Wall clock time and date at job start Wed Apr 1 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47328 * 2 1 4 4 C 1.34777 * 119.99940 * 83.07890 * 3 2 1 5 5 O 1.21688 * 120.00271 * 184.15125 * 4 3 2 6 6 C 1.46726 * 119.99685 * 4.14623 * 4 3 2 7 7 O 1.35340 * 126.64971 * 353.01235 * 6 4 3 8 8 C 1.33665 * 107.68900 * 180.25972 * 7 6 4 9 9 N 1.30621 * 109.14997 * 359.75332 * 8 7 6 10 10 C 1.33695 * 108.99625 * 0.02562 * 9 8 7 11 11 C 1.50701 * 126.26825 * 179.97438 * 10 9 8 12 12 C 1.53000 * 117.49932 * 60.02938 * 11 10 9 13 13 C 1.53002 * 60.03098 * 252.49307 * 12 11 10 14 14 C 1.46503 * 120.00260 * 263.08170 * 3 2 1 15 15 H 1.09001 * 110.20825 * 359.97438 * 14 3 2 16 16 C 1.50127 * 110.24760 * 121.93318 * 14 3 2 17 17 C 1.54641 * 110.92618 * 216.54405 * 16 14 3 18 18 C 1.54905 * 110.18835 * 321.34077 * 17 16 14 19 19 N 1.43433 * 116.07635 * 318.52529 * 18 17 16 20 20 C 1.36938 * 120.53841 * 271.59088 * 19 18 17 21 21 H 1.07998 * 119.99878 * 326.46940 * 20 19 18 22 22 C 1.38812 * 119.99750 * 146.46969 * 20 19 18 23 23 N 1.31620 * 120.00284 * 3.15710 * 22 20 19 24 24 Si 1.86803 * 119.99665 * 183.15532 * 22 20 19 25 25 H 1.48507 * 109.47162 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47137 * 120.00169 * 24 22 20 27 27 H 1.48504 * 109.46837 * 240.00028 * 24 22 20 28 28 C 1.50175 * 118.92250 * 91.57293 * 19 18 17 29 29 C 1.46237 * 107.53144 * 289.58619 * 28 19 18 30 30 H 1.08997 * 109.46933 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46963 * 299.99898 * 1 2 3 32 32 H 1.09002 * 109.46776 * 59.99511 * 1 2 3 33 33 H 1.08998 * 109.46362 * 240.00336 * 2 1 3 34 34 H 1.09002 * 109.46776 * 120.00488 * 2 1 3 35 35 H 1.07994 * 125.42477 * 179.71855 * 8 7 6 36 36 H 1.08999 * 115.54536 * 205.68844 * 11 10 9 37 37 H 1.08997 * 117.49974 * 359.97438 * 12 11 10 38 38 H 1.08996 * 117.50155 * 144.99228 * 12 11 10 39 39 H 1.08999 * 117.50076 * 107.49550 * 13 12 11 40 40 H 1.09000 * 117.49775 * 252.52365 * 13 12 11 41 41 H 1.08999 * 109.21206 * 336.99518 * 16 14 3 42 42 H 1.08997 * 109.20622 * 96.31552 * 16 14 3 43 43 H 1.08990 * 109.42528 * 201.05896 * 17 16 14 44 44 H 1.09000 * 109.12998 * 81.42776 * 17 16 14 45 45 H 1.08992 * 108.15662 * 196.81036 * 18 17 16 46 46 H 1.09000 * 108.00171 * 80.11799 * 18 17 16 47 47 H 0.97001 * 119.99442 * 179.97438 * 23 22 20 48 48 H 1.09007 * 109.84218 * 170.08339 * 28 19 18 49 49 H 1.08989 * 109.90400 * 49.12587 * 28 19 18 50 50 H 1.09008 * 108.52199 * 297.16685 * 29 28 19 51 51 H 1.08998 * 108.39916 * 179.56958 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1105 2.0634 1.1587 5 8 2.4438 3.2337 1.1510 6 6 1.8087 1.3949 2.4295 7 8 1.3029 0.1495 2.5870 8 6 1.1734 -0.0733 3.8986 9 7 1.5826 0.9795 4.5546 10 6 1.9857 1.9074 3.6805 11 6 2.5304 3.2717 4.0165 12 6 3.8008 3.3354 4.8668 13 6 2.4526 3.7244 5.4766 14 6 2.4067 2.0209 -1.2595 15 1 2.2697 1.3294 -2.0909 16 6 1.5985 3.2666 -1.4803 17 6 1.2643 3.4497 -2.9791 18 6 2.4744 3.0324 -3.8514 19 7 3.7645 3.4440 -3.3784 20 6 4.2807 4.6611 -3.7355 21 1 4.0642 5.0748 -4.7093 22 6 5.0822 5.3630 -2.8457 23 7 5.3971 4.8316 -1.6834 24 14 5.7140 7.0618 -3.2979 25 1 5.2218 7.4292 -4.6500 26 1 5.2241 8.0523 -2.3061 27 1 7.1991 7.0538 -3.2975 28 6 4.5396 2.5188 -2.4850 29 6 3.8588 2.4826 -1.1913 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.7907 -0.9793 4.3448 36 1 2.4019 4.0319 3.2460 37 1 4.2423 2.3906 5.1835 38 1 4.5079 4.1376 4.6558 39 1 2.0072 3.0354 6.1943 40 1 2.2726 4.7826 5.6664 41 1 0.6712 3.1980 -0.9114 42 1 2.1677 4.1294 -1.1345 43 1 1.0235 4.4951 -3.1716 44 1 0.4052 2.8284 -3.2320 45 1 2.3314 3.4447 -4.8502 46 1 2.4730 1.9454 -3.9316 47 1 5.9576 5.3221 -1.0619 48 1 5.5558 2.8922 -2.3580 49 1 4.5643 1.5190 -2.9181 50 1 3.8841 3.4828 -0.7585 51 1 4.4062 1.8080 -0.5331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998114942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:19 Heat of formation + Delta-G solvation = 57.707883 kcal Electronic energy + Delta-G solvation = -33068.479775 eV Core-core repulsion = 28972.135397 eV Total energy + Delta-G solvation = -4096.344378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.53454 -39.95234 -37.59834 -37.19549 -35.64506 -34.39680 -33.08225 -31.65827 -30.58816 -30.46495 -29.44850 -26.13969 -24.99318 -23.78221 -23.63774 -23.03864 -22.82834 -22.25196 -21.04283 -20.21120 -19.53373 -18.82637 -17.22096 -17.00732 -16.69056 -16.50705 -15.74093 -15.49657 -14.96595 -14.69083 -14.59206 -14.08555 -13.99842 -13.76502 -13.69830 -13.46206 -13.15187 -12.91507 -12.71032 -12.08782 -11.97635 -11.90826 -11.83790 -11.67983 -11.47352 -11.29256 -11.15451 -11.07939 -10.83636 -10.81819 -10.60472 -10.50659 -10.40208 -10.22433 -10.10702 -9.90217 -9.82962 -9.54919 -9.24253 -9.19609 -8.83706 -8.42507 -8.14676 -6.49171 -5.71002 -3.24492 0.84306 2.33231 2.43189 3.23026 3.29431 3.41444 3.49706 3.50685 3.85408 4.00809 4.46532 4.54808 4.60187 4.93208 5.00842 5.08905 5.21807 5.33307 5.35900 5.37440 5.41590 5.51395 5.53723 5.62693 5.68986 5.74127 5.80410 5.85755 5.86307 5.93857 6.11100 6.17724 6.18794 6.21646 6.25099 6.30955 6.37018 6.51801 6.59403 6.73653 6.93012 6.96793 7.07559 7.10757 7.27248 7.35778 7.45465 7.63255 7.80827 7.85557 8.16933 8.39549 8.58339 9.29158 9.91130 10.48358 11.34148 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.003965 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.772113 B = 7060.660509 C = 8773.507537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.595 5.595 4 C 0.599 3.401 5 O -0.487 6.487 6 C -0.092 4.092 7 O -0.184 6.184 8 C 0.181 3.819 9 N -0.490 5.490 10 C 0.101 3.899 11 C -0.090 4.090 12 C -0.158 4.158 13 C -0.164 4.164 14 C 0.154 3.846 15 H 0.082 0.918 16 C -0.106 4.106 17 C -0.143 4.143 18 C 0.159 3.841 19 N -0.589 5.589 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.013 3.987 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.168 3.832 29 C -0.134 4.134 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.251 0.749 36 H 0.142 0.858 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.034 0.966 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.040 0.960 45 H 0.031 0.969 46 H 0.023 0.977 47 H 0.253 0.747 48 H 0.100 0.900 49 H -0.003 1.003 50 H 0.120 0.880 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 -12.451 10.242 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.328 5.328 4 C 0.384 3.616 5 O -0.362 6.362 6 C -0.147 4.147 7 O -0.070 6.070 8 C -0.045 4.045 9 N -0.218 5.218 10 C -0.022 4.022 11 C -0.109 4.109 12 C -0.195 4.195 13 C -0.201 4.201 14 C 0.053 3.947 15 H 0.100 0.900 16 C -0.144 4.144 17 C -0.184 4.184 18 C 0.029 3.971 19 N -0.311 5.311 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.186 4.186 23 N -0.539 5.539 24 Si 0.728 3.272 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.044 3.956 29 C -0.173 4.173 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.267 0.733 36 H 0.160 0.840 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.053 0.947 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.042 0.958 47 H 0.064 0.936 48 H 0.118 0.882 49 H 0.015 0.985 50 H 0.138 0.862 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.961 -11.750 10.913 18.370 hybrid contribution 0.008 0.476 -0.609 0.773 sum -8.953 -11.274 10.304 17.704 Atomic orbital electron populations 1.22171 0.95845 1.01847 1.02329 1.21714 0.94553 0.82819 1.03121 1.48238 1.63804 1.13720 1.07011 1.16420 0.78731 0.85759 0.80702 1.90931 1.46421 1.14031 1.84790 1.23234 1.09270 0.84459 0.97761 1.84740 1.62719 1.30626 1.28906 1.28234 0.98773 0.99932 0.77527 1.70206 1.15752 1.01026 1.34857 1.20976 0.98318 0.95746 0.87207 1.20598 1.02338 0.91843 0.96080 1.22939 0.90743 1.03368 1.02470 1.22973 1.00531 1.01879 0.94712 1.20712 0.97723 0.94315 0.81915 0.90006 1.21669 0.98182 0.98621 0.95977 1.22852 0.98906 1.00624 0.96037 1.20420 0.85807 0.95720 0.95118 1.44086 1.12006 1.17144 1.57825 1.19162 1.27635 0.94410 0.97180 0.91852 1.25247 1.00730 0.97471 0.95131 1.69866 1.39204 1.36570 1.08283 0.86289 0.78014 0.85184 0.77684 1.20437 1.21602 1.21832 1.20191 0.98530 0.88965 0.87902 1.21419 0.90964 1.04574 1.00321 0.91752 0.92825 0.92198 0.89989 0.90087 0.73291 0.84029 0.88916 0.87903 0.88056 0.88404 0.94719 0.89618 0.92782 0.94140 0.95036 0.95846 0.93637 0.88179 0.98493 0.86244 0.95842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.73 37.16 0.36 -1.38 16 2 C 0.10 1.23 5.72 -4.04 -0.02 1.21 16 3 N -0.60 -9.72 2.32 -169.54 -0.39 -10.11 16 4 C 0.60 10.69 6.92 -12.83 -0.09 10.60 16 5 O -0.49 -10.33 12.15 5.20 0.06 -10.27 16 6 C -0.09 -1.40 6.56 -36.84 -0.24 -1.64 16 7 O -0.18 -2.15 6.32 4.43 0.03 -2.12 16 8 C 0.18 1.72 13.21 52.25 0.69 2.41 16 9 N -0.49 -6.30 10.89 -10.88 -0.12 -6.42 16 10 C 0.10 1.51 6.67 -82.46 -0.55 0.96 16 11 C -0.09 -1.33 5.67 -91.73 -0.52 -1.86 16 12 C -0.16 -2.04 10.23 -26.73 -0.27 -2.31 16 13 C -0.16 -1.98 10.16 -26.69 -0.27 -2.25 16 14 C 0.15 2.89 2.37 -69.60 -0.17 2.72 16 15 H 0.08 1.45 5.90 -51.93 -0.31 1.14 16 16 C -0.11 -2.15 4.09 -27.30 -0.11 -2.26 16 17 C -0.14 -2.74 6.40 -24.86 -0.16 -2.89 16 18 C 0.16 3.30 5.18 -4.66 -0.02 3.27 16 19 N -0.59 -14.42 2.60 -175.08 -0.45 -14.87 16 20 C -0.25 -6.86 9.59 -15.06 -0.14 -7.00 16 21 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 22 C 0.01 0.36 5.32 -17.43 -0.09 0.26 16 23 N -0.90 -25.04 8.85 55.49 0.49 -24.55 16 24 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 C 0.17 3.95 5.23 -5.20 -0.03 3.92 16 29 C -0.13 -2.97 3.73 -30.19 -0.11 -3.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.62 7.03 -51.93 -0.37 0.26 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.91 7.80 -51.93 -0.41 0.50 16 34 H 0.08 0.93 5.45 -51.93 -0.28 0.65 16 35 H 0.25 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.14 2.37 6.55 -51.93 -0.34 2.03 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.10 1.20 7.92 -51.93 -0.41 0.79 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.67 7.82 -51.93 -0.41 0.26 16 42 H 0.09 2.13 6.36 -51.93 -0.33 1.80 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.65 8.00 -51.93 -0.42 0.24 16 46 H 0.02 0.44 6.88 -51.93 -0.36 0.09 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.10 2.66 6.09 -51.93 -0.32 2.35 16 49 H 0.00 -0.06 8.12 -51.94 -0.42 -0.49 16 50 H 0.12 3.15 4.41 -51.92 -0.23 2.92 16 51 H 0.02 0.51 8.02 -51.93 -0.42 0.09 16 LS Contribution 388.34 15.07 5.85 5.85 Total: -1.00 -30.93 388.34 -9.24 -40.17 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.93 Total: 4.93 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.75 Total: 0.68 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.48 Total: -55.96 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.93 -9.24 -40.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998114942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.880 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds