Wall clock time and date at job start Wed Apr 1 2020 04:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47242 * 2 1 4 4 C 1.46503 * 120.00036 * 270.00217 * 3 2 1 5 5 C 1.39049 * 119.99686 * 90.00380 * 3 2 1 6 6 C 1.39222 * 119.92893 * 180.02562 * 5 3 2 7 7 C 1.37602 * 120.07012 * 180.02562 * 6 5 3 8 8 C 1.39806 * 119.93006 * 359.97438 * 7 6 5 9 9 C 1.47521 * 120.06531 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00469 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99302 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99742 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47227 * 180.02562 * 12 11 9 14 14 H 1.09001 * 110.88667 * 57.42601 * 13 12 11 15 15 C 1.54913 * 111.00304 * 293.54306 * 13 12 11 16 16 N 1.47420 * 104.83377 * 204.87581 * 15 13 12 17 17 C 1.36931 * 125.65007 * 204.09132 * 16 15 13 18 18 H 1.08004 * 120.00297 * 10.29544 * 17 16 15 19 19 C 1.38810 * 120.00122 * 190.29721 * 17 16 15 20 20 N 1.31624 * 119.99794 * 194.86669 * 19 17 16 21 21 Si 1.86798 * 120.00305 * 14.86034 * 19 17 16 22 22 H 1.48494 * 109.47610 * 174.71730 * 21 19 17 23 23 H 1.48506 * 109.47011 * 294.72191 * 21 19 17 24 24 H 1.48498 * 109.46749 * 54.71718 * 21 19 17 25 25 C 1.47023 * 108.70207 * 24.36210 * 16 15 13 26 26 C 1.54336 * 107.26651 * 358.57932 * 25 16 15 27 27 H 1.08994 * 111.00688 * 219.60280 * 26 25 16 28 28 O 1.42902 * 110.51137 * 96.45469 * 26 25 16 29 29 C 1.39795 * 119.85875 * 0.27461 * 8 7 6 30 30 C 1.37610 * 119.93178 * 359.46497 * 29 8 7 31 31 H 1.09003 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47104 * 299.99552 * 1 2 3 33 33 H 1.08996 * 109.47666 * 59.99769 * 1 2 3 34 34 H 1.09004 * 109.46720 * 240.00121 * 2 1 3 35 35 H 1.09003 * 109.47334 * 120.00813 * 2 1 3 36 36 H 1.08990 * 109.47439 * 270.00036 * 4 3 2 37 37 H 1.08995 * 109.46962 * 30.00606 * 4 3 2 38 38 H 1.09000 * 109.46687 * 150.00014 * 4 3 2 39 39 H 1.08004 * 119.96634 * 0.02562 * 6 5 3 40 40 H 1.07998 * 120.04045 * 180.02562 * 7 6 5 41 41 H 0.96993 * 120.00067 * 0.02562 * 11 9 8 42 42 H 1.09001 * 109.47526 * 59.99905 * 12 11 9 43 43 H 1.09008 * 109.47271 * 300.00086 * 12 11 9 44 44 H 1.09006 * 110.36114 * 86.03956 * 15 13 12 45 45 H 1.08996 * 110.36872 * 323.72001 * 15 13 12 46 46 H 0.96992 * 120.00563 * 355.01997 * 20 19 17 47 47 H 1.09004 * 109.88654 * 118.12699 * 25 16 15 48 48 H 1.08999 * 109.88257 * 239.29392 * 25 16 15 49 49 H 0.96702 * 114.00301 * 66.50406 * 28 26 25 50 50 H 1.08001 * 120.02946 * 179.73041 * 29 8 7 51 51 H 1.08000 * 119.96436 * 180.25265 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2501 2.0366 1.2042 6 6 2.7137 3.3493 1.2026 7 6 2.9446 4.0005 2.3926 8 6 2.7127 3.3426 3.6042 9 6 2.9586 4.0380 4.8817 10 8 3.3640 5.1844 4.8817 11 7 2.7340 3.4026 6.0489 12 6 2.9788 4.0929 7.3176 13 6 2.6479 3.1553 8.4805 14 1 3.2339 2.2383 8.4191 15 6 1.1313 2.8432 8.5278 16 7 0.8620 2.4921 9.9340 17 6 -0.1766 1.7182 10.3785 18 1 -0.7848 1.1730 9.6719 19 6 -0.4477 1.6343 11.7373 20 7 -1.2366 0.6846 12.1936 21 14 0.3073 2.8691 12.9184 22 1 -0.2343 2.6443 14.2826 23 1 1.7824 2.6983 12.9369 24 1 -0.0260 4.2463 12.4742 25 6 1.8893 3.1159 10.7808 26 6 2.8631 3.8625 9.8447 27 1 3.8935 3.7473 10.1806 28 8 2.5131 5.2453 9.7581 29 6 2.2521 2.0227 3.6024 30 6 2.0180 1.3787 2.4090 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 3.2918 1.9006 -1.5835 37 1 1.5816 1.6878 -2.0283 38 1 2.0955 3.1410 -1.1383 39 1 2.8923 3.8572 0.2663 40 1 3.3038 5.0190 2.3908 41 1 2.4111 2.4880 6.0488 42 1 2.3490 4.9807 7.3757 43 1 4.0270 4.3867 7.3751 44 1 0.8967 2.0022 7.8752 45 1 0.5540 3.7213 8.2388 46 1 -1.6859 0.0882 11.5746 47 1 1.4237 3.8189 11.4716 48 1 2.4277 2.3483 11.3366 49 1 2.6296 5.7331 10.5850 50 1 2.0762 1.5104 4.5367 51 1 1.6583 0.3604 2.4070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958748166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:57 Heat of formation + Delta-G solvation = -38.718091 kcal Electronic energy + Delta-G solvation = -30284.031714 eV Core-core repulsion = 26183.505992 eV Total energy + Delta-G solvation = -4100.525722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.31276 -40.43481 -39.77854 -37.30265 -36.58089 -36.14709 -34.25011 -32.97487 -32.00953 -31.71033 -30.52025 -29.68967 -27.63776 -26.98620 -25.24177 -24.24194 -23.25495 -22.76623 -22.24762 -21.34529 -20.89706 -19.76628 -19.21110 -18.37857 -17.83868 -17.33196 -17.09567 -16.49138 -16.30661 -15.98492 -15.92645 -15.71789 -15.62838 -15.25627 -15.09124 -14.81187 -14.72967 -14.55614 -14.24566 -14.17191 -14.06020 -13.58079 -13.41157 -13.35445 -13.29018 -13.07291 -12.93328 -12.71593 -12.61873 -12.31440 -12.14356 -12.02939 -11.77523 -11.64668 -11.60903 -11.21466 -10.96615 -10.91936 -10.86630 -10.53194 -10.08797 -9.99362 -9.15891 -8.62759 -8.29778 -5.48499 0.06658 0.47403 1.36016 1.50305 1.71183 1.93885 2.12285 2.21043 2.52901 2.97963 3.07990 3.21694 3.27591 3.68375 3.70981 3.77442 3.86290 3.91267 3.94019 4.08127 4.27378 4.28105 4.30334 4.36143 4.38133 4.48179 4.52543 4.54406 4.62286 4.64334 4.70722 4.72722 4.85652 4.89029 4.90734 4.93011 4.93428 5.03059 5.08180 5.22161 5.27449 5.31089 5.35789 5.42017 5.50836 5.51957 5.75350 6.08157 6.27417 6.43911 6.55989 6.81113 6.89275 7.24829 7.42470 8.07727 8.87496 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.002231 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.717675 B =12549.748627 C =14192.105556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 N -0.624 5.624 4 C 0.082 3.918 5 C 0.242 3.758 6 C -0.213 4.213 7 C -0.019 4.019 8 C -0.222 4.222 9 C 0.560 3.440 10 O -0.591 6.591 11 N -0.719 5.719 12 C 0.154 3.846 13 C -0.094 4.094 14 H 0.116 0.884 15 C 0.141 3.859 16 N -0.630 5.630 17 C -0.309 4.309 18 H 0.046 0.954 19 C -0.087 4.087 20 N -0.966 5.966 21 Si 1.116 2.884 22 H -0.314 1.314 23 H -0.242 1.242 24 H -0.289 1.289 25 C 0.069 3.931 26 C 0.112 3.888 27 H 0.112 0.888 28 O -0.570 6.570 29 C -0.033 4.033 30 C -0.212 4.212 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.147 0.853 40 H 0.125 0.875 41 H 0.408 0.592 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.013 0.987 46 H 0.246 0.754 47 H 0.031 0.969 48 H 0.052 0.948 49 H 0.395 0.605 50 H 0.137 0.863 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.470 0.822 -27.254 29.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 N -0.332 5.332 4 C -0.060 4.060 5 C 0.136 3.864 6 C -0.235 4.235 7 C -0.039 4.039 8 C -0.227 4.227 9 C 0.351 3.649 10 O -0.473 6.473 11 N -0.371 5.371 12 C 0.030 3.970 13 C -0.114 4.114 14 H 0.134 0.866 15 C 0.016 3.984 16 N -0.358 5.358 17 C -0.438 4.438 18 H 0.064 0.936 19 C -0.279 4.279 20 N -0.611 5.611 21 Si 0.944 3.056 22 H -0.244 1.244 23 H -0.166 1.166 24 H -0.218 1.218 25 C -0.055 4.055 26 C 0.052 3.948 27 H 0.129 0.871 28 O -0.378 6.378 29 C -0.053 4.053 30 C -0.235 4.235 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.245 0.755 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.031 0.969 46 H 0.055 0.945 47 H 0.048 0.952 48 H 0.070 0.930 49 H 0.246 0.754 50 H 0.155 0.845 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.666 1.671 -26.469 29.391 hybrid contribution -1.179 -0.826 -0.787 1.641 sum 11.486 0.845 -27.256 29.590 Atomic orbital electron populations 1.22195 0.96040 1.02813 1.01823 1.21649 0.94208 0.81300 1.04076 1.46748 1.69257 1.13969 1.03224 1.21877 1.01776 0.98077 0.84279 1.18176 0.90279 0.91230 0.86743 1.20782 1.09741 0.94324 0.98662 1.21023 0.92837 0.99161 0.90874 1.19580 1.13971 0.96637 0.92498 1.18563 0.76356 0.85458 0.84568 1.90715 1.48857 1.19408 1.88354 1.45898 1.67799 1.18016 1.05366 1.20898 1.01209 0.94426 0.80506 1.22633 0.96515 0.98977 0.93240 0.86610 1.21698 0.94022 0.96962 0.85727 1.44843 1.28838 1.59053 1.03030 1.20079 1.08742 1.21511 0.93482 0.93559 1.27201 1.00823 1.01981 0.97905 1.71029 1.34929 1.18723 1.36372 0.83314 0.77091 0.72866 0.72374 1.24388 1.16645 1.21762 1.23002 0.91181 0.96114 0.95251 1.22738 0.97194 0.81140 0.93728 0.87051 1.86458 1.90666 1.20461 1.40219 1.21199 0.92870 0.92302 0.98883 1.20807 1.10254 1.01909 0.90486 0.90349 0.93809 0.92442 0.88649 0.90124 0.92194 0.89768 0.90930 0.83558 0.85685 0.75468 0.92557 0.90677 0.93567 0.96874 0.94464 0.95165 0.92970 0.75432 0.84491 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.24 71.98 0.74 -0.79 16 2 C 0.11 0.91 5.86 86.38 0.51 1.42 16 3 N -0.62 -7.32 2.99 -722.23 -2.16 -9.48 16 4 C 0.08 0.59 10.18 127.77 1.30 1.89 16 5 C 0.24 4.07 6.55 38.47 0.25 4.32 16 6 C -0.21 -3.84 9.18 22.36 0.21 -3.64 16 7 C -0.02 -0.44 9.58 22.50 0.22 -0.23 16 8 C -0.22 -5.57 5.88 -20.07 -0.12 -5.69 16 9 C 0.56 17.00 7.76 86.69 0.67 17.67 16 10 O -0.59 -22.21 16.34 -3.99 -0.07 -22.28 16 11 N -0.72 -19.30 5.36 -466.28 -2.50 -21.80 16 12 C 0.15 4.43 4.74 86.38 0.41 4.84 16 13 C -0.09 -2.78 3.03 -9.40 -0.03 -2.81 16 14 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 15 C 0.14 5.53 6.40 86.86 0.56 6.09 16 16 N -0.63 -30.30 3.33 -691.96 -2.30 -32.61 16 17 C -0.31 -18.08 10.56 84.03 0.89 -17.19 16 18 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 19 C -0.09 -5.22 5.50 84.86 0.47 -4.76 16 20 N -0.97 -62.72 13.70 21.65 0.30 -62.42 16 21 Si 1.12 53.61 24.53 68.60 1.68 55.29 16 22 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 23 H -0.24 -9.79 5.40 99.48 0.54 -9.25 16 24 H -0.29 -13.36 6.83 99.48 0.68 -12.68 16 25 C 0.07 2.75 4.37 86.73 0.38 3.12 16 26 C 0.11 3.30 4.09 31.79 0.13 3.43 16 27 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 28 O -0.57 -16.60 12.09 -148.98 -1.80 -18.40 16 29 C -0.03 -0.67 9.53 22.50 0.21 -0.46 16 30 C -0.21 -3.71 9.18 22.36 0.21 -3.50 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 0.45 8.07 -2.39 -0.02 0.43 16 35 H 0.08 0.67 6.17 -2.39 -0.01 0.66 16 36 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 0.35 8.07 -2.39 -0.02 0.33 16 38 H 0.07 0.52 6.17 -2.39 -0.01 0.51 16 39 H 0.15 1.95 6.11 -2.91 -0.02 1.93 16 40 H 0.13 3.02 7.64 -2.91 -0.02 3.00 16 41 H 0.41 9.19 6.35 -92.71 -0.59 8.60 16 42 H 0.06 1.94 7.43 -2.39 -0.02 1.92 16 43 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 44 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 45 H 0.01 0.57 8.00 -2.39 -0.02 0.55 16 46 H 0.25 16.05 8.73 -92.71 -0.81 15.24 16 47 H 0.03 1.27 3.81 -2.38 -0.01 1.27 16 48 H 0.05 2.09 6.70 -2.39 -0.02 2.07 16 49 H 0.40 8.09 9.12 -74.06 -0.68 7.41 16 50 H 0.14 2.32 6.39 -2.91 -0.02 2.30 16 51 H 0.14 1.96 6.11 -2.91 -0.02 1.94 16 Total: -1.00 -82.44 398.36 -0.39 -82.83 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.54 Total: 25.14 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 6.99 Total: 3.72 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -6.66 Total: -126.30 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -1.87 Total: -40.68 kcal Atomic # 14 Polarization: 53.61 SS G_CDS: 1.68 Total: 55.29 kcal Total: -82.44 -0.39 -82.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958748166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.112 kcal (2) G-P(sol) polarization free energy of solvation -82.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds