Wall clock time and date at job start Wed Apr 1 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47068 * 2 1 4 4 C 1.34779 * 120.00048 * 267.66838 * 3 2 1 5 5 O 1.21590 * 120.00039 * 175.10335 * 4 3 2 6 6 C 1.47518 * 120.00101 * 355.10594 * 4 3 2 7 7 C 1.39988 * 120.60100 * 303.71633 * 6 4 3 8 8 C 1.38336 * 118.35118 * 180.02562 * 7 6 4 9 9 C 1.38354 * 119.45878 * 0.02562 * 8 7 6 10 10 N 1.31882 * 121.18625 * 359.97418 * 9 8 7 11 11 C 1.32238 * 121.80100 * 359.74842 * 10 9 8 12 12 O 1.35420 * 119.80142 * 180.28708 * 11 10 9 13 13 C 1.42899 * 117.00204 * 0.25199 * 12 11 10 14 14 C 1.46503 * 120.00141 * 87.67592 * 3 2 1 15 15 H 1.09007 * 109.16160 * 0.65887 * 14 3 2 16 16 C 1.50121 * 109.21232 * 119.99555 * 14 3 2 17 17 C 1.52529 * 105.41465 * 218.02788 * 16 14 3 18 18 C 1.46237 * 114.27820 * 270.59384 * 17 16 14 19 19 N 1.50171 * 107.53136 * 58.40805 * 18 17 16 20 20 C 1.36935 * 120.53519 * 109.56548 * 19 18 17 21 21 H 1.07994 * 120.00205 * 216.84030 * 20 19 18 22 22 C 1.38810 * 119.99688 * 36.84211 * 20 19 18 23 23 N 1.31622 * 120.00011 * 199.12089 * 22 20 19 24 24 Si 1.86804 * 120.00376 * 19.12570 * 22 20 19 25 25 H 1.48503 * 109.46547 * 268.05703 * 24 22 20 26 26 H 1.48497 * 109.47228 * 28.05551 * 24 22 20 27 27 H 1.48492 * 109.47264 * 148.05898 * 24 22 20 28 28 C 1.43434 * 118.92501 * 289.83965 * 19 18 17 29 29 C 1.54412 * 116.38856 * 91.45974 * 28 19 18 30 30 H 1.09001 * 109.46852 * 300.00142 * 1 2 3 31 31 H 1.08997 * 109.47136 * 59.99774 * 1 2 3 32 32 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47101 * 240.00124 * 2 1 3 34 34 H 1.08997 * 109.47136 * 120.00226 * 2 1 3 35 35 H 1.08005 * 120.81875 * 359.97438 * 7 6 4 36 36 H 1.08000 * 120.26618 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.40628 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.47098 * 300.00169 * 13 12 11 39 39 H 1.08999 * 109.46938 * 59.99560 * 13 12 11 40 40 H 1.08998 * 109.47513 * 179.97438 * 13 12 11 41 41 H 1.08999 * 110.24886 * 99.05643 * 16 14 3 42 42 H 1.08998 * 110.24966 * 337.00326 * 16 14 3 43 43 H 1.09003 * 108.51889 * 149.35061 * 17 16 14 44 44 H 1.08998 * 108.51766 * 31.83673 * 17 16 14 45 45 H 1.09004 * 109.84167 * 298.90088 * 18 17 16 46 46 H 1.08996 * 109.90142 * 177.94788 * 18 17 16 47 47 H 0.96996 * 120.00315 * 180.02562 * 23 22 20 48 48 H 1.08998 * 108.15765 * 213.02924 * 28 19 18 49 49 H 1.08998 * 108.16446 * 329.60311 * 28 19 18 50 50 H 1.08995 * 109.44165 * 198.43781 * 29 28 19 51 51 H 1.08991 * 109.23624 * 78.73482 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2877 2.0007 -1.1662 5 8 2.6073 3.1739 -1.1718 6 6 2.1948 1.2556 -2.4360 7 6 2.9350 0.0833 -2.6301 8 6 2.8129 -0.5780 -3.8390 9 6 1.9722 -0.0675 -4.8120 10 7 1.2839 1.0388 -4.6080 11 6 1.3598 1.7066 -3.4691 12 8 0.6305 2.8352 -3.3009 13 6 -0.2000 3.2396 -4.3912 14 6 2.2140 2.0890 1.2677 15 1 1.9560 1.4242 2.0922 16 6 3.6547 2.4926 1.3909 17 6 4.0054 2.2996 2.8627 18 6 3.7576 3.4736 3.6988 19 7 2.3012 3.8178 3.5750 20 6 1.4474 3.6187 4.6270 21 1 0.4363 3.2851 4.4462 22 6 1.8816 3.8457 5.9257 23 7 1.2305 3.3158 6.9394 24 14 3.3899 4.9035 6.2350 25 1 4.5969 4.0401 6.2908 26 1 3.5372 5.8895 5.1344 27 1 3.2349 5.6216 7.5254 28 6 1.8177 4.3530 2.3352 29 6 1.2894 3.3305 1.3059 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.5858 -0.2948 -1.8556 36 1 3.3701 -1.4850 -4.0220 37 1 1.8773 -0.5848 -5.7554 38 1 0.4176 3.4184 -5.2715 39 1 -0.9229 2.4533 -4.6083 40 1 -0.7283 4.1552 -4.1255 41 1 3.7792 3.5377 1.1073 42 1 4.2800 1.8539 0.7671 43 1 5.0613 2.0390 2.9357 44 1 3.4191 1.4673 3.2520 45 1 4.3661 4.3092 3.3529 46 1 3.9973 3.2465 4.7375 47 1 1.5336 3.4747 7.8470 48 1 1.0107 5.0510 2.5582 49 1 2.6269 4.9153 1.8693 50 1 1.2619 3.7909 0.3183 51 1 0.2829 3.0229 1.5893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998103620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:54 Heat of formation + Delta-G solvation = 9.749157 kcal Electronic energy + Delta-G solvation = -32661.531253 eV Core-core repulsion = 28563.107228 eV Total energy + Delta-G solvation = -4098.424025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.24323 -39.82667 -38.15529 -37.60204 -35.74063 -33.56197 -32.66264 -31.72274 -31.31229 -31.02028 -29.54503 -27.53907 -26.29074 -25.12939 -24.38085 -23.37540 -23.06576 -22.79871 -20.60530 -20.04121 -18.92531 -18.53378 -17.35468 -16.99748 -16.74870 -16.28493 -15.85548 -15.54879 -15.43210 -14.80091 -14.55847 -14.45587 -14.17566 -13.98258 -13.76187 -13.58735 -13.54642 -13.17429 -12.92567 -12.84612 -12.54528 -12.49906 -12.21449 -11.98745 -11.84066 -11.61124 -11.53493 -11.48390 -11.21849 -11.15143 -10.82114 -10.40541 -10.30364 -10.18311 -10.14658 -10.08424 -9.72803 -9.62539 -9.45465 -9.24456 -8.79486 -8.52888 -8.38392 -6.76380 -5.93155 -3.34753 0.56210 0.91995 2.69822 2.85297 3.07872 3.34661 3.46503 3.51467 3.58854 3.93761 4.41599 4.46955 4.58143 4.68397 4.84833 4.87952 4.95046 5.05940 5.07730 5.10353 5.16989 5.32066 5.35297 5.40602 5.44363 5.53195 5.56497 5.62396 5.70355 5.74160 5.79079 5.94694 5.98227 6.00526 6.09484 6.18639 6.26688 6.37816 6.42804 6.49022 6.65825 6.74745 6.81502 6.90558 6.94999 6.99290 7.03993 7.09088 7.43988 7.60526 8.10116 8.33306 8.46746 9.03587 9.77099 10.23187 11.22956 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.002986 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.554398 B = 9374.184702 C = 9598.152029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.569 3.431 5 O -0.512 6.512 6 C -0.192 4.192 7 C -0.014 4.014 8 C -0.216 4.216 9 C 0.154 3.846 10 N -0.542 5.542 11 C 0.360 3.640 12 O -0.289 6.289 13 C 0.039 3.961 14 C 0.163 3.837 15 H 0.092 0.908 16 C -0.114 4.114 17 C -0.130 4.130 18 C 0.120 3.880 19 N -0.602 5.602 20 C -0.260 4.260 21 H 0.079 0.921 22 C 0.031 3.969 23 N -0.908 5.908 24 Si 0.883 3.117 25 H -0.288 1.288 26 H -0.269 1.269 27 H -0.304 1.304 28 C 0.162 3.838 29 C -0.151 4.151 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.163 0.837 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.071 0.929 47 H 0.262 0.738 48 H 0.045 0.955 49 H 0.031 0.969 50 H 0.075 0.925 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 -10.602 -23.599 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.337 5.337 4 C 0.355 3.645 5 O -0.387 6.387 6 C -0.198 4.198 7 C -0.040 4.040 8 C -0.237 4.237 9 C -0.003 4.003 10 N -0.266 5.266 11 C 0.181 3.819 12 O -0.194 6.194 13 C -0.056 4.056 14 C 0.062 3.938 15 H 0.110 0.890 16 C -0.153 4.153 17 C -0.170 4.170 18 C -0.004 4.004 19 N -0.325 5.325 20 C -0.389 4.389 21 H 0.096 0.904 22 C -0.168 4.168 23 N -0.551 5.551 24 Si 0.713 3.287 25 H -0.216 1.216 26 H -0.194 1.194 27 H -0.232 1.232 28 C 0.034 3.966 29 C -0.192 4.192 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.180 0.820 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.049 0.951 50 H 0.094 0.906 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.392 -9.421 -23.788 25.624 hybrid contribution 1.126 -0.082 0.640 1.298 sum 2.518 -9.504 -23.148 25.149 Atomic orbital electron populations 1.22169 0.95822 1.01906 1.02807 1.21735 0.94878 0.82981 1.02951 1.48403 1.64997 1.13939 1.06340 1.17728 0.77761 0.86372 0.82681 1.90790 1.46354 1.15025 1.86540 1.20044 1.03695 0.99442 0.96607 1.21561 0.94557 0.90632 0.97250 1.21906 1.03659 1.03324 0.94783 1.22581 0.89427 0.89581 0.98670 1.67412 1.26924 1.10697 1.21538 1.19739 0.88120 0.85850 0.88225 1.86362 1.54738 1.36700 1.41552 1.22928 0.93419 1.00453 0.88784 1.21333 0.95539 0.94385 0.82528 0.88999 1.21323 0.95040 1.02644 0.96254 1.20887 0.99881 1.01171 0.95021 1.20733 0.86119 0.94640 0.98883 1.44284 1.03848 1.74179 1.10210 1.18796 0.96026 1.39847 0.84211 0.90383 1.25439 0.97662 0.98167 0.95567 1.69844 1.41966 1.44466 0.98780 0.86860 0.83025 0.82057 0.76737 1.21559 1.19355 1.23200 1.20175 0.97350 0.92809 0.86292 1.23157 0.98088 0.96874 1.01090 0.91551 0.92961 0.91815 0.90588 0.90063 0.83599 0.83925 0.82029 0.92162 0.92250 0.88303 0.90395 0.92717 0.93718 0.91686 0.94810 0.91085 0.92843 0.93622 0.95107 0.90607 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.24 37.16 0.38 -1.50 16 2 C 0.10 1.08 5.94 -4.04 -0.02 1.05 16 3 N -0.60 -8.65 2.29 -167.86 -0.38 -9.04 16 4 C 0.57 8.82 6.01 -12.48 -0.08 8.75 16 5 O -0.51 -9.76 14.02 4.75 0.07 -9.69 16 6 C -0.19 -2.45 4.91 -104.69 -0.51 -2.96 16 7 C -0.01 -0.13 7.67 -38.89 -0.30 -0.43 16 8 C -0.22 -1.51 10.09 -39.50 -0.40 -1.91 16 9 C 0.15 1.21 11.17 -17.49 -0.20 1.01 16 10 N -0.54 -5.96 9.21 -12.98 -0.12 -6.08 16 11 C 0.36 4.72 7.50 -16.61 -0.12 4.60 16 12 O -0.29 -4.05 9.76 -18.48 -0.18 -4.23 16 13 C 0.04 0.38 10.38 101.05 1.05 1.43 16 14 C 0.16 2.77 2.30 -68.39 -0.16 2.61 16 15 H 0.09 1.66 6.49 -51.92 -0.34 1.32 16 16 C -0.11 -1.95 4.28 -28.40 -0.12 -2.08 16 17 C -0.13 -2.37 5.20 -30.19 -0.16 -2.53 16 18 C 0.12 2.60 4.07 -5.20 -0.02 2.58 16 19 N -0.60 -14.36 2.19 -175.40 -0.38 -14.75 16 20 C -0.26 -7.24 9.96 -15.06 -0.15 -7.39 16 21 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 22 C 0.03 0.90 5.27 -17.43 -0.09 0.81 16 23 N -0.91 -27.74 13.97 55.49 0.78 -26.97 16 24 Si 0.88 22.55 24.90 -169.99 -4.23 18.32 16 25 H -0.29 -7.06 6.56 56.52 0.37 -6.69 16 26 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 28 C 0.16 3.47 5.13 -4.92 -0.03 3.45 16 29 C -0.15 -2.87 5.77 -25.02 -0.14 -3.01 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.68 4.51 -51.92 -0.23 0.45 16 34 H 0.08 0.83 7.96 -51.93 -0.41 0.42 16 35 H 0.15 1.07 7.62 -52.48 -0.40 0.67 16 36 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.16 0.71 8.06 -52.48 -0.42 0.28 16 38 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 39 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.47 6.06 -51.93 -0.31 1.16 16 42 H 0.05 0.86 7.86 -51.93 -0.41 0.45 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.23 6.93 -51.93 -0.36 0.87 16 45 H 0.03 0.71 8.11 -51.93 -0.42 0.29 16 46 H 0.07 1.68 4.29 -51.93 -0.22 1.45 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.05 1.01 8.00 -51.93 -0.42 0.59 16 49 H 0.03 0.64 6.89 -51.93 -0.36 0.29 16 50 H 0.08 1.49 5.85 -51.93 -0.30 1.19 16 51 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -34.06 391.10 -7.64 -41.69 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.00 Total: 0.38 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.07 Total: 4.48 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.11 Total: -56.83 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.11 Total: -13.92 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.23 Total: 18.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.06 -7.64 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998103620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.441 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds