Wall clock time and date at job start Wed Apr 1 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47068 * 2 1 4 4 C 1.34779 * 120.00048 * 267.66838 * 3 2 1 5 5 O 1.21590 * 120.00039 * 175.10335 * 4 3 2 6 6 C 1.47518 * 120.00101 * 355.10594 * 4 3 2 7 7 C 1.39988 * 120.60100 * 303.71633 * 6 4 3 8 8 C 1.38336 * 118.35118 * 180.02562 * 7 6 4 9 9 C 1.38354 * 119.45878 * 0.02562 * 8 7 6 10 10 N 1.31882 * 121.18625 * 359.97418 * 9 8 7 11 11 C 1.32238 * 121.80100 * 359.74842 * 10 9 8 12 12 O 1.35420 * 119.80142 * 180.28708 * 11 10 9 13 13 C 1.42899 * 117.00204 * 0.25199 * 12 11 10 14 14 C 1.46503 * 120.00141 * 87.67592 * 3 2 1 15 15 H 1.09007 * 109.16160 * 0.65887 * 14 3 2 16 16 C 1.50121 * 109.21232 * 119.99555 * 14 3 2 17 17 C 1.52529 * 105.41465 * 218.02788 * 16 14 3 18 18 C 1.46237 * 114.27820 * 270.59384 * 17 16 14 19 19 N 1.50171 * 107.53136 * 58.40805 * 18 17 16 20 20 C 1.36935 * 120.53519 * 109.56548 * 19 18 17 21 21 H 1.07994 * 120.00205 * 216.84030 * 20 19 18 22 22 C 1.38810 * 119.99688 * 36.84211 * 20 19 18 23 23 N 1.31622 * 120.00011 * 199.12089 * 22 20 19 24 24 Si 1.86804 * 120.00376 * 19.12570 * 22 20 19 25 25 H 1.48503 * 109.46547 * 268.05703 * 24 22 20 26 26 H 1.48497 * 109.47228 * 28.05551 * 24 22 20 27 27 H 1.48492 * 109.47264 * 148.05898 * 24 22 20 28 28 C 1.43434 * 118.92501 * 289.83965 * 19 18 17 29 29 C 1.54412 * 116.38856 * 91.45974 * 28 19 18 30 30 H 1.09001 * 109.46852 * 300.00142 * 1 2 3 31 31 H 1.08997 * 109.47136 * 59.99774 * 1 2 3 32 32 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47101 * 240.00124 * 2 1 3 34 34 H 1.08997 * 109.47136 * 120.00226 * 2 1 3 35 35 H 1.08005 * 120.81875 * 359.97438 * 7 6 4 36 36 H 1.08000 * 120.26618 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.40628 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.47098 * 300.00169 * 13 12 11 39 39 H 1.08999 * 109.46938 * 59.99560 * 13 12 11 40 40 H 1.08998 * 109.47513 * 179.97438 * 13 12 11 41 41 H 1.08999 * 110.24886 * 99.05643 * 16 14 3 42 42 H 1.08998 * 110.24966 * 337.00326 * 16 14 3 43 43 H 1.09003 * 108.51889 * 149.35061 * 17 16 14 44 44 H 1.08998 * 108.51766 * 31.83673 * 17 16 14 45 45 H 1.09004 * 109.84167 * 298.90088 * 18 17 16 46 46 H 1.08996 * 109.90142 * 177.94788 * 18 17 16 47 47 H 0.96996 * 120.00315 * 180.02562 * 23 22 20 48 48 H 1.08998 * 108.15765 * 213.02924 * 28 19 18 49 49 H 1.08998 * 108.16446 * 329.60311 * 28 19 18 50 50 H 1.08995 * 109.44165 * 198.43781 * 29 28 19 51 51 H 1.08991 * 109.23624 * 78.73482 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2877 2.0007 -1.1662 5 8 2.6073 3.1739 -1.1718 6 6 2.1948 1.2556 -2.4360 7 6 2.9350 0.0833 -2.6301 8 6 2.8129 -0.5780 -3.8390 9 6 1.9722 -0.0675 -4.8120 10 7 1.2839 1.0388 -4.6080 11 6 1.3598 1.7066 -3.4691 12 8 0.6305 2.8352 -3.3009 13 6 -0.2000 3.2396 -4.3912 14 6 2.2140 2.0890 1.2677 15 1 1.9560 1.4242 2.0922 16 6 3.6547 2.4926 1.3909 17 6 4.0054 2.2996 2.8627 18 6 3.7576 3.4736 3.6988 19 7 2.3012 3.8178 3.5750 20 6 1.4474 3.6187 4.6270 21 1 0.4363 3.2851 4.4462 22 6 1.8816 3.8457 5.9257 23 7 1.2305 3.3158 6.9394 24 14 3.3899 4.9035 6.2350 25 1 4.5969 4.0401 6.2908 26 1 3.5372 5.8895 5.1344 27 1 3.2349 5.6216 7.5254 28 6 1.8177 4.3530 2.3352 29 6 1.2894 3.3305 1.3059 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.5858 -0.2948 -1.8556 36 1 3.3701 -1.4850 -4.0220 37 1 1.8773 -0.5848 -5.7554 38 1 0.4176 3.4184 -5.2715 39 1 -0.9229 2.4533 -4.6083 40 1 -0.7283 4.1552 -4.1255 41 1 3.7792 3.5377 1.1073 42 1 4.2800 1.8539 0.7671 43 1 5.0613 2.0390 2.9357 44 1 3.4191 1.4673 3.2520 45 1 4.3661 4.3092 3.3529 46 1 3.9973 3.2465 4.7375 47 1 1.5336 3.4747 7.8470 48 1 1.0107 5.0510 2.5582 49 1 2.6269 4.9153 1.8693 50 1 1.2619 3.7909 0.3183 51 1 0.2829 3.0229 1.5893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998103620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:53 Heat of formation + Delta-G solvation = -13.392781 kcal Electronic energy + Delta-G solvation = -32662.534762 eV Core-core repulsion = 28563.107228 eV Total energy + Delta-G solvation = -4099.427535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.14616 -40.97265 -39.21960 -38.88657 -36.99189 -35.12358 -33.80973 -33.41240 -32.86357 -31.82682 -30.77639 -28.35824 -27.98665 -26.41065 -25.73181 -24.67617 -23.99947 -23.91801 -22.13241 -21.51429 -20.22232 -19.35516 -18.62290 -18.15408 -18.04039 -17.60967 -17.20703 -16.87656 -16.33029 -16.22291 -15.96185 -15.51732 -15.42196 -15.20405 -14.96014 -14.78529 -14.63131 -14.40693 -14.34486 -14.18773 -13.76704 -13.65214 -13.49486 -13.46646 -13.20825 -12.97401 -12.78598 -12.71064 -12.67983 -12.32682 -12.17332 -12.10771 -11.90001 -11.68466 -11.44800 -11.43916 -11.32360 -11.02121 -10.87709 -10.67790 -10.41362 -9.67766 -9.50294 -8.77544 -8.17002 -5.56043 -0.17560 0.22968 1.30467 1.43074 1.54761 1.62443 2.00558 2.07392 2.43822 2.71462 3.01517 3.20947 3.34756 3.52553 3.81491 3.88090 3.97979 3.99862 4.02603 4.18159 4.22790 4.31547 4.35761 4.36848 4.37297 4.38547 4.46527 4.48585 4.54586 4.66797 4.67976 4.72788 4.83241 4.85433 4.92414 4.93138 4.98779 5.04835 5.10490 5.12333 5.22173 5.25105 5.30574 5.38242 5.43439 5.49191 5.72721 5.95378 6.17162 6.20142 6.45201 6.75880 6.97744 7.18431 7.62660 8.11092 9.03013 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.002986 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.554398 B = 9374.184702 C = 9598.152029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 N -0.601 5.601 4 C 0.568 3.432 5 O -0.558 6.558 6 C -0.218 4.218 7 C -0.013 4.013 8 C -0.196 4.196 9 C 0.154 3.846 10 N -0.555 5.555 11 C 0.337 3.663 12 O -0.324 6.324 13 C 0.038 3.962 14 C 0.171 3.829 15 H 0.082 0.918 16 C -0.102 4.102 17 C -0.125 4.125 18 C 0.117 3.883 19 N -0.611 5.611 20 C -0.249 4.249 21 H 0.041 0.959 22 C -0.021 4.021 23 N -0.953 5.953 24 Si 0.945 3.055 25 H -0.267 1.267 26 H -0.266 1.266 27 H -0.310 1.310 28 C 0.163 3.837 29 C -0.138 4.138 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.167 0.833 36 H 0.186 0.814 37 H 0.201 0.799 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.055 0.945 47 H 0.262 0.738 48 H 0.028 0.972 49 H 0.039 0.961 50 H 0.069 0.931 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.300 -13.150 -26.076 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.333 5.333 4 C 0.357 3.643 5 O -0.436 6.436 6 C -0.224 4.224 7 C -0.039 4.039 8 C -0.215 4.215 9 C -0.003 4.003 10 N -0.279 5.279 11 C 0.158 3.842 12 O -0.230 6.230 13 C -0.056 4.056 14 C 0.069 3.931 15 H 0.100 0.900 16 C -0.140 4.140 17 C -0.164 4.164 18 C -0.006 4.006 19 N -0.335 5.335 20 C -0.379 4.379 21 H 0.058 0.942 22 C -0.216 4.216 23 N -0.598 5.598 24 Si 0.773 3.227 25 H -0.193 1.193 26 H -0.191 1.191 27 H -0.239 1.239 28 C 0.035 3.965 29 C -0.179 4.179 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.185 0.815 36 H 0.203 0.797 37 H 0.217 0.783 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.046 0.954 49 H 0.058 0.942 50 H 0.088 0.912 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.860 -12.005 -26.310 29.176 hybrid contribution 0.280 0.623 1.252 1.426 sum 4.141 -11.382 -25.059 27.832 Atomic orbital electron populations 1.22121 0.96195 1.03033 1.00839 1.21991 0.94519 0.81286 1.04900 1.48379 1.64737 1.15048 1.05160 1.18194 0.76489 0.85991 0.83670 1.90752 1.48477 1.17118 1.87298 1.19939 1.06019 1.01238 0.95248 1.21886 0.93851 0.89306 0.98855 1.22362 1.02350 1.03765 0.93056 1.23384 0.88176 0.88389 1.00330 1.67470 1.27889 1.11856 1.20672 1.19918 0.88906 0.86175 0.89177 1.86306 1.55628 1.37773 1.43282 1.23056 0.93270 1.01106 0.88186 1.21032 0.95146 0.93218 0.83747 0.90045 1.21197 0.95067 1.01985 0.95748 1.20753 1.01733 0.99025 0.94875 1.20836 0.84293 0.96602 0.98823 1.44352 1.04581 1.74691 1.09833 1.18634 0.95333 1.38438 0.85465 0.94156 1.26006 1.01021 0.99356 0.95248 1.69960 1.44331 1.46319 0.99195 0.85859 0.80454 0.80326 0.76036 1.19289 1.19085 1.23908 1.20200 0.97030 0.93286 0.85955 1.22931 0.97826 0.97516 0.99636 0.94175 0.94213 0.89109 0.87757 0.88824 0.81528 0.79682 0.78258 0.91873 0.91608 0.87273 0.92121 0.90550 0.90540 0.92531 0.93547 0.92673 0.92856 0.95403 0.94245 0.91213 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.24 71.98 0.74 -2.80 16 2 C 0.09 1.91 5.94 86.38 0.51 2.42 16 3 N -0.60 -16.83 2.29 -803.23 -1.84 -18.67 16 4 C 0.57 17.47 6.01 86.69 0.52 17.99 16 5 O -0.56 -21.70 14.02 -3.49 -0.05 -21.75 16 6 C -0.22 -5.29 4.91 -19.91 -0.10 -5.38 16 7 C -0.01 -0.20 7.67 22.72 0.17 -0.02 16 8 C -0.20 -1.75 10.09 22.32 0.23 -1.52 16 9 C 0.15 1.79 11.17 84.71 0.95 2.73 16 10 N -0.55 -11.15 9.21 -307.99 -2.84 -13.99 16 11 C 0.34 8.64 7.50 85.13 0.64 9.28 16 12 O -0.32 -9.39 9.76 -86.63 -0.85 -10.24 16 13 C 0.04 0.77 10.38 113.37 1.18 1.94 16 14 C 0.17 5.80 2.30 44.69 0.10 5.91 16 15 H 0.08 2.96 6.49 -2.38 -0.02 2.94 16 16 C -0.10 -3.34 4.28 29.51 0.13 -3.21 16 17 C -0.12 -4.31 5.20 28.36 0.15 -4.16 16 18 C 0.12 4.94 4.07 83.58 0.34 5.28 16 19 N -0.61 -29.54 2.19 -708.85 -1.55 -31.09 16 20 C -0.25 -14.33 9.96 84.03 0.84 -13.49 16 21 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 22 C -0.02 -1.21 5.27 84.86 0.45 -0.76 16 23 N -0.95 -59.85 13.97 21.65 0.30 -59.54 16 24 Si 0.94 46.89 24.90 68.60 1.71 48.60 16 25 H -0.27 -12.25 6.56 99.48 0.65 -11.59 16 26 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 28 C 0.16 7.19 5.13 87.43 0.45 7.64 16 29 C -0.14 -5.47 5.77 31.70 0.18 -5.29 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.53 4.51 -2.38 -0.01 1.52 16 34 H 0.09 1.69 7.96 -2.39 -0.02 1.67 16 35 H 0.17 1.68 7.62 -2.91 -0.02 1.66 16 36 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 37 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 38 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 39 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 2.24 6.06 -2.39 -0.01 2.22 16 42 H 0.08 2.19 7.86 -2.39 -0.02 2.17 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.06 2.07 6.93 -2.39 -0.02 2.05 16 45 H 0.05 1.85 8.11 -2.39 -0.02 1.83 16 46 H 0.06 2.51 4.29 -2.39 -0.01 2.50 16 47 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 48 H 0.03 1.29 8.00 -2.39 -0.02 1.27 16 49 H 0.04 1.67 6.89 -2.39 -0.02 1.65 16 50 H 0.07 2.88 5.85 -2.39 -0.01 2.87 16 51 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -78.48 391.10 3.23 -75.26 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.87 Total: 14.87 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 7.47 Total: 16.55 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -5.93 Total: -123.29 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.89 Total: -31.99 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.71 Total: 48.60 kcal Total: -78.48 3.23 -75.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998103620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.864 kcal (2) G-P(sol) polarization free energy of solvation -78.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds