Wall clock time and date at job start Wed Apr 1 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47376 * 2 1 4 4 C 1.34772 * 120.00287 * 269.01248 * 3 2 1 5 5 O 1.21616 * 120.00533 * 184.28815 * 4 3 2 6 6 C 1.47297 * 119.99634 * 4.28355 * 4 3 2 7 7 C 1.37993 * 120.88436 * 302.62914 * 6 4 3 8 8 N 1.34343 * 120.36914 * 179.69419 * 7 6 4 9 9 C 1.46508 * 118.80116 * 180.31298 * 8 7 6 10 10 C 1.35573 * 122.39306 * 0.62639 * 8 7 6 11 11 C 1.34872 * 121.79639 * 359.66249 * 10 8 7 12 12 C 1.41659 * 119.33847 * 0.02562 * 11 10 8 13 13 O 1.22094 * 121.06358 * 179.97438 * 12 11 10 14 14 C 1.46501 * 119.99844 * 89.00888 * 3 2 1 15 15 H 1.09000 * 109.20766 * 0.64638 * 14 3 2 16 16 C 1.50134 * 109.20713 * 120.00396 * 14 3 2 17 17 C 1.52529 * 105.41439 * 218.02808 * 16 14 3 18 18 C 1.46232 * 114.27578 * 270.59398 * 17 16 14 19 19 N 1.50167 * 107.53459 * 58.40524 * 18 17 16 20 20 C 1.36942 * 120.53678 * 109.57033 * 19 18 17 21 21 H 1.07996 * 120.00242 * 151.44329 * 20 19 18 22 22 C 1.38813 * 119.99650 * 331.44195 * 20 19 18 23 23 N 1.31624 * 119.99972 * 347.33612 * 22 20 19 24 24 Si 1.86804 * 119.99821 * 167.33630 * 22 20 19 25 25 H 1.48501 * 109.47106 * 180.02562 * 24 22 20 26 26 H 1.48495 * 109.47134 * 299.99835 * 24 22 20 27 27 H 1.48496 * 109.47043 * 60.00246 * 24 22 20 28 28 C 1.43427 * 118.92907 * 289.84013 * 19 18 17 29 29 C 1.54405 * 116.38943 * 91.45416 * 28 19 18 30 30 H 1.08993 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47225 * 300.00356 * 1 2 3 32 32 H 1.09004 * 109.46404 * 59.99767 * 1 2 3 33 33 H 1.09003 * 109.47170 * 240.00019 * 2 1 3 34 34 H 1.08998 * 109.47219 * 119.99928 * 2 1 3 35 35 H 1.08004 * 119.81017 * 359.97438 * 7 6 4 36 36 H 1.09000 * 109.46596 * 270.30354 * 9 8 7 37 37 H 1.08999 * 109.47434 * 30.30023 * 9 8 7 38 38 H 1.09000 * 109.46799 * 150.30285 * 9 8 7 39 39 H 1.08006 * 119.10308 * 179.68343 * 10 8 7 40 40 H 1.08005 * 120.32589 * 179.97438 * 11 10 8 41 41 H 1.08994 * 110.24999 * 99.05508 * 16 14 3 42 42 H 1.08998 * 110.24593 * 336.99597 * 16 14 3 43 43 H 1.08997 * 108.52141 * 149.34545 * 17 16 14 44 44 H 1.09004 * 108.52169 * 31.83010 * 17 16 14 45 45 H 1.09004 * 109.84740 * 298.89993 * 18 17 16 46 46 H 1.09002 * 109.90077 * 177.94735 * 18 17 16 47 47 H 0.97006 * 119.99542 * 179.97438 * 23 22 20 48 48 H 1.08998 * 108.16446 * 213.03442 * 28 19 18 49 49 H 1.09002 * 108.16359 * 329.59889 * 28 19 18 50 50 H 1.09006 * 109.44646 * 198.44001 * 29 28 19 51 51 H 1.08999 * 109.23906 * 78.74087 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2620 2.0099 -1.1670 5 8 2.7409 3.1278 -1.1671 6 6 1.9484 1.3429 -2.4422 7 6 2.5024 0.1187 -2.7563 8 7 2.2044 -0.4833 -3.9198 9 6 2.8068 -1.7857 -4.2152 10 6 1.3715 0.0735 -4.8332 11 6 0.7840 1.2692 -4.6233 12 6 1.0412 1.9669 -3.4175 13 8 0.5266 3.0515 -3.1952 14 6 2.2419 2.0791 1.2686 15 1 2.0020 1.4086 2.0938 16 6 3.6851 2.4820 1.3631 17 6 4.0681 2.2775 2.8253 18 6 3.8390 3.4449 3.6757 19 7 2.3802 3.7900 3.5868 20 6 1.5498 3.5827 4.6557 21 1 0.6781 4.2058 4.7912 22 6 1.8284 2.5717 5.5652 23 7 2.7326 1.6593 5.2784 24 14 0.9199 2.5061 7.1962 25 1 1.3972 1.3400 7.9821 26 1 1.1786 3.7547 7.9573 27 1 -0.5376 2.3718 6.9458 28 6 1.8695 4.3348 2.3622 29 6 1.3186 3.3203 1.3368 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.1759 -0.3602 -2.0609 36 1 3.7557 -1.6385 -4.7310 37 1 2.9792 -2.3259 -3.2843 38 1 2.1335 -2.3617 -4.8501 39 1 1.1727 -0.4551 -5.7538 40 1 0.1246 1.6909 -5.3675 41 1 3.8034 3.5292 1.0850 42 1 4.2964 1.8481 0.7208 43 1 5.1253 2.0164 2.8730 44 1 3.4905 1.4421 3.2210 45 1 4.4397 4.2833 3.3230 46 1 4.1014 3.2097 4.7072 47 1 2.9276 0.9530 5.9141 48 1 1.0678 5.0310 2.6083 49 1 2.6683 4.9008 1.8829 50 1 1.2693 3.7884 0.3536 51 1 0.3185 3.0104 1.6399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998058078.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:04 Heat of formation + Delta-G solvation = 14.130882 kcal Electronic energy + Delta-G solvation = -32818.989928 eV Core-core repulsion = 28720.755909 eV Total energy + Delta-G solvation = -4098.234019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.28760 -39.65080 -37.96317 -37.11766 -35.43727 -33.26905 -32.72196 -31.87084 -31.39035 -30.66731 -29.12960 -27.29809 -26.02821 -24.98003 -24.01679 -23.25820 -22.92962 -22.62243 -20.04944 -19.72750 -18.73509 -17.66104 -17.40427 -16.95323 -16.64891 -16.10607 -15.65965 -15.44599 -14.97629 -14.64532 -14.38286 -14.13781 -13.89153 -13.73335 -13.68918 -13.51186 -13.39473 -13.07698 -13.00762 -12.79413 -12.37401 -12.30597 -12.23323 -12.04032 -11.81024 -11.58816 -11.21265 -11.11477 -10.98120 -10.76871 -10.43129 -10.33953 -9.92108 -9.87871 -9.75788 -9.62939 -9.57911 -9.32345 -9.19820 -8.94373 -8.36190 -8.16613 -7.98068 -6.51939 -5.69902 -3.15714 0.86152 1.12605 2.11592 3.03472 3.38935 3.42873 3.47083 3.50291 3.72996 3.95602 4.14255 4.40576 4.51549 4.54651 4.57014 4.81967 4.90950 5.02099 5.11176 5.36814 5.38781 5.45759 5.51783 5.57132 5.59899 5.78944 5.81072 5.94770 6.00785 6.15946 6.21879 6.32777 6.33870 6.37680 6.54004 6.54833 6.60046 6.64995 6.83031 6.88061 7.01773 7.10875 7.16278 7.23359 7.41130 7.45753 7.72440 7.83924 7.93645 8.07113 8.10047 8.56627 8.69038 9.30747 9.96165 10.53140 11.36339 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018217 B = 0.003085 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.676854 B = 9075.085787 C = 9332.031401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.607 5.607 4 C 0.578 3.422 5 O -0.513 6.513 6 C -0.279 4.279 7 C 0.152 3.848 8 N -0.477 5.477 9 C 0.056 3.944 10 C 0.130 3.870 11 C -0.273 4.273 12 C 0.408 3.592 13 O -0.494 6.494 14 C 0.168 3.832 15 H 0.098 0.902 16 C -0.113 4.113 17 C -0.131 4.131 18 C 0.168 3.832 19 N -0.590 5.590 20 C -0.242 4.242 21 H 0.063 0.937 22 C 0.003 3.997 23 N -0.905 5.905 24 Si 0.902 3.098 25 H -0.292 1.292 26 H -0.286 1.286 27 H -0.285 1.285 28 C 0.164 3.836 29 C -0.149 4.149 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.169 0.831 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.024 0.976 44 H 0.102 0.898 45 H 0.004 0.996 46 H 0.086 0.914 47 H 0.251 0.749 48 H 0.030 0.970 49 H 0.030 0.970 50 H 0.063 0.937 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -14.328 -20.903 25.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.341 5.341 4 C 0.365 3.635 5 O -0.388 6.388 6 C -0.289 4.289 7 C 0.023 3.977 8 N -0.165 5.165 9 C -0.085 4.085 10 C 0.005 3.995 11 C -0.298 4.298 12 C 0.295 3.705 13 O -0.376 6.376 14 C 0.067 3.933 15 H 0.116 0.884 16 C -0.151 4.151 17 C -0.170 4.170 18 C 0.045 3.955 19 N -0.312 5.312 20 C -0.372 4.372 21 H 0.081 0.919 22 C -0.195 4.195 23 N -0.551 5.551 24 Si 0.732 3.268 25 H -0.218 1.218 26 H -0.212 1.212 27 H -0.211 1.211 28 C 0.034 3.966 29 C -0.191 4.191 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.186 0.814 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.180 0.820 40 H 0.169 0.831 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.120 0.880 45 H 0.022 0.978 46 H 0.104 0.896 47 H 0.061 0.939 48 H 0.049 0.951 49 H 0.049 0.951 50 H 0.082 0.918 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.220 -13.451 -20.674 24.694 hybrid contribution -0.594 -0.571 0.688 1.074 sum 0.626 -14.021 -19.985 24.422 Atomic orbital electron populations 1.22170 0.96080 1.01483 1.02978 1.21671 0.94782 0.83535 1.02193 1.48509 1.65373 1.13626 1.06559 1.17423 0.78314 0.85406 0.82406 1.90784 1.42570 1.18604 1.86845 1.22639 1.08690 0.97134 1.00467 1.22082 0.96412 0.92376 0.86789 1.42608 1.39340 1.19294 1.15233 1.22456 0.99853 0.82053 1.04163 1.21653 0.90026 0.94857 0.92991 1.22405 1.08035 0.97167 1.02146 1.18194 0.80519 0.86391 0.85409 1.90816 1.47958 1.20426 1.78435 1.21344 0.95490 0.94363 0.82111 0.88446 1.21341 0.94613 1.01563 0.97570 1.21011 0.99082 1.03767 0.93103 1.20087 0.82981 0.92219 1.00206 1.44214 1.03999 1.74731 1.08212 1.19198 1.06670 1.10231 1.01146 0.91898 1.25018 0.99253 0.95361 0.99826 1.69894 1.35796 1.14590 1.34837 0.86384 0.79397 0.76873 0.84139 1.21798 1.21226 1.21148 1.20220 0.96252 0.93284 0.86816 1.23127 0.98099 0.97411 1.00446 0.92228 0.91579 0.92802 0.91593 0.90022 0.81425 0.90226 0.89036 0.89024 0.82020 0.83068 0.91399 0.93766 0.95719 0.87966 0.97801 0.89617 0.93889 0.95143 0.95131 0.91811 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.10 1.31 5.86 -4.04 -0.02 1.29 16 3 N -0.61 -10.45 2.29 -167.94 -0.39 -10.83 16 4 C 0.58 10.71 6.08 -12.58 -0.08 10.64 16 5 O -0.51 -11.70 14.32 5.26 0.08 -11.63 16 6 C -0.28 -4.07 5.21 -102.71 -0.53 -4.60 16 7 C 0.15 1.36 7.92 -16.54 -0.13 1.23 16 8 N -0.48 -2.67 2.97 -124.39 -0.37 -3.04 16 9 C 0.06 0.05 10.52 59.85 0.63 0.68 16 10 C 0.13 0.77 10.17 -17.09 -0.17 0.59 16 11 C -0.27 -2.83 10.01 -39.47 -0.40 -3.22 16 12 C 0.41 6.55 6.97 -34.69 -0.24 6.31 16 13 O -0.49 -10.51 17.52 4.83 0.08 -10.42 16 14 C 0.17 3.44 2.30 -68.39 -0.16 3.28 16 15 H 0.10 2.21 6.47 -51.93 -0.34 1.87 16 16 C -0.11 -2.34 4.11 -28.40 -0.12 -2.46 16 17 C -0.13 -2.91 5.00 -30.19 -0.15 -3.06 16 18 C 0.17 4.11 5.24 -5.21 -0.03 4.08 16 19 N -0.59 -15.15 2.60 -175.41 -0.46 -15.61 16 20 C -0.24 -6.68 9.61 -15.06 -0.14 -6.82 16 21 H 0.06 1.74 7.86 -52.49 -0.41 1.33 16 22 C 0.00 0.08 5.04 -17.43 -0.09 -0.01 16 23 N -0.91 -24.64 9.19 55.49 0.51 -24.13 16 24 Si 0.90 21.64 29.57 -169.99 -5.03 16.62 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.16 3.88 5.13 -4.93 -0.03 3.85 16 29 C -0.15 -3.34 5.78 -25.02 -0.14 -3.49 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.63 4.13 -51.93 -0.21 0.41 16 34 H 0.08 1.03 7.93 -51.93 -0.41 0.62 16 35 H 0.17 1.11 6.97 -52.48 -0.37 0.74 16 36 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 37 H 0.09 0.00 7.96 -51.93 -0.41 -0.42 16 38 H 0.09 -0.10 7.96 -51.93 -0.41 -0.51 16 39 H 0.16 0.24 7.97 -52.48 -0.42 -0.18 16 40 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 41 H 0.07 1.54 5.95 -51.93 -0.31 1.23 16 42 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 2.51 5.07 -51.93 -0.26 2.25 16 45 H 0.00 0.09 8.13 -51.93 -0.42 -0.33 16 46 H 0.09 2.28 6.24 -51.93 -0.32 1.96 16 47 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 48 H 0.03 0.72 8.00 -51.93 -0.42 0.31 16 49 H 0.03 0.72 6.89 -51.93 -0.36 0.36 16 50 H 0.06 1.51 6.16 -51.93 -0.32 1.19 16 51 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -37.26 391.73 -8.98 -46.25 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.90 Total: 0.42 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.42 Total: 6.47 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.70 Total: -53.61 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.16 Total: -22.05 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.26 -8.98 -46.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998058078.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.380 kcal (2) G-P(sol) polarization free energy of solvation -37.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds