Wall clock time and date at job start Wed Apr 1 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47039 * 2 1 4 4 C 1.34766 * 120.00663 * 83.28996 * 3 2 1 5 5 O 1.21513 * 120.00798 * 184.82671 * 4 3 2 6 6 C 1.48164 * 119.99958 * 4.82788 * 4 3 2 7 7 C 1.39159 * 119.69230 * 171.91351 * 6 4 3 8 8 C 1.38736 * 119.18495 * 179.72637 * 7 6 4 9 9 C 1.38371 * 118.56313 * 0.02562 * 8 7 6 10 10 C 1.39241 * 119.30126 * 359.97438 * 9 8 7 11 11 O 1.35669 * 119.61433 * 180.02562 * 10 9 8 12 12 C 1.42905 * 117.00087 * 180.02562 * 11 10 9 13 13 N 1.31926 * 120.77343 * 0.02562 * 10 9 8 14 14 C 1.46503 * 119.99551 * 263.29322 * 3 2 1 15 15 H 1.08995 * 110.21670 * 359.97438 * 14 3 2 16 16 C 1.50118 * 110.25051 * 121.93395 * 14 3 2 17 17 C 1.54639 * 110.92965 * 216.54182 * 16 14 3 18 18 C 1.54896 * 110.19037 * 321.33682 * 17 16 14 19 19 N 1.43433 * 116.07778 * 318.52968 * 18 17 16 20 20 C 1.36943 * 120.53507 * 271.58444 * 19 18 17 21 21 H 1.07993 * 119.99934 * 339.08427 * 20 19 18 22 22 C 1.38807 * 119.99661 * 159.07847 * 20 19 18 23 23 N 1.31619 * 120.00224 * 342.67350 * 22 20 19 24 24 Si 1.86802 * 120.00003 * 162.67956 * 22 20 19 25 25 H 1.48506 * 109.47275 * 59.99616 * 24 22 20 26 26 H 1.48497 * 109.47513 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47039 * 300.00322 * 24 22 20 28 28 C 1.50163 * 118.92956 * 91.56718 * 19 18 17 29 29 C 1.46240 * 107.53242 * 289.59043 * 28 19 18 30 30 H 1.09002 * 109.46759 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47516 * 300.00700 * 1 2 3 32 32 H 1.09004 * 109.46765 * 60.00891 * 1 2 3 33 33 H 1.08995 * 109.47516 * 239.99300 * 2 1 3 34 34 H 1.09004 * 109.46765 * 119.99109 * 2 1 3 35 35 H 1.08006 * 120.40741 * 359.74580 * 7 6 4 36 36 H 1.08004 * 120.72223 * 180.02562 * 8 7 6 37 37 H 1.08002 * 120.34842 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47042 * 300.00039 * 12 11 10 39 39 H 1.09001 * 109.47034 * 60.00118 * 12 11 10 40 40 H 1.09000 * 109.47215 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.21175 * 336.99280 * 16 14 3 42 42 H 1.09002 * 109.21249 * 96.31019 * 16 14 3 43 43 H 1.08998 * 109.42806 * 201.05290 * 17 16 14 44 44 H 1.09000 * 109.24280 * 81.49879 * 17 16 14 45 45 H 1.08996 * 108.16259 * 196.80720 * 18 17 16 46 46 H 1.09003 * 108.00190 * 80.11723 * 18 17 16 47 47 H 0.97008 * 119.99822 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.85365 * 170.08191 * 28 19 18 49 49 H 1.09001 * 109.84603 * 49.09288 * 28 19 18 50 50 H 1.09007 * 108.51876 * 297.16655 * 29 28 19 51 51 H 1.09000 * 108.40332 * 179.56317 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1144 2.0621 1.1590 5 8 2.4352 3.2341 1.1506 6 6 1.8288 1.3816 2.4438 7 6 2.0913 2.0359 3.6436 8 6 1.8145 1.3911 4.8405 9 6 1.2851 0.1135 4.7966 10 6 1.0468 -0.4834 3.5614 11 8 0.5274 -1.7357 3.5109 12 6 0.3059 -2.2945 2.2145 13 7 1.3201 0.1546 2.4395 14 6 2.4021 2.0224 -1.2601 15 1 2.2623 1.3320 -2.0919 16 6 1.5931 3.2682 -1.4768 17 6 1.2538 3.4531 -2.9741 18 6 2.4608 3.0369 -3.8512 19 7 3.7524 3.4479 -3.3822 20 6 4.2674 4.6655 -3.7397 21 1 3.8925 5.1742 -4.6154 22 6 5.2711 5.2456 -2.9764 23 7 5.4944 4.8212 -1.7507 24 14 6.3050 6.6288 -3.6887 25 1 5.4249 7.7690 -4.0504 26 1 7.3002 7.0730 -2.6801 27 1 7.0113 6.1446 -4.9020 28 6 4.5308 2.5218 -2.4926 29 6 3.8545 2.4841 -1.1965 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.5050 3.0336 3.6431 36 1 2.0081 1.8759 5.7860 37 1 1.0592 -0.4153 5.7108 38 1 -0.3921 -1.6655 1.6621 39 1 1.2518 -2.3478 1.6754 40 1 -0.1103 -3.2967 2.3170 41 1 0.6679 3.1990 -0.9047 42 1 2.1635 4.1307 -1.1319 43 1 1.0121 4.4987 -3.1646 44 1 0.3931 2.8337 -3.2265 45 1 2.3142 3.4502 -4.8490 46 1 2.4591 1.9499 -3.9326 47 1 6.1962 5.2265 -1.2174 48 1 5.5474 2.8950 -2.3687 49 1 4.5529 1.5226 -2.9276 50 1 3.8813 3.4838 -0.7628 51 1 4.4042 1.8087 -0.5410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998167699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:22 Heat of formation + Delta-G solvation = 28.207978 kcal Electronic energy + Delta-G solvation = -32956.894687 eV Core-core repulsion = 28859.271096 eV Total energy + Delta-G solvation = -4097.623590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.17178 -39.69912 -38.09550 -37.08992 -35.61598 -33.38424 -32.45973 -31.57889 -30.81976 -30.46874 -29.65387 -27.43166 -26.09682 -25.03949 -23.68697 -23.07437 -22.99186 -22.84959 -20.70485 -19.63163 -18.86062 -18.15488 -17.05356 -16.59223 -16.31866 -16.22854 -16.09169 -15.51479 -15.02701 -14.76208 -14.36881 -14.16669 -13.95699 -13.73491 -13.66515 -13.38531 -13.16793 -13.13142 -12.92358 -12.63540 -12.33755 -12.02486 -11.91183 -11.69539 -11.61167 -11.41067 -11.28834 -11.11027 -10.98194 -10.68720 -10.58819 -10.36494 -10.14227 -10.07834 -9.90857 -9.73970 -9.68217 -9.27901 -9.14556 -9.04545 -8.72719 -8.40648 -8.03123 -6.63602 -5.65983 -3.06751 0.57942 1.07231 2.82331 2.93367 3.23655 3.45512 3.51442 3.52301 3.81258 3.95310 4.59247 4.61547 4.77396 4.81821 5.00113 5.04527 5.09192 5.22546 5.27406 5.37124 5.43551 5.48028 5.51594 5.58107 5.68006 5.80499 5.85875 5.90397 5.96423 5.99118 6.09891 6.14028 6.22515 6.30342 6.38307 6.43062 6.55707 6.65200 6.78444 6.95044 6.96431 6.98476 7.12159 7.15658 7.33038 7.39458 7.50005 7.69846 7.83562 7.89056 8.17876 8.52277 8.56000 9.29250 9.96670 10.48003 11.39877 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.003231 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.300464 B = 8662.966945 C = 9623.903220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.096 3.904 3 N -0.585 5.585 4 C 0.559 3.441 5 O -0.505 6.505 6 C 0.128 3.872 7 C -0.149 4.149 8 C -0.047 4.047 9 C -0.174 4.174 10 C 0.309 3.691 11 O -0.307 6.307 12 C 0.027 3.973 13 N -0.504 5.504 14 C 0.152 3.848 15 H 0.080 0.920 16 C -0.105 4.105 17 C -0.144 4.144 18 C 0.157 3.843 19 N -0.588 5.588 20 C -0.248 4.248 21 H 0.067 0.933 22 C 0.000 4.000 23 N -0.897 5.897 24 Si 0.901 3.099 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.165 3.835 29 C -0.132 4.132 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.034 0.966 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.040 0.960 45 H 0.032 0.968 46 H 0.025 0.975 47 H 0.252 0.748 48 H 0.102 0.898 49 H 0.000 1.000 50 H 0.115 0.885 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 -14.773 11.526 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.027 4.027 3 N -0.317 5.317 4 C 0.344 3.656 5 O -0.379 6.379 6 C -0.009 4.009 7 C -0.170 4.170 8 C -0.073 4.073 9 C -0.195 4.195 10 C 0.128 3.872 11 O -0.214 6.214 12 C -0.068 4.068 13 N -0.231 5.231 14 C 0.051 3.949 15 H 0.098 0.902 16 C -0.143 4.143 17 C -0.186 4.186 18 C 0.028 3.972 19 N -0.309 5.309 20 C -0.377 4.377 21 H 0.085 0.915 22 C -0.198 4.198 23 N -0.543 5.543 24 Si 0.731 3.269 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.213 1.213 28 C 0.041 3.959 29 C -0.171 4.171 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.120 0.880 49 H 0.018 0.982 50 H 0.133 0.867 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.461 -14.649 10.990 21.091 hybrid contribution 0.453 1.007 0.337 1.155 sum -10.009 -13.642 11.327 20.361 Atomic orbital electron populations 1.22179 0.96573 1.00984 1.01698 1.22124 0.94294 0.82784 1.03528 1.48163 1.62988 1.13956 1.06587 1.17822 0.78922 0.86191 0.82679 1.90878 1.46309 1.14687 1.86044 1.21154 0.95634 0.89136 0.94983 1.22036 1.01211 1.02373 0.91382 1.21442 0.93919 0.93045 0.98861 1.21239 1.04797 0.96550 0.96904 1.19990 0.91479 0.85723 0.89979 1.86238 1.77287 1.25662 1.32228 1.23245 1.02219 0.98464 0.82861 1.67859 1.16992 1.10012 1.28239 1.20677 0.97446 0.94270 0.82523 0.90192 1.21655 0.98246 0.98688 0.95753 1.22874 0.98904 1.00528 0.96247 1.20405 0.85667 0.95968 0.95174 1.44266 1.12217 1.16813 1.57624 1.19171 1.16729 0.95960 1.05888 0.91483 1.24879 1.01522 0.98366 0.94987 1.69969 1.33471 1.43897 1.06937 0.86391 0.80330 0.82114 0.78033 1.21183 1.21776 1.21326 1.20271 0.98700 0.89092 0.87829 1.21339 0.91308 1.04289 1.00205 0.92319 0.92598 0.93077 0.91769 0.87146 0.83055 0.83475 0.83940 0.91263 0.92070 0.88724 0.94725 0.89688 0.92914 0.94136 0.94986 0.95666 0.93719 0.88018 0.98152 0.86671 0.95776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.28 37.16 0.31 -1.49 16 2 C 0.10 1.25 5.71 -4.04 -0.02 1.23 16 3 N -0.59 -9.93 2.32 -169.02 -0.39 -10.32 16 4 C 0.56 10.13 6.93 -12.19 -0.08 10.05 16 5 O -0.51 -11.04 13.65 5.35 0.07 -10.96 16 6 C 0.13 1.87 6.57 -83.02 -0.55 1.33 16 7 C -0.15 -1.88 9.62 -39.06 -0.38 -2.26 16 8 C -0.05 -0.44 10.16 -39.35 -0.40 -0.84 16 9 C -0.17 -1.64 10.05 -39.16 -0.39 -2.03 16 10 C 0.31 3.47 7.49 -17.14 -0.13 3.34 16 11 O -0.31 -3.11 10.48 -18.71 -0.20 -3.31 16 12 C 0.03 0.21 9.85 101.05 1.00 1.20 16 13 N -0.50 -6.38 3.41 -9.87 -0.03 -6.41 16 14 C 0.15 2.95 2.37 -69.60 -0.17 2.78 16 15 H 0.08 1.48 5.91 -51.93 -0.31 1.17 16 16 C -0.11 -2.19 4.08 -27.30 -0.11 -2.30 16 17 C -0.14 -2.83 6.40 -24.87 -0.16 -2.99 16 18 C 0.16 3.34 5.18 -4.66 -0.02 3.31 16 19 N -0.59 -14.67 2.61 -175.09 -0.46 -15.13 16 20 C -0.25 -6.81 9.67 -15.06 -0.15 -6.95 16 21 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 22 C 0.00 0.01 5.01 -17.43 -0.09 -0.08 16 23 N -0.90 -25.66 9.27 55.49 0.51 -25.15 16 24 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 C 0.16 3.96 5.25 -5.21 -0.03 3.93 16 29 C -0.13 -3.01 3.76 -30.19 -0.11 -3.12 16 30 H 0.06 0.52 6.44 -51.93 -0.33 0.18 16 31 H 0.05 0.71 6.93 -51.93 -0.36 0.35 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.78 7.80 -51.93 -0.41 0.38 16 34 H 0.11 1.40 3.87 -53.58 -0.21 1.20 16 35 H 0.15 1.96 7.66 -52.48 -0.40 1.56 16 36 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.07 0.55 5.10 -51.93 -0.26 0.28 16 39 H 0.06 0.48 7.13 -51.93 -0.37 0.11 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.03 0.69 7.82 -51.93 -0.41 0.29 16 42 H 0.08 2.17 6.36 -51.93 -0.33 1.84 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.03 0.67 7.99 -51.93 -0.41 0.26 16 46 H 0.03 0.49 6.88 -51.93 -0.36 0.13 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.10 2.74 5.77 -51.93 -0.30 2.44 16 49 H 0.00 0.01 8.12 -51.93 -0.42 -0.41 16 50 H 0.12 3.13 4.72 -51.92 -0.25 2.88 16 51 H 0.02 0.54 8.02 -51.93 -0.42 0.12 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -31.25 380.40 -8.90 -40.14 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.63 Total: 3.31 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -1.48 Total: 5.10 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.37 Total: -57.01 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.12 Total: -14.27 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.25 -8.90 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998167699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.353 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds