Wall clock time and date at job start Wed Apr 1 2020 05:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47325 * 2 1 4 4 C 1.46493 * 120.00444 * 270.27624 * 3 2 1 5 5 C 1.53000 * 109.47637 * 269.72749 * 4 3 2 6 6 C 1.50697 * 109.47306 * 180.02562 * 5 4 3 7 7 O 1.21276 * 120.00431 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99638 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99575 * 180.02562 * 8 6 5 10 10 C 1.34784 * 119.99635 * 90.00335 * 3 2 1 11 11 O 1.21588 * 119.99858 * 180.02562 * 10 3 2 12 12 N 1.34777 * 119.99964 * 0.02562 * 10 3 2 13 13 C 1.46496 * 119.99614 * 180.02562 * 12 10 3 14 14 H 1.08999 * 109.47513 * 34.99437 * 13 12 10 15 15 C 1.53005 * 109.46999 * 154.99671 * 13 12 10 16 16 C 1.50695 * 109.46978 * 294.99563 * 15 13 12 17 17 H 1.08001 * 120.00091 * 0.02562 * 16 15 13 18 18 C 1.37875 * 119.99897 * 179.97438 * 16 15 13 19 19 N 1.31515 * 120.00152 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00214 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46864 * 90.00167 * 20 18 16 22 22 H 1.48503 * 109.47159 * 210.00312 * 20 18 16 23 23 H 1.48498 * 109.46948 * 330.00090 * 20 18 16 24 24 C 1.50698 * 109.47133 * 274.99546 * 13 12 10 25 25 C 1.38236 * 119.99733 * 319.73012 * 24 13 12 26 26 C 1.38236 * 119.99905 * 179.78750 * 25 24 13 27 27 C 1.38235 * 120.00221 * 0.44254 * 26 25 24 28 28 C 1.38245 * 119.99811 * 359.81002 * 27 26 25 29 29 C 1.38231 * 120.00269 * 140.00231 * 24 13 12 30 30 H 1.08998 * 109.46465 * 299.99693 * 1 2 3 31 31 H 1.08993 * 109.47021 * 59.99589 * 1 2 3 32 32 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46903 * 240.00151 * 2 1 3 34 34 H 1.09004 * 109.47175 * 120.00822 * 2 1 3 35 35 H 1.09002 * 109.47192 * 29.72648 * 4 3 2 36 36 H 1.08996 * 109.47342 * 149.72358 * 4 3 2 37 37 H 1.09002 * 109.46747 * 300.00171 * 5 4 3 38 38 H 1.08996 * 109.47074 * 59.99445 * 5 4 3 39 39 H 0.96997 * 120.00204 * 359.97438 * 8 6 5 40 40 H 1.09000 * 109.46904 * 179.97438 * 9 8 6 41 41 H 1.09003 * 109.46716 * 299.99106 * 9 8 6 42 42 H 1.08996 * 109.47704 * 59.99196 * 9 8 6 43 43 H 0.96996 * 119.99887 * 359.97438 * 12 10 3 44 44 H 1.09001 * 109.47071 * 54.99707 * 15 13 12 45 45 H 1.09000 * 109.46960 * 174.99671 * 15 13 12 46 46 H 0.97001 * 120.00571 * 179.97438 * 19 18 16 47 47 H 1.08004 * 120.00443 * 359.97438 * 25 24 13 48 48 H 1.08002 * 120.00624 * 180.27464 * 26 25 24 49 49 H 1.07994 * 120.00724 * 179.83443 * 27 26 25 50 50 H 1.07994 * 119.99799 * 179.97438 * 28 27 26 51 51 H 1.08004 * 119.99949 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2568 2.0738 -1.2686 5 6 3.7018 1.8398 -1.7139 6 6 3.9472 2.5529 -3.0186 7 8 3.0542 3.1857 -3.5412 8 7 5.1588 2.4867 -3.6052 9 6 5.3975 3.1804 -4.8733 10 6 2.2431 2.0164 1.1673 11 8 2.6480 3.1629 1.1674 12 7 2.0190 1.3808 2.3345 13 6 2.2627 2.0715 3.6032 14 1 2.0098 3.1265 3.4970 15 6 1.3959 1.4471 4.6985 16 6 -0.0586 1.6879 4.3865 17 1 -0.3370 2.2316 3.4959 18 6 -1.0339 1.2133 5.2376 19 7 -0.6949 0.5508 6.3220 20 14 -2.8370 1.5112 4.8506 21 1 -3.3586 0.3899 4.0285 22 1 -3.6076 1.5967 6.1171 23 1 -2.9781 2.7838 4.0985 24 6 3.7167 1.9386 3.9763 25 6 4.3754 0.7403 3.7737 26 6 5.7103 0.6197 4.1118 27 6 6.3841 1.6945 4.6610 28 6 5.7240 2.8913 4.8684 29 6 4.3902 3.0132 4.5262 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 1.5759 1.6876 -2.0271 36 1 2.0857 3.1422 -1.1370 37 1 4.3827 2.2260 -0.9554 38 1 3.8729 0.7714 -1.8455 39 1 5.8729 1.9803 -3.1875 40 1 6.4269 3.0136 -5.1905 41 1 4.7162 2.7952 -5.6320 42 1 5.2271 4.2488 -4.7407 43 1 1.6956 0.4663 2.3344 44 1 1.5850 0.3746 4.7442 45 1 1.6415 1.9005 5.6588 46 1 -1.3811 0.2172 6.9210 47 1 3.8480 -0.1008 3.3484 48 1 6.2263 -0.3151 3.9495 49 1 7.4263 1.5995 4.9277 50 1 6.2503 3.7309 5.2979 51 1 3.8745 3.9482 4.6882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893778786.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:53 Heat of formation + Delta-G solvation = -69.179923 kcal Electronic energy + Delta-G solvation = -31273.921876 eV Core-core repulsion = 27172.075229 eV Total energy + Delta-G solvation = -4101.846647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.51481 -40.66183 -39.91661 -37.34284 -36.65149 -35.61852 -34.76694 -33.45162 -32.12457 -31.64055 -30.73294 -30.37891 -27.86983 -26.65315 -24.70645 -24.27840 -23.75804 -23.27439 -21.66763 -21.32681 -20.60661 -19.07311 -18.54198 -18.42693 -17.68309 -17.24456 -16.95686 -16.70533 -16.49553 -16.29046 -16.02770 -15.74499 -15.23536 -14.98536 -14.83909 -14.65076 -14.40101 -14.30294 -14.19941 -14.15267 -13.76851 -13.62254 -13.52367 -13.38125 -13.18381 -12.98889 -12.92751 -12.74967 -12.62237 -12.47518 -12.12611 -12.07233 -11.98887 -11.83220 -11.55608 -11.31672 -11.15598 -11.01149 -10.57583 -10.14269 -10.08693 -9.72165 -9.54059 -9.43614 -8.19654 -6.28808 0.55159 0.59944 1.37309 1.39995 1.50106 1.59184 1.67748 2.19600 2.39716 2.42350 2.95095 3.11154 3.19292 3.81127 3.99232 4.03511 4.05169 4.06512 4.12226 4.24596 4.35302 4.38733 4.44755 4.47161 4.53420 4.57138 4.61907 4.69248 4.76728 4.81767 4.82659 4.88598 4.94650 4.96695 5.03355 5.16284 5.23681 5.31511 5.39659 5.43678 5.44694 5.62570 5.64895 5.66354 5.68202 5.79312 5.91914 6.07416 6.19043 6.23985 6.51374 6.83167 7.09826 7.23048 7.39759 7.68955 8.90960 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008376 B = 0.003585 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.922685 B = 7808.995746 C =10289.155168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 N -0.624 5.624 4 C 0.154 3.846 5 C -0.143 4.143 6 C 0.515 3.485 7 O -0.586 6.586 8 N -0.725 5.725 9 C 0.083 3.917 10 C 0.702 3.298 11 O -0.636 6.636 12 N -0.709 5.709 13 C 0.217 3.783 14 H 0.050 0.950 15 C 0.040 3.960 16 C -0.525 4.525 17 H 0.048 0.952 18 C 0.015 3.985 19 N -0.924 5.924 20 Si 0.951 3.049 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.277 1.277 24 C -0.095 4.095 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.135 4.135 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.419 0.581 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.403 0.597 44 H 0.014 0.986 45 H 0.004 0.996 46 H 0.264 0.736 47 H 0.120 0.880 48 H 0.148 0.852 49 H 0.151 0.849 50 H 0.141 0.859 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.227 -5.632 -16.560 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.360 5.360 4 C 0.030 3.970 5 C -0.184 4.184 6 C 0.302 3.698 7 O -0.467 6.467 8 N -0.377 5.377 9 C -0.061 4.061 10 C 0.403 3.597 11 O -0.518 6.518 12 N -0.363 5.363 13 C 0.111 3.889 14 H 0.069 0.931 15 C 0.003 3.997 16 C -0.563 4.563 17 H 0.066 0.934 18 C -0.184 4.184 19 N -0.564 5.564 20 Si 0.777 3.223 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.202 1.202 24 C -0.097 4.097 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.153 4.153 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.256 0.744 40 H 0.130 0.870 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.240 0.760 44 H 0.032 0.968 45 H 0.022 0.978 46 H 0.073 0.927 47 H 0.138 0.862 48 H 0.166 0.834 49 H 0.169 0.831 50 H 0.159 0.841 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.803 -4.461 -16.791 23.486 hybrid contribution -1.339 0.018 0.508 1.432 sum 14.464 -4.443 -16.283 22.228 Atomic orbital electron populations 1.22230 0.96313 1.03228 1.01512 1.21740 0.94243 0.80910 1.04787 1.47173 1.69843 1.15331 1.03675 1.20860 0.95448 0.97203 0.83535 1.21931 0.99035 1.03521 0.93944 1.20859 0.82431 0.80107 0.86420 1.90700 1.45157 1.44204 1.66590 1.45776 1.13092 1.53772 1.25057 1.21669 1.03328 0.96534 0.84577 1.16104 0.78263 0.83992 0.81322 1.90841 1.55334 1.18653 1.86960 1.45049 1.70191 1.17536 1.03507 1.19570 0.90315 0.95827 0.83199 0.93137 1.19116 0.93132 0.95396 0.92094 1.21337 0.92026 1.35110 1.07811 0.93382 1.25696 1.02996 0.94912 0.94801 1.70056 1.34688 1.38188 1.13456 0.85664 0.80387 0.78659 0.77627 1.19249 1.20852 1.20219 1.20455 0.95801 0.94943 0.98480 1.21025 0.95490 0.96469 1.00570 1.21426 0.93832 0.99949 0.98770 1.21454 1.01057 0.92726 0.99452 1.21361 0.93666 0.99155 1.00030 1.21152 0.95875 0.98161 1.00139 0.94926 0.92293 0.89379 0.86550 0.90156 0.88687 0.93166 0.89181 0.85240 0.74450 0.87022 0.92839 0.93795 0.75988 0.96783 0.97771 0.92713 0.86167 0.83401 0.83127 0.84117 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 10.24 71.98 0.74 -3.26 16 2 C 0.11 2.14 5.89 86.38 0.51 2.64 16 3 N -0.62 -17.50 2.47 -839.84 -2.08 -19.57 16 4 C 0.15 4.08 4.70 86.38 0.41 4.49 16 5 C -0.14 -2.84 6.02 29.85 0.18 -2.66 16 6 C 0.51 11.45 7.83 87.66 0.69 12.14 16 7 O -0.59 -18.42 15.98 -3.02 -0.05 -18.46 16 8 N -0.72 -10.38 5.71 -484.52 -2.77 -13.15 16 9 C 0.08 1.02 10.70 127.77 1.37 2.39 16 10 C 0.70 26.52 8.24 179.05 1.47 28.00 16 11 O -0.64 -29.38 15.59 -3.99 -0.06 -29.45 16 12 N -0.71 -26.83 3.91 -461.41 -1.80 -28.64 16 13 C 0.22 9.47 2.11 44.25 0.09 9.56 16 14 H 0.05 2.53 7.44 -2.39 -0.02 2.51 16 15 C 0.04 2.03 4.49 29.85 0.13 2.16 16 16 C -0.52 -28.84 8.84 25.60 0.23 -28.62 16 17 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 18 C 0.01 0.82 5.46 84.65 0.46 1.28 16 19 N -0.92 -53.82 13.29 21.45 0.28 -53.54 16 20 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 C -0.10 -3.66 4.91 -19.87 -0.10 -3.76 16 25 C -0.12 -3.80 9.32 22.27 0.21 -3.59 16 26 C -0.12 -3.18 10.05 22.27 0.22 -2.96 16 27 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 28 C -0.12 -3.57 10.05 22.27 0.22 -3.34 16 29 C -0.13 -4.88 9.67 22.27 0.22 -4.67 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 1.48 8.07 -2.39 -0.02 1.46 16 34 H 0.08 1.58 6.36 -2.38 -0.02 1.57 16 35 H 0.09 2.22 8.03 -2.39 -0.02 2.20 16 36 H 0.05 1.76 7.38 -2.39 -0.02 1.74 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.42 3.16 8.83 -92.71 -0.82 2.34 16 40 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.40 13.89 6.33 -92.71 -0.59 13.31 16 44 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 47 H 0.12 3.62 7.73 -2.91 -0.02 3.60 16 48 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 49 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 50 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 51 H 0.11 3.99 8.04 -2.91 -0.02 3.97 16 Total: -1.00 -79.74 426.22 2.35 -77.39 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.48 Total: 32.59 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 7.27 Total: 6.82 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -6.36 Total: -114.90 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.11 Total: -47.91 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -79.74 2.35 -77.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893778786.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.208 kcal (2) G-P(sol) polarization free energy of solvation -79.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds