Wall clock time and date at job start Wed Apr 1 2020 04:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47242 * 2 1 4 4 C 1.46503 * 120.00036 * 270.00217 * 3 2 1 5 5 C 1.39049 * 119.99686 * 90.00380 * 3 2 1 6 6 C 1.39222 * 119.92893 * 180.02562 * 5 3 2 7 7 C 1.37602 * 120.07012 * 180.02562 * 6 5 3 8 8 C 1.39806 * 119.93006 * 359.97438 * 7 6 5 9 9 C 1.47521 * 120.06531 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00469 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99302 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99742 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47227 * 180.02562 * 12 11 9 14 14 H 1.09001 * 110.88667 * 57.42601 * 13 12 11 15 15 C 1.54913 * 111.00304 * 293.54306 * 13 12 11 16 16 N 1.47420 * 104.83377 * 204.87581 * 15 13 12 17 17 C 1.36931 * 125.65007 * 204.09132 * 16 15 13 18 18 H 1.08004 * 120.00297 * 10.29544 * 17 16 15 19 19 C 1.38810 * 120.00122 * 190.29721 * 17 16 15 20 20 N 1.31624 * 119.99794 * 194.86669 * 19 17 16 21 21 Si 1.86798 * 120.00305 * 14.86034 * 19 17 16 22 22 H 1.48494 * 109.47610 * 174.71730 * 21 19 17 23 23 H 1.48506 * 109.47011 * 294.72191 * 21 19 17 24 24 H 1.48498 * 109.46749 * 54.71718 * 21 19 17 25 25 C 1.47023 * 108.70207 * 24.36210 * 16 15 13 26 26 C 1.54336 * 107.26651 * 358.57932 * 25 16 15 27 27 H 1.08994 * 111.00688 * 219.60280 * 26 25 16 28 28 O 1.42902 * 110.51137 * 96.45469 * 26 25 16 29 29 C 1.39795 * 119.85875 * 0.27461 * 8 7 6 30 30 C 1.37610 * 119.93178 * 359.46497 * 29 8 7 31 31 H 1.09003 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47104 * 299.99552 * 1 2 3 33 33 H 1.08996 * 109.47666 * 59.99769 * 1 2 3 34 34 H 1.09004 * 109.46720 * 240.00121 * 2 1 3 35 35 H 1.09003 * 109.47334 * 120.00813 * 2 1 3 36 36 H 1.08990 * 109.47439 * 270.00036 * 4 3 2 37 37 H 1.08995 * 109.46962 * 30.00606 * 4 3 2 38 38 H 1.09000 * 109.46687 * 150.00014 * 4 3 2 39 39 H 1.08004 * 119.96634 * 0.02562 * 6 5 3 40 40 H 1.07998 * 120.04045 * 180.02562 * 7 6 5 41 41 H 0.96993 * 120.00067 * 0.02562 * 11 9 8 42 42 H 1.09001 * 109.47526 * 59.99905 * 12 11 9 43 43 H 1.09008 * 109.47271 * 300.00086 * 12 11 9 44 44 H 1.09006 * 110.36114 * 86.03956 * 15 13 12 45 45 H 1.08996 * 110.36872 * 323.72001 * 15 13 12 46 46 H 0.96992 * 120.00563 * 355.01997 * 20 19 17 47 47 H 1.09004 * 109.88654 * 118.12699 * 25 16 15 48 48 H 1.08999 * 109.88257 * 239.29392 * 25 16 15 49 49 H 0.96702 * 114.00301 * 66.50406 * 28 26 25 50 50 H 1.08001 * 120.02946 * 179.73041 * 29 8 7 51 51 H 1.08000 * 119.96436 * 180.25265 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2501 2.0366 1.2042 6 6 2.7137 3.3493 1.2026 7 6 2.9446 4.0005 2.3926 8 6 2.7127 3.3426 3.6042 9 6 2.9586 4.0380 4.8817 10 8 3.3640 5.1844 4.8817 11 7 2.7340 3.4026 6.0489 12 6 2.9788 4.0929 7.3176 13 6 2.6479 3.1553 8.4805 14 1 3.2339 2.2383 8.4191 15 6 1.1313 2.8432 8.5278 16 7 0.8620 2.4921 9.9340 17 6 -0.1766 1.7182 10.3785 18 1 -0.7848 1.1730 9.6719 19 6 -0.4477 1.6343 11.7373 20 7 -1.2366 0.6846 12.1936 21 14 0.3073 2.8691 12.9184 22 1 -0.2343 2.6443 14.2826 23 1 1.7824 2.6983 12.9369 24 1 -0.0260 4.2463 12.4742 25 6 1.8893 3.1159 10.7808 26 6 2.8631 3.8625 9.8447 27 1 3.8935 3.7473 10.1806 28 8 2.5131 5.2453 9.7581 29 6 2.2521 2.0227 3.6024 30 6 2.0180 1.3787 2.4090 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 3.2918 1.9006 -1.5835 37 1 1.5816 1.6878 -2.0283 38 1 2.0955 3.1410 -1.1383 39 1 2.8923 3.8572 0.2663 40 1 3.3038 5.0190 2.3908 41 1 2.4111 2.4880 6.0488 42 1 2.3490 4.9807 7.3757 43 1 4.0270 4.3867 7.3751 44 1 0.8967 2.0022 7.8752 45 1 0.5540 3.7213 8.2388 46 1 -1.6859 0.0882 11.5746 47 1 1.4237 3.8189 11.4716 48 1 2.4277 2.3483 11.3366 49 1 2.6296 5.7331 10.5850 50 1 2.0762 1.5104 4.5367 51 1 1.6583 0.3604 2.4070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958748166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:58 Heat of formation + Delta-G solvation = -10.847163 kcal Electronic energy + Delta-G solvation = -30282.823140 eV Core-core repulsion = 26183.505992 eV Total energy + Delta-G solvation = -4099.317148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.36881 -39.32852 -38.53657 -36.59351 -35.13889 -34.73179 -32.51368 -32.11503 -31.03115 -30.63010 -29.55324 -28.12989 -26.77787 -25.71213 -24.12583 -23.02433 -22.48424 -21.50300 -20.97890 -20.03068 -19.81099 -18.32315 -17.85109 -17.18523 -16.73623 -16.40583 -15.63535 -15.50899 -15.19438 -15.18228 -14.98626 -14.41082 -14.34571 -14.01853 -13.97345 -13.74174 -13.53245 -13.43924 -13.18597 -12.99238 -12.74073 -12.66933 -12.56074 -12.41021 -12.35922 -12.18817 -11.94232 -11.53878 -11.17440 -11.12307 -10.99409 -10.78914 -10.55696 -10.18534 -10.14665 -9.96086 -9.77315 -9.25842 -9.20770 -8.96828 -8.89092 -8.68689 -7.63470 -7.08988 -6.30749 -3.23707 0.93502 1.24969 2.66035 2.94824 3.31441 3.34029 3.46575 3.67404 3.86568 4.38591 4.41165 4.45313 4.57863 4.67244 4.74732 4.76033 4.81068 4.85740 4.94605 5.03800 5.09483 5.13353 5.15324 5.18000 5.21355 5.28004 5.29423 5.38659 5.46081 5.47514 5.63344 5.72718 5.75554 5.81536 5.83444 5.94769 6.09047 6.12291 6.18457 6.30449 6.35468 6.43181 6.49360 6.53142 6.61295 6.78572 6.83305 7.09795 7.62601 7.65060 7.91639 8.30795 8.37138 9.02560 9.54392 10.20933 11.18685 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.002231 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.717675 B =12549.748627 C =14192.105556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.115 3.885 3 N -0.627 5.627 4 C 0.090 3.910 5 C 0.239 3.761 6 C -0.211 4.211 7 C -0.009 4.009 8 C -0.195 4.195 9 C 0.562 3.438 10 O -0.549 6.549 11 N -0.726 5.726 12 C 0.141 3.859 13 C -0.110 4.110 14 H 0.093 0.907 15 C 0.144 3.856 16 N -0.609 5.609 17 C -0.320 4.320 18 H 0.078 0.922 19 C -0.027 4.027 20 N -0.930 5.930 21 Si 1.078 2.922 22 H -0.302 1.302 23 H -0.288 1.288 24 H -0.297 1.297 25 C 0.082 3.918 26 C 0.101 3.899 27 H 0.068 0.932 28 O -0.558 6.558 29 C -0.034 4.034 30 C -0.207 4.207 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.398 0.602 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.031 0.969 46 H 0.261 0.739 47 H 0.036 0.964 48 H 0.052 0.948 49 H 0.377 0.623 50 H 0.126 0.874 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.243 0.899 -25.599 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.008 4.008 3 N -0.336 5.336 4 C -0.053 4.053 5 C 0.135 3.865 6 C -0.233 4.233 7 C -0.029 4.029 8 C -0.200 4.200 9 C 0.350 3.650 10 O -0.429 6.429 11 N -0.377 5.377 12 C 0.018 3.982 13 C -0.130 4.130 14 H 0.111 0.889 15 C 0.019 3.981 16 N -0.337 5.337 17 C -0.448 4.448 18 H 0.096 0.904 19 C -0.226 4.226 20 N -0.572 5.572 21 Si 0.913 3.087 22 H -0.230 1.230 23 H -0.216 1.216 24 H -0.226 1.226 25 C -0.043 4.043 26 C 0.041 3.959 27 H 0.085 0.915 28 O -0.363 6.363 29 C -0.053 4.053 30 C -0.229 4.229 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.152 0.848 41 H 0.234 0.766 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.224 0.776 50 H 0.144 0.856 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.413 1.765 -24.752 26.911 hybrid contribution -0.384 -0.779 -1.058 1.369 sum 10.028 0.986 -25.810 27.708 Atomic orbital electron populations 1.22238 0.96040 1.02283 1.02733 1.21473 0.94291 0.82061 1.02953 1.46463 1.70532 1.13375 1.03273 1.21682 1.00719 0.98003 0.84937 1.18012 0.91347 0.91288 0.85813 1.20621 1.10053 0.94033 0.98618 1.20981 0.92348 0.99278 0.90281 1.19692 1.11219 0.95615 0.93486 1.18154 0.77270 0.85891 0.83636 1.90750 1.46707 1.17632 1.87765 1.45980 1.68133 1.17664 1.05931 1.21124 1.01304 0.95484 0.80307 1.22717 0.99666 0.97860 0.92764 0.88903 1.21592 0.91066 0.97653 0.87834 1.44743 1.29113 1.59247 1.00602 1.20167 1.08370 1.22276 0.93949 0.90385 1.25854 1.00265 1.00951 0.95565 1.70918 1.32756 1.17064 1.36471 0.83713 0.74927 0.74869 0.75169 1.22992 1.21561 1.22633 1.22747 0.91157 0.96001 0.94399 1.22729 0.96504 0.81482 0.95147 0.91462 1.86468 1.90499 1.20732 1.38610 1.21077 0.93411 0.93047 0.97797 1.20593 1.10421 1.01133 0.90743 0.91534 0.91961 0.92537 0.90705 0.90264 0.93116 0.91462 0.91046 0.85518 0.84825 0.76644 0.90075 0.91670 0.93948 0.95152 0.92916 0.94710 0.92982 0.77607 0.85630 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.12 0.63 5.86 -4.05 -0.02 0.61 16 3 N -0.63 -4.45 2.99 -179.63 -0.54 -4.99 16 4 C 0.09 0.44 10.18 59.85 0.61 1.05 16 5 C 0.24 2.22 6.55 -83.86 -0.55 1.67 16 6 C -0.21 -2.03 9.18 -39.45 -0.36 -2.39 16 7 C -0.01 -0.11 9.58 -39.23 -0.38 -0.48 16 8 C -0.19 -2.46 5.88 -104.95 -0.62 -3.07 16 9 C 0.56 8.49 7.76 -12.47 -0.10 8.40 16 10 O -0.55 -10.13 16.34 5.29 0.09 -10.04 16 11 N -0.73 -10.03 5.36 -61.35 -0.33 -10.36 16 12 C 0.14 2.15 4.74 -4.05 -0.02 2.13 16 13 C -0.11 -1.77 3.03 -88.47 -0.27 -2.04 16 14 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.14 2.89 6.40 -2.53 -0.02 2.87 16 16 N -0.61 -14.88 3.33 -170.06 -0.57 -15.44 16 17 C -0.32 -9.18 10.56 -15.06 -0.16 -9.34 16 18 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 19 C -0.03 -0.81 5.50 -17.43 -0.10 -0.90 16 20 N -0.93 -29.31 13.70 55.49 0.76 -28.55 16 21 Si 1.08 26.85 24.53 -169.99 -4.17 22.68 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 23 H -0.29 -6.43 5.40 56.52 0.31 -6.12 16 24 H -0.30 -7.20 6.83 56.52 0.39 -6.81 16 25 C 0.08 1.75 4.37 -3.06 -0.01 1.74 16 26 C 0.10 1.68 4.09 -24.89 -0.10 1.58 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 O -0.56 -8.96 12.09 -35.23 -0.43 -9.39 16 29 C -0.03 -0.36 9.53 -39.23 -0.37 -0.73 16 30 C -0.21 -1.96 9.18 -39.45 -0.36 -2.32 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.30 8.07 -51.93 -0.42 -0.11 16 35 H 0.08 0.43 6.17 -51.93 -0.32 0.11 16 36 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 38 H 0.07 0.34 6.17 -51.93 -0.32 0.02 16 39 H 0.13 0.95 6.11 -52.48 -0.32 0.63 16 40 H 0.13 1.55 7.64 -52.49 -0.40 1.15 16 41 H 0.40 4.72 6.35 -40.82 -0.26 4.46 16 42 H 0.08 1.43 7.43 -51.93 -0.39 1.04 16 43 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.65 8.00 -51.93 -0.42 0.24 16 46 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 47 H 0.04 0.79 3.81 -51.93 -0.20 0.59 16 48 H 0.05 1.14 6.70 -51.93 -0.35 0.79 16 49 H 0.38 4.51 9.12 45.56 0.42 4.93 16 50 H 0.13 1.13 6.39 -52.49 -0.34 0.80 16 51 H 0.13 0.99 6.11 -52.49 -0.32 0.67 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -36.62 398.36 -8.74 -45.36 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.12 Total: 6.55 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.44 Total: -1.82 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.67 Total: -59.35 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.34 Total: -19.43 kcal Atomic # 14 Polarization: 26.85 SS G_CDS: -4.17 Total: 22.68 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.62 -8.74 -45.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958748166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.511 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds