Wall clock time and date at job start Wed Apr 1 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47328 * 2 1 4 4 C 1.34777 * 119.99940 * 83.07890 * 3 2 1 5 5 O 1.21688 * 120.00271 * 184.15125 * 4 3 2 6 6 C 1.46726 * 119.99685 * 4.14623 * 4 3 2 7 7 O 1.35340 * 126.64971 * 353.01235 * 6 4 3 8 8 C 1.33665 * 107.68900 * 180.25972 * 7 6 4 9 9 N 1.30621 * 109.14997 * 359.75332 * 8 7 6 10 10 C 1.33695 * 108.99625 * 0.02562 * 9 8 7 11 11 C 1.50701 * 126.26825 * 179.97438 * 10 9 8 12 12 C 1.53000 * 117.49932 * 60.02938 * 11 10 9 13 13 C 1.53002 * 60.03098 * 252.49307 * 12 11 10 14 14 C 1.46503 * 120.00260 * 263.08170 * 3 2 1 15 15 H 1.09001 * 110.20825 * 359.97438 * 14 3 2 16 16 C 1.50127 * 110.24760 * 121.93318 * 14 3 2 17 17 C 1.54641 * 110.92618 * 216.54405 * 16 14 3 18 18 C 1.54905 * 110.18835 * 321.34077 * 17 16 14 19 19 N 1.43433 * 116.07635 * 318.52529 * 18 17 16 20 20 C 1.36938 * 120.53841 * 271.59088 * 19 18 17 21 21 H 1.07998 * 119.99878 * 326.46940 * 20 19 18 22 22 C 1.38812 * 119.99750 * 146.46969 * 20 19 18 23 23 N 1.31620 * 120.00284 * 3.15710 * 22 20 19 24 24 Si 1.86803 * 119.99665 * 183.15532 * 22 20 19 25 25 H 1.48507 * 109.47162 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47137 * 120.00169 * 24 22 20 27 27 H 1.48504 * 109.46837 * 240.00028 * 24 22 20 28 28 C 1.50175 * 118.92250 * 91.57293 * 19 18 17 29 29 C 1.46237 * 107.53144 * 289.58619 * 28 19 18 30 30 H 1.08997 * 109.46933 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46963 * 299.99898 * 1 2 3 32 32 H 1.09002 * 109.46776 * 59.99511 * 1 2 3 33 33 H 1.08998 * 109.46362 * 240.00336 * 2 1 3 34 34 H 1.09002 * 109.46776 * 120.00488 * 2 1 3 35 35 H 1.07994 * 125.42477 * 179.71855 * 8 7 6 36 36 H 1.08999 * 115.54536 * 205.68844 * 11 10 9 37 37 H 1.08997 * 117.49974 * 359.97438 * 12 11 10 38 38 H 1.08996 * 117.50155 * 144.99228 * 12 11 10 39 39 H 1.08999 * 117.50076 * 107.49550 * 13 12 11 40 40 H 1.09000 * 117.49775 * 252.52365 * 13 12 11 41 41 H 1.08999 * 109.21206 * 336.99518 * 16 14 3 42 42 H 1.08997 * 109.20622 * 96.31552 * 16 14 3 43 43 H 1.08990 * 109.42528 * 201.05896 * 17 16 14 44 44 H 1.09000 * 109.12998 * 81.42776 * 17 16 14 45 45 H 1.08992 * 108.15662 * 196.81036 * 18 17 16 46 46 H 1.09000 * 108.00171 * 80.11799 * 18 17 16 47 47 H 0.97001 * 119.99442 * 179.97438 * 23 22 20 48 48 H 1.09007 * 109.84218 * 170.08339 * 28 19 18 49 49 H 1.08989 * 109.90400 * 49.12587 * 28 19 18 50 50 H 1.09008 * 108.52199 * 297.16685 * 29 28 19 51 51 H 1.08998 * 108.39916 * 179.56958 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1105 2.0634 1.1587 5 8 2.4438 3.2337 1.1510 6 6 1.8087 1.3949 2.4295 7 8 1.3029 0.1495 2.5870 8 6 1.1734 -0.0733 3.8986 9 7 1.5826 0.9795 4.5546 10 6 1.9857 1.9074 3.6805 11 6 2.5304 3.2717 4.0165 12 6 3.8008 3.3354 4.8668 13 6 2.4526 3.7244 5.4766 14 6 2.4067 2.0209 -1.2595 15 1 2.2697 1.3294 -2.0909 16 6 1.5985 3.2666 -1.4803 17 6 1.2643 3.4497 -2.9791 18 6 2.4744 3.0324 -3.8514 19 7 3.7645 3.4440 -3.3784 20 6 4.2807 4.6611 -3.7355 21 1 4.0642 5.0748 -4.7093 22 6 5.0822 5.3630 -2.8457 23 7 5.3971 4.8316 -1.6834 24 14 5.7140 7.0618 -3.2979 25 1 5.2218 7.4292 -4.6500 26 1 5.2241 8.0523 -2.3061 27 1 7.1991 7.0538 -3.2975 28 6 4.5396 2.5188 -2.4850 29 6 3.8588 2.4826 -1.1913 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.7907 -0.9793 4.3448 36 1 2.4019 4.0319 3.2460 37 1 4.2423 2.3906 5.1835 38 1 4.5079 4.1376 4.6558 39 1 2.0072 3.0354 6.1943 40 1 2.2726 4.7826 5.6664 41 1 0.6712 3.1980 -0.9114 42 1 2.1677 4.1294 -1.1345 43 1 1.0235 4.4951 -3.1716 44 1 0.4052 2.8284 -3.2320 45 1 2.3314 3.4447 -4.8502 46 1 2.4730 1.9454 -3.9316 47 1 5.9576 5.3221 -1.0619 48 1 5.5558 2.8922 -2.3580 49 1 4.5643 1.5190 -2.9181 50 1 3.8841 3.4828 -0.7585 51 1 4.4062 1.8080 -0.5331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998114942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:18 Heat of formation + Delta-G solvation = 38.737166 kcal Electronic energy + Delta-G solvation = -33069.302407 eV Core-core repulsion = 28972.135397 eV Total energy + Delta-G solvation = -4097.167010 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.49678 -41.35850 -39.04743 -38.45797 -36.97138 -35.45152 -34.77236 -33.29127 -32.47355 -31.53111 -30.70784 -27.91175 -26.39710 -25.04766 -24.88143 -24.69211 -23.89195 -23.27381 -22.35010 -21.56243 -21.02563 -20.29660 -18.65136 -18.27489 -17.97861 -17.55814 -17.22888 -16.88445 -16.55614 -15.93685 -15.68434 -15.58997 -15.43707 -15.36720 -15.05219 -14.98119 -14.56835 -14.25623 -14.00040 -13.54310 -13.28410 -13.14878 -13.10112 -13.04500 -12.93342 -12.90592 -12.73459 -12.47172 -12.41376 -12.13672 -12.01333 -11.87394 -11.77961 -11.77428 -11.56296 -11.51173 -11.38872 -11.17908 -10.99121 -10.77000 -10.40270 -9.96555 -9.53633 -8.45870 -7.79146 -5.33595 -0.20266 1.39752 1.39991 1.44277 1.47615 1.55772 1.99367 2.10127 2.53026 2.90681 3.05843 3.35839 3.44215 3.53599 3.66735 3.90653 3.99578 4.04870 4.08001 4.18954 4.27514 4.30613 4.35408 4.41726 4.49639 4.54764 4.58244 4.65259 4.68293 4.71993 4.81656 4.87841 4.88921 4.96143 4.97972 5.11700 5.18484 5.19972 5.23252 5.25648 5.28030 5.36730 5.40403 5.45336 5.59083 5.68162 5.71960 5.85005 6.22935 6.38721 6.52394 6.57498 7.07210 7.24465 7.93689 8.46508 9.22993 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.003965 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.772113 B = 7060.660509 C = 8773.507537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.095 3.905 3 N -0.595 5.595 4 C 0.592 3.408 5 O -0.537 6.537 6 C -0.120 4.120 7 O -0.176 6.176 8 C 0.219 3.781 9 N -0.516 5.516 10 C 0.100 3.900 11 C -0.120 4.120 12 C -0.156 4.156 13 C -0.139 4.139 14 C 0.169 3.831 15 H 0.106 0.894 16 C -0.091 4.091 17 C -0.134 4.134 18 C 0.152 3.848 19 N -0.603 5.603 20 C -0.263 4.263 21 H 0.062 0.938 22 C -0.035 4.035 23 N -0.913 5.913 24 Si 0.954 3.046 25 H -0.268 1.268 26 H -0.299 1.299 27 H -0.291 1.291 28 C 0.172 3.828 29 C -0.117 4.117 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.312 0.688 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.081 0.919 45 H 0.033 0.967 46 H 0.051 0.949 47 H 0.243 0.757 48 H 0.063 0.937 49 H 0.023 0.977 50 H 0.075 0.925 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.326 -15.647 10.633 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.379 3.621 5 O -0.416 6.416 6 C -0.175 4.175 7 O -0.063 6.063 8 C -0.005 4.005 9 N -0.244 5.244 10 C -0.023 4.023 11 C -0.139 4.139 12 C -0.193 4.193 13 C -0.176 4.176 14 C 0.067 3.933 15 H 0.123 0.877 16 C -0.130 4.130 17 C -0.175 4.175 18 C 0.024 3.976 19 N -0.326 5.326 20 C -0.393 4.393 21 H 0.080 0.920 22 C -0.232 4.232 23 N -0.558 5.558 24 Si 0.784 3.216 25 H -0.192 1.192 26 H -0.227 1.227 27 H -0.218 1.218 28 C 0.049 3.951 29 C -0.157 4.157 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.326 0.674 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.081 0.919 49 H 0.041 0.959 50 H 0.094 0.906 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -11.043 -14.985 11.287 21.769 hybrid contribution 0.602 1.362 -0.657 1.627 sum -10.441 -13.623 10.630 20.189 Atomic orbital electron populations 1.22105 0.94282 1.03608 1.01329 1.22042 0.95760 0.80323 1.04526 1.48274 1.63449 1.15239 1.05689 1.16782 0.77950 0.85428 0.81917 1.90918 1.48620 1.16279 1.85790 1.22560 1.12332 0.86133 0.96491 1.84722 1.62653 1.28875 1.30068 1.29642 0.94398 1.00158 0.76346 1.70240 1.17581 1.01759 1.34865 1.21036 0.97596 0.95889 0.87731 1.20513 1.04494 0.92016 0.96850 1.22968 0.90799 1.03617 1.01914 1.23022 0.99110 1.02788 0.92642 1.20387 0.94733 0.94284 0.83858 0.87669 1.21438 0.97556 0.97280 0.96686 1.22783 0.99607 1.00490 0.94667 1.20575 0.84601 0.97341 0.95079 1.44233 1.13751 1.16643 1.57955 1.19381 1.27422 0.95425 0.97082 0.92040 1.25870 1.01677 1.00309 0.95328 1.70086 1.39664 1.37125 1.08899 0.85403 0.77266 0.81492 0.77477 1.19230 1.22684 1.21823 1.20036 0.96790 0.89635 0.88680 1.21123 0.93447 1.02072 0.99011 0.88501 0.94087 0.92946 0.88202 0.89071 0.67376 0.87141 0.88543 0.87890 0.87259 0.87042 0.94284 0.95223 0.94483 0.90031 0.94864 0.93065 0.94697 0.91916 0.95902 0.90622 0.96636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.73 71.98 0.70 -2.08 16 2 C 0.09 2.05 5.72 86.38 0.49 2.54 16 3 N -0.60 -19.17 2.32 -808.52 -1.87 -21.04 16 4 C 0.59 21.90 6.92 86.46 0.60 22.50 16 5 O -0.54 -24.76 12.15 -4.31 -0.05 -24.82 16 6 C -0.12 -3.63 6.56 24.05 0.16 -3.47 16 7 O -0.18 -3.64 6.32 -7.05 -0.04 -3.68 16 8 C 0.22 3.29 13.21 130.42 1.72 5.01 16 9 N -0.52 -12.15 10.89 -303.12 -3.30 -15.45 16 10 C 0.10 3.00 6.67 41.83 0.28 3.28 16 11 C -0.12 -3.73 5.67 -11.52 -0.07 -3.80 16 12 C -0.16 -4.13 10.23 30.60 0.31 -3.82 16 13 C -0.14 -3.32 10.16 30.62 0.31 -3.00 16 14 C 0.17 6.30 2.37 43.91 0.10 6.40 16 15 H 0.11 3.43 5.90 -2.39 -0.01 3.42 16 16 C -0.09 -3.75 4.09 30.23 0.12 -3.63 16 17 C -0.13 -5.01 6.40 31.80 0.20 -4.81 16 18 C 0.15 6.12 5.18 87.60 0.45 6.57 16 19 N -0.60 -29.89 2.60 -707.83 -1.84 -31.73 16 20 C -0.26 -14.52 9.59 84.03 0.81 -13.71 16 21 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 22 C -0.04 -2.00 5.32 84.86 0.45 -1.55 16 23 N -0.91 -54.08 8.85 21.65 0.19 -53.89 16 24 Si 0.95 46.31 29.55 68.60 2.03 48.34 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 28 C 0.17 8.28 5.23 83.58 0.44 8.72 16 29 C -0.12 -5.40 3.73 28.35 0.11 -5.29 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.85 7.03 -2.38 -0.02 0.83 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.82 7.80 -2.39 -0.02 1.80 16 34 H 0.09 1.81 5.45 -2.39 -0.01 1.80 16 35 H 0.31 0.27 8.06 -2.91 -0.02 0.25 16 36 H 0.11 4.13 6.55 -2.39 -0.02 4.11 16 37 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.11 2.45 7.92 -2.39 -0.02 2.43 16 40 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.04 1.53 7.82 -2.39 -0.02 1.52 16 42 H 0.03 1.56 6.36 -2.39 -0.02 1.54 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 45 H 0.03 1.33 8.00 -2.39 -0.02 1.31 16 46 H 0.05 1.78 6.88 -2.39 -0.02 1.76 16 47 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 48 H 0.06 3.49 6.09 -2.38 -0.01 3.47 16 49 H 0.02 0.97 8.12 -2.39 -0.02 0.95 16 50 H 0.08 4.28 4.41 -2.38 -0.01 4.27 16 51 H 0.01 0.70 8.02 -2.39 -0.02 0.68 16 Total: -1.00 -74.41 388.34 3.24 -71.17 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.94 Total: 21.25 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 7.20 Total: 9.85 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -6.82 Total: -122.12 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.10 Total: -28.50 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -74.41 3.24 -71.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998114942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.906 kcal (2) G-P(sol) polarization free energy of solvation -74.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds