Wall clock time and date at job start Wed Apr 1 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47527 * 2 1 4 4 C 1.34778 * 119.99964 * 265.11826 * 3 2 1 5 5 O 1.21590 * 120.00034 * 39.05908 * 4 3 2 6 6 C 1.47524 * 119.99697 * 219.06547 * 4 3 2 7 7 C 1.39992 * 120.59684 * 335.92756 * 6 4 3 8 8 C 1.38335 * 118.34878 * 179.78247 * 7 6 4 9 9 C 1.38355 * 119.45644 * 0.49643 * 8 7 6 10 10 N 1.31881 * 121.18791 * 359.74519 * 9 8 7 11 11 C 1.32241 * 121.79855 * 359.97438 * 10 9 8 12 12 O 1.35417 * 119.79645 * 180.02562 * 11 10 9 13 13 C 1.42897 * 117.00577 * 359.97438 * 12 11 10 14 14 C 1.46495 * 119.99697 * 85.10987 * 3 2 1 15 15 H 1.08994 * 108.45297 * 331.76801 * 14 3 2 16 16 C 1.52580 * 108.51405 * 214.21969 * 14 3 2 17 17 C 1.50881 * 109.35848 * 153.73486 * 16 14 3 18 18 C 1.53944 * 110.09068 * 91.88985 * 17 16 14 19 19 N 1.47610 * 112.14751 * 319.43232 * 18 17 16 20 20 C 1.36933 * 118.64451 * 137.88770 * 19 18 17 21 21 H 1.08000 * 119.99660 * 225.44114 * 20 19 18 22 22 C 1.38814 * 119.99820 * 45.44926 * 20 19 18 23 23 N 1.31621 * 119.99738 * 168.42214 * 22 20 19 24 24 Si 1.86795 * 120.00158 * 348.41617 * 22 20 19 25 25 H 1.48498 * 109.47324 * 81.72216 * 24 22 20 26 26 H 1.48491 * 109.47345 * 201.72751 * 24 22 20 27 27 H 1.48512 * 109.46890 * 321.72455 * 24 22 20 28 28 C 1.44584 * 122.70853 * 317.87167 * 19 18 17 29 29 C 1.47098 * 108.51338 * 89.45775 * 14 3 2 30 30 H 1.09000 * 109.47073 * 60.00038 * 1 2 3 31 31 H 1.09002 * 109.47338 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46907 * 299.99986 * 1 2 3 33 33 H 1.09003 * 109.46584 * 120.00120 * 2 1 3 34 34 H 1.09001 * 109.47182 * 239.99570 * 2 1 3 35 35 H 1.07997 * 120.82574 * 0.02722 * 7 6 4 36 36 H 1.07999 * 120.27130 * 180.23760 * 8 7 6 37 37 H 1.07998 * 119.40508 * 179.72191 * 9 8 7 38 38 H 1.08996 * 109.47677 * 180.02562 * 13 12 11 39 39 H 1.08999 * 109.47100 * 300.00037 * 13 12 11 40 40 H 1.09000 * 109.47188 * 59.99582 * 13 12 11 41 41 H 1.08997 * 109.48984 * 273.70723 * 16 14 3 42 42 H 1.09003 * 109.48333 * 33.77319 * 16 14 3 43 43 H 1.08999 * 109.36851 * 331.69834 * 17 16 14 44 44 H 1.08998 * 109.25905 * 212.01169 * 17 16 14 45 45 H 1.09005 * 108.94633 * 198.75003 * 18 17 16 46 46 H 1.09001 * 108.95044 * 80.11993 * 18 17 16 47 47 H 0.97002 * 119.99766 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.44791 * 330.68619 * 28 19 18 49 49 H 1.08998 * 109.42587 * 210.74347 * 28 19 18 50 50 H 1.09001 * 109.32458 * 304.31897 * 29 14 3 51 51 H 1.08997 * 109.32544 * 63.79167 * 29 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3368 1.9833 -1.1630 5 8 1.6538 1.7962 -2.1514 6 6 3.5139 2.8694 -1.2367 7 6 4.0078 3.4954 -0.0860 8 6 5.1169 4.3131 -0.2077 9 6 5.6944 4.4956 -1.4517 10 7 5.2096 3.9000 -2.5238 11 6 4.1552 3.1042 -2.4620 12 8 3.6916 2.5128 -3.5885 13 6 4.3893 2.7943 -4.8034 14 6 2.1607 2.1077 1.2641 15 1 1.4351 1.7105 1.9739 16 6 1.8369 3.5781 1.0169 17 6 1.3463 4.2046 2.2988 18 6 2.5262 4.8228 3.0706 19 7 3.7293 3.9687 3.0254 20 6 4.9480 4.5613 2.8283 21 1 5.6457 4.1388 2.1204 22 6 5.2866 5.7049 3.5386 23 7 6.5272 6.1443 3.5257 24 14 3.9816 6.6201 4.5126 25 1 3.7837 5.9526 5.8242 26 1 4.4196 8.0219 4.7316 27 1 2.7036 6.6134 3.7559 28 6 3.6741 2.5323 3.1808 29 6 3.5119 1.8654 1.7926 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.5371 3.3405 0.8735 36 1 5.5262 4.8083 0.6605 37 1 6.5576 5.1378 -1.5465 38 1 3.9159 2.2594 -5.6267 39 1 4.3574 3.8658 -5.0008 40 1 5.4266 2.4730 -4.7096 41 1 2.7343 4.0962 0.6789 42 1 1.0622 3.6565 0.2541 43 1 0.8711 3.4416 2.9153 44 1 0.6206 4.9832 2.0637 45 1 2.2327 4.9658 4.1106 46 1 2.7646 5.7932 2.6351 47 1 6.7637 6.9437 4.0218 48 1 2.8255 2.2679 3.8119 49 1 4.5955 2.1823 3.6461 50 1 3.6752 0.7918 1.8867 51 1 4.2481 2.2808 1.1046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998103623.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:56 Heat of formation + Delta-G solvation = 103.588318 kcal Electronic energy + Delta-G solvation = -34209.409385 eV Core-core repulsion = 30115.054532 eV Total energy + Delta-G solvation = -4094.354853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.11870 -40.91256 -39.75896 -38.66945 -37.05162 -35.12885 -34.02853 -33.37843 -32.60914 -31.91733 -30.81349 -28.26926 -27.92158 -26.59048 -25.56208 -24.91590 -24.62286 -23.58938 -22.12361 -21.47086 -20.07768 -19.32628 -18.90487 -18.22024 -17.77498 -17.57377 -17.15520 -16.91500 -16.63651 -16.35791 -15.76108 -15.51224 -15.32107 -15.16681 -14.99908 -14.87215 -14.75799 -14.32841 -14.15464 -13.82164 -13.68011 -13.57390 -13.45745 -13.34162 -13.04328 -12.93709 -12.77321 -12.66410 -12.44399 -12.20940 -12.07626 -11.98716 -11.86395 -11.59070 -11.51443 -11.19766 -10.83254 -10.71144 -10.36954 -10.15296 -10.04067 -9.63259 -9.38671 -8.49588 -7.99409 -5.58424 -0.32048 0.31925 1.46768 1.50416 1.59120 1.60532 1.97411 2.11799 2.58340 2.77457 3.23127 3.28092 3.39264 3.51508 3.67175 3.91810 4.00384 4.10554 4.16489 4.21867 4.29455 4.31794 4.36766 4.37806 4.40793 4.44197 4.55660 4.57188 4.61600 4.68188 4.74296 4.77507 4.87339 4.89296 4.99529 5.04582 5.12577 5.13905 5.18798 5.20989 5.29404 5.31531 5.38724 5.41348 5.47627 5.58419 5.81954 6.12945 6.19626 6.37564 6.42707 6.75938 7.04253 7.17531 7.77984 8.17990 9.11261 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.005324 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.996630 B = 5257.999587 C = 7002.749414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.118 3.882 3 N -0.637 5.637 4 C 0.591 3.409 5 O -0.540 6.540 6 C -0.254 4.254 7 C -0.070 4.070 8 C -0.233 4.233 9 C 0.155 3.845 10 N -0.560 5.560 11 C 0.343 3.657 12 O -0.304 6.304 13 C 0.033 3.967 14 C 0.160 3.840 15 H 0.112 0.888 16 C -0.189 4.189 17 C -0.120 4.120 18 C 0.109 3.891 19 N -0.618 5.618 20 C -0.263 4.263 21 H 0.074 0.926 22 C -0.009 4.009 23 N -0.948 5.948 24 Si 0.888 3.112 25 H -0.295 1.295 26 H -0.330 1.330 27 H -0.179 1.179 28 C 0.158 3.842 29 C -0.206 4.206 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.270 0.730 36 H 0.159 0.841 37 H 0.183 0.817 38 H 0.120 0.880 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.116 0.884 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.256 0.744 48 H 0.071 0.929 49 H 0.054 0.946 50 H 0.090 0.910 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 -9.882 -5.835 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.003 4.003 3 N -0.373 5.373 4 C 0.381 3.619 5 O -0.417 6.417 6 C -0.260 4.260 7 C -0.093 4.093 8 C -0.252 4.252 9 C 0.000 4.000 10 N -0.285 5.285 11 C 0.163 3.837 12 O -0.210 6.210 13 C -0.061 4.061 14 C 0.058 3.942 15 H 0.130 0.870 16 C -0.226 4.226 17 C -0.159 4.159 18 C -0.014 4.014 19 N -0.342 5.342 20 C -0.392 4.392 21 H 0.092 0.908 22 C -0.207 4.207 23 N -0.592 5.592 24 Si 0.718 3.282 25 H -0.222 1.222 26 H -0.260 1.260 27 H -0.102 1.102 28 C 0.031 3.969 29 C -0.246 4.246 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.284 0.716 36 H 0.176 0.824 37 H 0.200 0.800 38 H 0.138 0.862 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.108 0.892 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.825 -9.961 -7.207 15.738 hybrid contribution 0.160 1.101 1.018 1.508 sum -9.665 -8.860 -6.189 14.499 Atomic orbital electron populations 1.22111 0.95429 1.02762 1.01661 1.21555 0.95077 0.80462 1.03253 1.47893 1.68978 1.15144 1.05247 1.17854 0.82273 0.78779 0.83012 1.90703 1.50451 1.61897 1.38652 1.20281 1.03156 1.09803 0.92782 1.25282 0.92637 0.88616 1.02723 1.22894 0.98729 1.03240 1.00367 1.23117 0.97076 0.92768 0.86993 1.67454 1.13504 1.13280 1.34214 1.20038 0.88929 0.88423 0.86276 1.86375 1.54081 1.65215 1.15324 1.23102 0.97555 1.02349 0.83122 1.20147 0.98423 0.91124 0.84532 0.87044 1.22958 1.03815 0.96208 0.99603 1.21735 0.97654 1.01287 0.95260 1.22493 0.87304 0.94521 0.97110 1.44117 1.02177 1.02741 1.85177 1.18908 0.92536 1.09573 1.18212 0.90850 1.26161 0.96218 1.00999 0.97273 1.69953 1.18443 1.25065 1.45692 0.87593 0.84724 0.75684 0.80199 1.22241 1.26048 1.10180 1.20855 1.00970 0.82125 0.92901 1.22797 0.97569 1.03009 1.01183 0.94577 0.89959 0.91777 0.87757 0.91978 0.71636 0.82365 0.80043 0.86172 0.92392 0.92141 0.86759 0.92267 0.89755 0.90206 0.95452 0.91954 0.93522 0.91120 0.92757 0.89166 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 10.24 71.98 0.74 -2.38 16 2 C 0.12 2.53 6.06 86.38 0.52 3.05 16 3 N -0.64 -17.45 2.30 -812.72 -1.87 -19.32 16 4 C 0.59 20.67 5.66 86.69 0.49 21.16 16 5 O -0.54 -21.66 15.89 15.31 0.24 -21.42 16 6 C -0.25 -9.24 5.70 -19.91 -0.11 -9.35 16 7 C -0.07 -2.49 3.72 22.72 0.08 -2.40 16 8 C -0.23 -8.57 9.22 22.32 0.21 -8.36 16 9 C 0.16 5.24 11.17 84.71 0.95 6.18 16 10 N -0.56 -19.55 9.21 -308.01 -2.84 -22.39 16 11 C 0.34 12.68 7.48 85.13 0.64 13.31 16 12 O -0.30 -10.72 8.85 -67.81 -0.60 -11.32 16 13 C 0.03 0.85 10.38 113.37 1.18 2.02 16 14 C 0.16 4.01 1.84 43.02 0.08 4.09 16 15 H 0.11 2.22 7.23 -2.39 -0.02 2.20 16 16 C -0.19 -5.41 3.70 29.77 0.11 -5.30 16 17 C -0.12 -3.09 5.71 30.22 0.17 -2.92 16 18 C 0.11 3.63 3.55 86.49 0.31 3.94 16 19 N -0.62 -22.65 1.56 -698.35 -1.09 -23.74 16 20 C -0.26 -12.04 7.69 84.03 0.65 -11.40 16 21 H 0.07 3.64 5.61 -2.91 -0.02 3.63 16 22 C -0.01 -0.47 5.50 84.86 0.47 -0.01 16 23 N -0.95 -53.55 13.97 21.65 0.30 -53.24 16 24 Si 0.89 38.86 24.99 68.60 1.71 40.57 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 26 H -0.33 -15.76 7.11 99.48 0.71 -15.06 16 27 H -0.18 -6.52 4.07 99.48 0.40 -6.11 16 28 C 0.16 4.74 5.66 87.37 0.49 5.23 16 29 C -0.21 -5.55 4.83 29.39 0.14 -5.41 16 30 H 0.03 0.90 8.07 -2.39 -0.02 0.88 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.63 8.11 -2.39 -0.02 1.61 16 34 H 0.06 1.46 7.96 -2.39 -0.02 1.44 16 35 H 0.27 8.83 0.11 -27.59 0.00 8.83 16 36 H 0.16 6.62 4.79 -2.91 -0.01 6.60 16 37 H 0.18 5.07 8.06 -2.91 -0.02 5.04 16 38 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 40 H 0.06 1.46 8.10 -2.39 -0.02 1.45 16 41 H 0.12 3.90 2.85 -47.37 -0.14 3.76 16 42 H 0.06 1.78 7.49 -2.39 -0.02 1.76 16 43 H 0.08 1.76 7.31 -2.39 -0.02 1.74 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.03 0.91 5.98 -2.38 -0.01 0.90 16 46 H 0.06 2.30 5.05 -2.39 -0.01 2.29 16 47 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 48 H 0.07 1.74 8.06 -2.39 -0.02 1.72 16 49 H 0.05 1.77 7.99 -2.39 -0.02 1.75 16 50 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 51 H 0.08 2.73 3.82 -18.05 -0.07 2.66 16 Total: -1.00 -65.08 366.86 3.45 -61.63 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: 0.48 Total: 37.77 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 7.11 Total: 11.46 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -5.49 Total: -118.69 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.36 Total: -32.74 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.71 Total: 40.57 kcal Total: -65.08 3.45 -61.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998103623.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.216 kcal (2) G-P(sol) polarization free energy of solvation -65.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds