Wall clock time and date at job start Wed Apr 1 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47527 * 2 1 4 4 C 1.34778 * 119.99964 * 265.11826 * 3 2 1 5 5 O 1.21590 * 120.00034 * 39.05908 * 4 3 2 6 6 C 1.47524 * 119.99697 * 219.06547 * 4 3 2 7 7 C 1.39992 * 120.59684 * 335.92756 * 6 4 3 8 8 C 1.38335 * 118.34878 * 179.78247 * 7 6 4 9 9 C 1.38355 * 119.45644 * 0.49643 * 8 7 6 10 10 N 1.31881 * 121.18791 * 359.74519 * 9 8 7 11 11 C 1.32241 * 121.79855 * 359.97438 * 10 9 8 12 12 O 1.35417 * 119.79645 * 180.02562 * 11 10 9 13 13 C 1.42897 * 117.00577 * 359.97438 * 12 11 10 14 14 C 1.46495 * 119.99697 * 85.10987 * 3 2 1 15 15 H 1.08994 * 108.45297 * 331.76801 * 14 3 2 16 16 C 1.52580 * 108.51405 * 214.21969 * 14 3 2 17 17 C 1.50881 * 109.35848 * 153.73486 * 16 14 3 18 18 C 1.53944 * 110.09068 * 91.88985 * 17 16 14 19 19 N 1.47610 * 112.14751 * 319.43232 * 18 17 16 20 20 C 1.36933 * 118.64451 * 137.88770 * 19 18 17 21 21 H 1.08000 * 119.99660 * 225.44114 * 20 19 18 22 22 C 1.38814 * 119.99820 * 45.44926 * 20 19 18 23 23 N 1.31621 * 119.99738 * 168.42214 * 22 20 19 24 24 Si 1.86795 * 120.00158 * 348.41617 * 22 20 19 25 25 H 1.48498 * 109.47324 * 81.72216 * 24 22 20 26 26 H 1.48491 * 109.47345 * 201.72751 * 24 22 20 27 27 H 1.48512 * 109.46890 * 321.72455 * 24 22 20 28 28 C 1.44584 * 122.70853 * 317.87167 * 19 18 17 29 29 C 1.47098 * 108.51338 * 89.45775 * 14 3 2 30 30 H 1.09000 * 109.47073 * 60.00038 * 1 2 3 31 31 H 1.09002 * 109.47338 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46907 * 299.99986 * 1 2 3 33 33 H 1.09003 * 109.46584 * 120.00120 * 2 1 3 34 34 H 1.09001 * 109.47182 * 239.99570 * 2 1 3 35 35 H 1.07997 * 120.82574 * 0.02722 * 7 6 4 36 36 H 1.07999 * 120.27130 * 180.23760 * 8 7 6 37 37 H 1.07998 * 119.40508 * 179.72191 * 9 8 7 38 38 H 1.08996 * 109.47677 * 180.02562 * 13 12 11 39 39 H 1.08999 * 109.47100 * 300.00037 * 13 12 11 40 40 H 1.09000 * 109.47188 * 59.99582 * 13 12 11 41 41 H 1.08997 * 109.48984 * 273.70723 * 16 14 3 42 42 H 1.09003 * 109.48333 * 33.77319 * 16 14 3 43 43 H 1.08999 * 109.36851 * 331.69834 * 17 16 14 44 44 H 1.08998 * 109.25905 * 212.01169 * 17 16 14 45 45 H 1.09005 * 108.94633 * 198.75003 * 18 17 16 46 46 H 1.09001 * 108.95044 * 80.11993 * 18 17 16 47 47 H 0.97002 * 119.99766 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.44791 * 330.68619 * 28 19 18 49 49 H 1.08998 * 109.42587 * 210.74347 * 28 19 18 50 50 H 1.09001 * 109.32458 * 304.31897 * 29 14 3 51 51 H 1.08997 * 109.32544 * 63.79167 * 29 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3368 1.9833 -1.1630 5 8 1.6538 1.7962 -2.1514 6 6 3.5139 2.8694 -1.2367 7 6 4.0078 3.4954 -0.0860 8 6 5.1169 4.3131 -0.2077 9 6 5.6944 4.4956 -1.4517 10 7 5.2096 3.9000 -2.5238 11 6 4.1552 3.1042 -2.4620 12 8 3.6916 2.5128 -3.5885 13 6 4.3893 2.7943 -4.8034 14 6 2.1607 2.1077 1.2641 15 1 1.4351 1.7105 1.9739 16 6 1.8369 3.5781 1.0169 17 6 1.3463 4.2046 2.2988 18 6 2.5262 4.8228 3.0706 19 7 3.7293 3.9687 3.0254 20 6 4.9480 4.5613 2.8283 21 1 5.6457 4.1388 2.1204 22 6 5.2866 5.7049 3.5386 23 7 6.5272 6.1443 3.5257 24 14 3.9816 6.6201 4.5126 25 1 3.7837 5.9526 5.8242 26 1 4.4196 8.0219 4.7316 27 1 2.7036 6.6134 3.7559 28 6 3.6741 2.5323 3.1808 29 6 3.5119 1.8654 1.7926 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.5371 3.3405 0.8735 36 1 5.5262 4.8083 0.6605 37 1 6.5576 5.1378 -1.5465 38 1 3.9159 2.2594 -5.6267 39 1 4.3574 3.8658 -5.0008 40 1 5.4266 2.4730 -4.7096 41 1 2.7343 4.0962 0.6789 42 1 1.0622 3.6565 0.2541 43 1 0.8711 3.4416 2.9153 44 1 0.6206 4.9832 2.0637 45 1 2.2327 4.9658 4.1106 46 1 2.7646 5.7932 2.6351 47 1 6.7637 6.9437 4.0218 48 1 2.8255 2.2679 3.8119 49 1 4.5955 2.1823 3.6461 50 1 3.6752 0.7918 1.8867 51 1 4.2481 2.2808 1.1046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998103623.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:57 Heat of formation + Delta-G solvation = 120.745937 kcal Electronic energy + Delta-G solvation = -34208.665375 eV Core-core repulsion = 30115.054532 eV Total energy + Delta-G solvation = -4093.610843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.81319 -39.60331 -38.38674 -37.34094 -35.65695 -33.80525 -32.56282 -31.91981 -31.17049 -30.58393 -29.63029 -27.11508 -26.42716 -25.22018 -24.31175 -23.52475 -23.18775 -22.44172 -20.82128 -20.01321 -18.81081 -18.00423 -17.37468 -16.88429 -16.37410 -16.13100 -15.86813 -15.69769 -15.19466 -14.90837 -14.45809 -14.10758 -13.96064 -13.87327 -13.81186 -13.60130 -13.41499 -12.91104 -12.86871 -12.50829 -12.30978 -12.18822 -12.10687 -12.03887 -11.91697 -11.69783 -11.49849 -11.24815 -11.13871 -10.99739 -10.79804 -10.64399 -10.48808 -10.24051 -10.03502 -9.68127 -9.38751 -9.13775 -8.95264 -8.75643 -8.45855 -8.30603 -8.09494 -6.84618 -6.10977 -3.73133 1.04257 1.71537 2.93744 3.17657 3.22263 3.31806 3.35124 3.41948 4.15320 4.40724 4.52800 4.69846 4.85793 4.90755 5.10769 5.18229 5.18685 5.29945 5.33856 5.40615 5.41487 5.43473 5.43971 5.48587 5.60038 5.60997 5.64935 5.69795 5.72452 5.88076 5.89335 5.97760 6.04314 6.09006 6.16954 6.20876 6.27998 6.34939 6.41971 6.52037 6.60027 6.61646 6.66534 6.72200 6.77281 6.96004 6.98023 7.49857 7.63932 8.00019 8.13186 8.26012 8.35334 8.84159 9.55080 9.94946 10.99003 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.005324 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.996630 B = 5257.999587 C = 7002.749414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 N -0.645 5.645 4 C 0.592 3.408 5 O -0.509 6.509 6 C -0.236 4.236 7 C -0.079 4.079 8 C -0.217 4.217 9 C 0.152 3.848 10 N -0.558 5.558 11 C 0.354 3.646 12 O -0.287 6.287 13 C 0.039 3.961 14 C 0.159 3.841 15 H 0.080 0.920 16 C -0.192 4.192 17 C -0.130 4.130 18 C 0.115 3.885 19 N -0.610 5.610 20 C -0.300 4.300 21 H 0.093 0.907 22 C 0.047 3.953 23 N -0.898 5.898 24 Si 0.855 3.145 25 H -0.285 1.285 26 H -0.306 1.306 27 H -0.229 1.229 28 C 0.161 3.839 29 C -0.216 4.216 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.262 0.738 36 H 0.181 0.819 37 H 0.159 0.841 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.139 0.861 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.022 0.978 46 H 0.081 0.919 47 H 0.265 0.735 48 H 0.039 0.961 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -7.932 -6.174 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.003 3.997 3 N -0.381 5.381 4 C 0.381 3.619 5 O -0.384 6.384 6 C -0.243 4.243 7 C -0.102 4.102 8 C -0.236 4.236 9 C -0.003 4.003 10 N -0.282 5.282 11 C 0.174 3.826 12 O -0.192 6.192 13 C -0.057 4.057 14 C 0.056 3.944 15 H 0.098 0.902 16 C -0.228 4.228 17 C -0.170 4.170 18 C -0.009 4.009 19 N -0.333 5.333 20 C -0.428 4.428 21 H 0.110 0.890 22 C -0.155 4.155 23 N -0.537 5.537 24 Si 0.685 3.315 25 H -0.212 1.212 26 H -0.234 1.234 27 H -0.153 1.153 28 C 0.033 3.967 29 C -0.256 4.256 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.276 0.724 36 H 0.198 0.802 37 H 0.176 0.824 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.155 0.845 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.099 0.901 47 H 0.075 0.925 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.168 -7.959 -7.544 13.101 hybrid contribution -0.686 0.605 1.214 1.520 sum -7.853 -7.355 -6.330 12.483 Atomic orbital electron populations 1.22186 0.96450 1.01469 1.02617 1.21274 0.94228 0.82016 1.02168 1.47848 1.69849 1.14322 1.06070 1.17833 0.82599 0.78947 0.82492 1.90723 1.49556 1.60647 1.37452 1.20101 1.02491 1.09050 0.92616 1.25149 0.93177 0.89419 1.02430 1.23108 0.97781 1.02181 1.00571 1.22780 0.96819 0.93134 0.87577 1.67380 1.13480 1.13088 1.34261 1.19761 0.88742 0.88379 0.85713 1.86393 1.53238 1.65179 1.14415 1.22823 0.97142 1.01700 0.84012 1.20081 0.98136 0.91784 0.84382 0.90151 1.23061 1.05062 0.95380 0.99278 1.21820 0.98962 1.00196 0.96007 1.22550 0.86761 0.95157 0.96462 1.44025 1.02893 1.01444 1.84981 1.18926 0.91831 1.11078 1.20934 0.89033 1.25586 0.95084 0.99426 0.95438 1.69823 1.16458 1.24318 1.43119 0.88039 0.84013 0.78189 0.81309 1.21151 1.23375 1.15302 1.20737 1.00170 0.84098 0.91671 1.22966 0.97829 1.01892 1.02886 0.91849 0.92315 0.92716 0.90843 0.91057 0.72356 0.80177 0.82392 0.89027 0.92514 0.92596 0.84461 0.91814 0.92517 0.91847 0.95975 0.90085 0.92539 0.94240 0.91544 0.91549 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.24 37.16 0.38 -1.54 16 2 C 0.13 1.56 6.06 -4.04 -0.02 1.54 16 3 N -0.64 -9.69 2.30 -170.85 -0.39 -10.08 16 4 C 0.59 10.65 5.66 -12.47 -0.07 10.58 16 5 O -0.51 -10.32 15.89 -14.91 -0.24 -10.56 16 6 C -0.24 -4.33 5.70 -104.69 -0.60 -4.93 16 7 C -0.08 -1.41 3.72 -38.89 -0.14 -1.55 16 8 C -0.22 -3.91 9.22 -39.50 -0.36 -4.27 16 9 C 0.15 2.53 11.17 -17.49 -0.20 2.34 16 10 N -0.56 -9.75 9.21 -12.99 -0.12 -9.87 16 11 C 0.35 6.54 7.48 -16.61 -0.12 6.41 16 12 O -0.29 -5.09 8.85 -38.14 -0.34 -5.43 16 13 C 0.04 0.51 10.38 101.05 1.05 1.56 16 14 C 0.16 2.29 1.84 -70.98 -0.13 2.16 16 15 H 0.08 1.05 7.23 -51.93 -0.38 0.67 16 16 C -0.19 -3.01 3.70 -28.01 -0.10 -3.11 16 17 C -0.13 -1.96 5.71 -27.30 -0.16 -2.12 16 18 C 0.11 2.08 3.55 -2.94 -0.01 2.07 16 19 N -0.61 -11.75 1.56 -172.08 -0.27 -12.01 16 20 C -0.30 -6.82 7.69 -15.06 -0.12 -6.94 16 21 H 0.09 2.20 5.61 -52.49 -0.29 1.91 16 22 C 0.05 1.18 5.50 -17.43 -0.10 1.09 16 23 N -0.90 -24.28 13.97 55.49 0.78 -23.50 16 24 Si 0.85 18.98 24.99 -169.99 -4.25 14.74 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.31 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.23 -4.49 4.07 56.52 0.23 -4.26 16 28 C 0.16 2.66 5.66 -4.08 -0.02 2.64 16 29 C -0.22 -3.24 4.83 -28.58 -0.14 -3.38 16 30 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.07 0.92 7.96 -51.93 -0.41 0.50 16 35 H 0.26 4.45 0.11 -78.76 -0.01 4.44 16 36 H 0.18 3.60 4.79 -52.49 -0.25 3.34 16 37 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.14 2.43 2.85 -99.82 -0.28 2.15 16 42 H 0.06 1.03 7.49 -51.93 -0.39 0.65 16 43 H 0.06 0.77 7.31 -51.93 -0.38 0.39 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.02 0.42 5.98 -51.93 -0.31 0.11 16 46 H 0.08 1.59 5.05 -51.93 -0.26 1.32 16 47 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 49 H 0.07 1.15 7.99 -51.93 -0.41 0.74 16 50 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.11 1.84 3.82 -68.60 -0.26 1.58 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -28.64 366.86 -7.75 -36.39 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -7.59 Total: 12.25 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -0.86 Total: 2.54 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.01 Total: -55.46 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.57 Total: -15.98 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.25 Total: 14.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.64 -7.75 -36.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998103623.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.138 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds