48737 2.80999 3.21721 3.27596 3.35450 3.40339 3.71160 4.19032 4.40456 4.45804 4.64615 4.87813 4.97655 4.98705 5.06004 5.21437 5.27444 5.28884 5.29170 5.34787 5.38864 5.43217 5.44839 5.50620 5.57471 5.76456 5.87354 5.92631 5.93665 5.97065 6.06311 6.16291 6.19704 6.38127 6.40991 6.44499 6.61840 6.74367 6.86206 6.87817 7.00167 7.14271 7.20622 7.30600 7.42922 7.53222 7.69498 7.89864 8.02201 8.28246 8.49181 8.95777 9.12803 9.54541 11.03014 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008376 B = 0.003585 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.922685 B = 7808.995746 C =10289.155168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.109 3.891 3 N -0.634 5.634 4 C 0.153 3.847 5 C -0.157 4.157 6 C 0.518 3.482 7 O -0.539 6.539 8 N -0.740 5.740 9 C 0.087 3.913 10 C 0.705 3.295 11 O -0.594 6.594 12 N -0.715 5.715 13 C 0.200 3.800 14 H 0.086 0.914 15 C 0.024 3.976 16 C -0.517 4.517 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.069 4.069 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.136 4.136 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.402 0.598 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.396 0.604 44 H 0.023 0.977 45 H 0.034 0.966 46 H 0.261 0.739 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.115 0.885 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.059 -3.315 -15.136 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.014 4.014 3 N -0.372 5.372 4 C 0.029 3.971 5 C -0.198 4.198 6 C 0.305 3.695 7 O -0.415 6.415 8 N -0.393 5.393 9 C -0.057 4.057 10 C 0.406 3.594 11 O -0.472 6.472 12 N -0.368 5.368 13 C 0.095 3.905 14 H 0.104 0.896 15 C -0.013 4.013 16 C -0.555 4.555 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.070 4.070 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.154 4.154 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.236 0.764 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.232 0.768 44 H 0.041 0.959 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.132 0.868 48 H 0.131 0.869 49 H 0.130 0.870 50 H 0.133 0.867 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.600 -2.089 -15.336 20.604 hybrid contribution -0.741 -0.715 0.088 1.033 sum 12.859 -2.804 -15.248 20.143 Atomic orbital electron populations 1.22259 0.95656 1.02313 1.03349 1.21449 0.94846 0.82666 1.02466 1.47169 1.70879 1.14275 1.04863 1.20858 0.92926 0.99470 0.83846 1.22085 1.01528 1.01406 0.94813 1.20708 0.81939 0.80587 0.86287 1.90715 1.43417 1.42082 1.65286 1.45859 1.13808 1.54572 1.25019 1.21519 1.01153 0.97651 0.85386 1.15965 0.78453 0.84451 0.80482 1.90875 1.53426 1.16684 1.86253 1.45285 1.70003 1.17479 1.04054 1.20126 0.88923 0.98199 0.83257 0.89585 1.19388 0.93471 0.96237 0.92195 1.21130 0.90558 1.35566 1.08231 0.92368 1.24973 0.98989 0.95146 0.94982 1.69956 1.33365 1.37248 1.12602 0.86627 0.85175 0.78716 0.77726 1.20698 1.21267 1.19829 1.20610 0.96991 0.93208 0.96200 1.20870 0.94209 0.97244 1.00168 1.21019 0.94846 0.98332 1.00216 1.20976 0.99399 0.93767 1.01295 1.21038 0.94840 0.97490 1.00737 1.21026 0.94226 0.98565 0.98783 0.91083 0.92523 0.91672 0.90754 0.90699 0.90266 0.89119 0.88192 0.88992 0.76446 0.90804 0.92297 0.92233 0.76779 0.95868 0.94738 0.92920 0.86780 0.86882 0.86953 0.86689 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.22 5.89 -4.04 -0.02 1.20 16 3 N -0.63 -8.98 2.47 -179.43 -0.44 -9.42 16 4 C 0.15 2.05 4.70 -4.05 -0.02 2.03 16 5 C -0.16 -1.67 6.02 -27.88 -0.17 -1.84 16 6 C 0.52 6.01 7.83 -10.99 -0.09 5.92 16 7 O -0.54 -8.36 15.98 5.56 0.09 -8.27 16 8 N -0.74 -6.05 5.71 -67.08 -0.38 -6.43 16 9 C 0.09 0.61 10.70 59.85 0.64 1.25 16 10 C 0.70 12.84 8.24 -86.91 -0.72 12.12 16 11 O -0.59 -12.94 15.59 5.29 0.08 -12.86 16 12 N -0.71 -12.96 3.91 -59.81 -0.23 -13.20 16 13 C 0.20 4.09 2.11 -69.08 -0.15 3.94 16 14 H 0.09 1.96 7.44 -51.93 -0.39 1.57 16 15 C 0.02 0.58 4.49 -27.88 -0.13 0.46 16 16 C -0.52 -13.60 8.84 -34.44 -0.30 -13.90 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 20 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.07 -1.27 4.91 -104.63 -0.51 -1.78 16 25 C -0.11 -1.76 9.32 -39.58 -0.37 -2.13 16 26 C -0.13 -1.83 10.05 -39.58 -0.40 -2.22 16 27 C -0.14 -1.91 10.05 -39.58 -0.40 -2.31 16 28 C -0.12 -1.85 10.05 -39.58 -0.40 -2.24 16 29 C -0.11 -1.88 9.67 -39.58 -0.38 -2.26 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 35 H 0.08 0.96 8.03 -51.93 -0.42 0.55 16 36 H 0.09 1.50 7.38 -51.93 -0.38 1.11 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 2.12 8.83 -40.82 -0.36 1.76 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.40 6.66 6.33 -40.82 -0.26 6.40 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.11 1.76 7.73 -52.48 -0.41 1.36 16 48 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 49 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 50 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 51 H 0.12 2.03 8.04 -52.48 -0.42 1.61 16 LS Contribution 426.22 15.07 6.42 6.42 Total: -1.00 -34.20 426.22 -10.29 -44.49 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -8.42 Total: 9.91 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -3.12 Total: -1.97 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.32 Total: -53.77 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.17 Total: -21.13 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.20 -10.29 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893778786.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.036 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds