Wall clock time and date at job start Wed Apr 1 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47039 * 2 1 4 4 C 1.34766 * 120.00663 * 83.28996 * 3 2 1 5 5 O 1.21513 * 120.00798 * 184.82671 * 4 3 2 6 6 C 1.48164 * 119.99958 * 4.82788 * 4 3 2 7 7 C 1.39159 * 119.69230 * 171.91351 * 6 4 3 8 8 C 1.38736 * 119.18495 * 179.72637 * 7 6 4 9 9 C 1.38371 * 118.56313 * 0.02562 * 8 7 6 10 10 C 1.39241 * 119.30126 * 359.97438 * 9 8 7 11 11 O 1.35669 * 119.61433 * 180.02562 * 10 9 8 12 12 C 1.42905 * 117.00087 * 180.02562 * 11 10 9 13 13 N 1.31926 * 120.77343 * 0.02562 * 10 9 8 14 14 C 1.46503 * 119.99551 * 263.29322 * 3 2 1 15 15 H 1.08995 * 110.21670 * 359.97438 * 14 3 2 16 16 C 1.50118 * 110.25051 * 121.93395 * 14 3 2 17 17 C 1.54639 * 110.92965 * 216.54182 * 16 14 3 18 18 C 1.54896 * 110.19037 * 321.33682 * 17 16 14 19 19 N 1.43433 * 116.07778 * 318.52968 * 18 17 16 20 20 C 1.36943 * 120.53507 * 271.58444 * 19 18 17 21 21 H 1.07993 * 119.99934 * 339.08427 * 20 19 18 22 22 C 1.38807 * 119.99661 * 159.07847 * 20 19 18 23 23 N 1.31619 * 120.00224 * 342.67350 * 22 20 19 24 24 Si 1.86802 * 120.00003 * 162.67956 * 22 20 19 25 25 H 1.48506 * 109.47275 * 59.99616 * 24 22 20 26 26 H 1.48497 * 109.47513 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47039 * 300.00322 * 24 22 20 28 28 C 1.50163 * 118.92956 * 91.56718 * 19 18 17 29 29 C 1.46240 * 107.53242 * 289.59043 * 28 19 18 30 30 H 1.09002 * 109.46759 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47516 * 300.00700 * 1 2 3 32 32 H 1.09004 * 109.46765 * 60.00891 * 1 2 3 33 33 H 1.08995 * 109.47516 * 239.99300 * 2 1 3 34 34 H 1.09004 * 109.46765 * 119.99109 * 2 1 3 35 35 H 1.08006 * 120.40741 * 359.74580 * 7 6 4 36 36 H 1.08004 * 120.72223 * 180.02562 * 8 7 6 37 37 H 1.08002 * 120.34842 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47042 * 300.00039 * 12 11 10 39 39 H 1.09001 * 109.47034 * 60.00118 * 12 11 10 40 40 H 1.09000 * 109.47215 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.21175 * 336.99280 * 16 14 3 42 42 H 1.09002 * 109.21249 * 96.31019 * 16 14 3 43 43 H 1.08998 * 109.42806 * 201.05290 * 17 16 14 44 44 H 1.09000 * 109.24280 * 81.49879 * 17 16 14 45 45 H 1.08996 * 108.16259 * 196.80720 * 18 17 16 46 46 H 1.09003 * 108.00190 * 80.11723 * 18 17 16 47 47 H 0.97008 * 119.99822 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.85365 * 170.08191 * 28 19 18 49 49 H 1.09001 * 109.84603 * 49.09288 * 28 19 18 50 50 H 1.09007 * 108.51876 * 297.16655 * 29 28 19 51 51 H 1.09000 * 108.40332 * 179.56317 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1144 2.0621 1.1590 5 8 2.4352 3.2341 1.1506 6 6 1.8288 1.3816 2.4438 7 6 2.0913 2.0359 3.6436 8 6 1.8145 1.3911 4.8405 9 6 1.2851 0.1135 4.7966 10 6 1.0468 -0.4834 3.5614 11 8 0.5274 -1.7357 3.5109 12 6 0.3059 -2.2945 2.2145 13 7 1.3201 0.1546 2.4395 14 6 2.4021 2.0224 -1.2601 15 1 2.2623 1.3320 -2.0919 16 6 1.5931 3.2682 -1.4768 17 6 1.2538 3.4531 -2.9741 18 6 2.4608 3.0369 -3.8512 19 7 3.7524 3.4479 -3.3822 20 6 4.2674 4.6655 -3.7397 21 1 3.8925 5.1742 -4.6154 22 6 5.2711 5.2456 -2.9764 23 7 5.4944 4.8212 -1.7507 24 14 6.3050 6.6288 -3.6887 25 1 5.4249 7.7690 -4.0504 26 1 7.3002 7.0730 -2.6801 27 1 7.0113 6.1446 -4.9020 28 6 4.5308 2.5218 -2.4926 29 6 3.8545 2.4841 -1.1965 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.5050 3.0336 3.6431 36 1 2.0081 1.8759 5.7860 37 1 1.0592 -0.4153 5.7108 38 1 -0.3921 -1.6655 1.6621 39 1 1.2518 -2.3478 1.6754 40 1 -0.1103 -3.2967 2.3170 41 1 0.6679 3.1990 -0.9047 42 1 2.1635 4.1307 -1.1319 43 1 1.0121 4.4987 -3.1646 44 1 0.3931 2.8337 -3.2265 45 1 2.3142 3.4502 -4.8490 46 1 2.4591 1.9499 -3.9326 47 1 6.1962 5.2265 -1.2174 48 1 5.5474 2.8950 -2.3687 49 1 4.5529 1.5226 -2.9276 50 1 3.8813 3.4838 -0.7628 51 1 4.4042 1.8087 -0.5410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998167699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:21 Heat of formation + Delta-G solvation = 10.008932 kcal Electronic energy + Delta-G solvation = -32957.683856 eV Core-core repulsion = 28859.271096 eV Total energy + Delta-G solvation = -4098.412760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.20100 -40.96676 -39.26140 -38.44742 -37.01818 -35.00385 -33.72626 -33.02454 -32.43615 -31.73632 -30.94049 -28.29517 -27.76437 -26.39528 -25.07545 -24.88858 -24.01344 -23.87458 -22.17765 -21.24188 -20.37249 -19.03801 -18.64504 -18.13582 -17.37281 -17.13903 -17.02167 -16.89126 -16.70986 -16.15104 -15.62470 -15.56603 -15.39492 -15.14312 -15.02435 -14.97138 -14.50482 -14.23818 -14.03705 -13.91080 -13.53853 -13.28721 -13.21754 -13.16945 -13.07118 -13.00710 -12.61763 -12.53795 -12.41361 -12.25437 -12.04301 -11.94320 -11.80114 -11.66856 -11.58828 -11.33929 -11.00605 -10.97752 -10.85597 -10.44973 -10.19177 -9.69973 -9.40379 -8.65212 -7.76969 -5.19517 -0.38415 0.23185 1.47750 1.49050 1.55960 1.75847 1.93576 2.11901 2.55987 2.77534 2.95179 3.34681 3.62543 3.64332 3.94188 3.99463 4.02363 4.14340 4.20898 4.25530 4.30133 4.44770 4.46790 4.49138 4.51087 4.55286 4.58179 4.68814 4.70618 4.82832 4.85261 4.91997 4.93264 4.96317 5.08901 5.14553 5.19511 5.25419 5.27218 5.33555 5.35400 5.43135 5.47392 5.56601 5.67356 5.72001 5.86375 6.14825 6.21293 6.43879 6.48596 6.62352 7.18799 7.21592 7.94633 8.43045 9.25749 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.003231 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.300464 B = 8662.966945 C = 9623.903220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.092 3.908 3 N -0.586 5.586 4 C 0.551 3.449 5 O -0.559 6.559 6 C 0.101 3.899 7 C -0.159 4.159 8 C -0.035 4.035 9 C -0.158 4.158 10 C 0.299 3.701 11 O -0.309 6.309 12 C 0.020 3.980 13 N -0.504 5.504 14 C 0.166 3.834 15 H 0.102 0.898 16 C -0.089 4.089 17 C -0.135 4.135 18 C 0.150 3.850 19 N -0.602 5.602 20 C -0.258 4.258 21 H 0.067 0.933 22 C -0.050 4.050 23 N -0.919 5.919 24 Si 0.961 3.039 25 H -0.283 1.283 26 H -0.298 1.298 27 H -0.279 1.279 28 C 0.169 3.831 29 C -0.114 4.114 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.186 0.814 37 H 0.177 0.823 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.122 0.878 41 H 0.037 0.963 42 H 0.028 0.972 43 H 0.036 0.964 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.052 0.948 47 H 0.243 0.757 48 H 0.067 0.933 49 H 0.026 0.974 50 H 0.068 0.932 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.365 -17.714 12.151 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 N -0.317 5.317 4 C 0.338 3.662 5 O -0.437 6.437 6 C -0.034 4.034 7 C -0.181 4.181 8 C -0.060 4.060 9 C -0.179 4.179 10 C 0.118 3.882 11 O -0.216 6.216 12 C -0.074 4.074 13 N -0.232 5.232 14 C 0.063 3.937 15 H 0.119 0.881 16 C -0.128 4.128 17 C -0.177 4.177 18 C 0.022 3.978 19 N -0.324 5.324 20 C -0.389 4.389 21 H 0.085 0.915 22 C -0.245 4.245 23 N -0.565 5.565 24 Si 0.790 3.210 25 H -0.209 1.209 26 H -0.225 1.225 27 H -0.205 1.205 28 C 0.045 3.955 29 C -0.153 4.153 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.155 0.845 36 H 0.203 0.797 37 H 0.194 0.806 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.140 0.860 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.085 0.915 49 H 0.044 0.956 50 H 0.087 0.913 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -12.301 -17.641 11.590 24.430 hybrid contribution 0.946 1.814 0.222 2.058 sum -11.355 -15.827 11.812 22.781 Atomic orbital electron populations 1.22096 0.95045 1.02725 1.00564 1.22404 0.95474 0.80473 1.04614 1.48247 1.62623 1.15320 1.05461 1.18430 0.77814 0.85800 0.84140 1.90852 1.48760 1.17065 1.87029 1.20642 0.98723 0.90440 0.93639 1.22103 1.01609 1.02112 0.92309 1.21813 0.92375 0.92903 0.98870 1.21688 1.02470 0.96197 0.97532 1.20334 0.91474 0.86201 0.90237 1.86259 1.76971 1.24856 1.33465 1.23461 1.02256 0.99682 0.82017 1.67661 1.17078 1.09079 1.29370 1.20379 0.94593 0.94200 0.84479 0.88068 1.21418 0.97514 0.97276 0.96569 1.22803 0.99646 1.00439 0.94771 1.20580 0.84469 0.97554 0.95206 1.44423 1.13984 1.16228 1.57740 1.19443 1.16851 0.96854 1.05706 0.91524 1.25573 1.02829 1.00824 0.95301 1.70195 1.33493 1.44996 1.07847 0.85443 0.78651 0.79675 0.77215 1.20878 1.22476 1.20471 1.20133 0.97063 0.89794 0.88534 1.21040 0.93706 1.01594 0.98993 0.89087 0.94071 0.93813 0.90279 0.86496 0.84523 0.79696 0.80592 0.91455 0.92229 0.85954 0.94440 0.95323 0.94503 0.90109 0.94612 0.92978 0.94758 0.91501 0.95552 0.91321 0.96508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.28 71.98 0.60 -2.44 16 2 C 0.09 2.25 5.71 86.38 0.49 2.74 16 3 N -0.59 -20.04 2.32 -806.96 -1.87 -21.91 16 4 C 0.55 20.95 6.93 86.88 0.60 21.55 16 5 O -0.56 -26.53 13.65 -3.76 -0.05 -26.58 16 6 C 0.10 3.00 6.57 41.85 0.27 3.28 16 7 C -0.16 -4.07 9.62 22.61 0.22 -3.86 16 8 C -0.03 -0.57 10.16 22.42 0.23 -0.34 16 9 C -0.16 -2.45 10.05 22.54 0.23 -2.22 16 10 C 0.30 5.97 7.49 84.92 0.64 6.60 16 11 O -0.31 -5.28 10.48 -89.86 -0.94 -6.22 16 12 C 0.02 0.25 9.85 113.37 1.12 1.36 16 13 N -0.50 -12.16 3.41 -298.19 -1.02 -13.18 16 14 C 0.17 6.47 2.37 43.91 0.10 6.57 16 15 H 0.10 3.52 5.91 -2.39 -0.01 3.51 16 16 C -0.09 -3.82 4.08 30.22 0.12 -3.70 16 17 C -0.14 -5.22 6.40 31.80 0.20 -5.01 16 18 C 0.15 6.19 5.18 87.59 0.45 6.64 16 19 N -0.60 -30.45 2.61 -707.87 -1.85 -32.30 16 20 C -0.26 -14.52 9.67 84.03 0.81 -13.70 16 21 H 0.07 3.68 7.87 -2.91 -0.02 3.65 16 22 C -0.05 -2.87 5.01 84.86 0.43 -2.44 16 23 N -0.92 -55.51 9.27 21.65 0.20 -55.31 16 24 Si 0.96 46.73 29.59 68.60 2.03 48.76 16 25 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 28 C 0.17 8.30 5.25 83.58 0.44 8.74 16 29 C -0.11 -5.41 3.76 28.36 0.11 -5.31 16 30 H 0.09 1.28 6.44 -2.39 -0.02 1.27 16 31 H 0.04 0.99 6.93 -2.39 -0.02 0.97 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.71 7.80 -2.39 -0.02 1.69 16 34 H 0.12 2.78 3.87 -5.66 -0.02 2.76 16 35 H 0.14 3.82 7.66 -2.91 -0.02 3.80 16 36 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.07 0.85 5.10 -2.39 -0.01 0.84 16 39 H 0.06 0.76 7.13 -2.39 -0.02 0.74 16 40 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.04 1.54 7.82 -2.39 -0.02 1.52 16 42 H 0.03 1.55 6.36 -2.39 -0.02 1.53 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.04 1.45 7.99 -2.39 -0.02 1.43 16 46 H 0.05 1.87 6.88 -2.39 -0.02 1.86 16 47 H 0.24 14.59 8.31 -92.70 -0.77 13.82 16 48 H 0.07 3.77 5.77 -2.39 -0.01 3.76 16 49 H 0.03 1.15 8.12 -2.39 -0.02 1.13 16 50 H 0.07 4.01 4.72 -2.38 -0.01 4.00 16 51 H 0.02 0.78 8.02 -2.39 -0.02 0.76 16 Total: -1.00 -74.09 380.40 4.49 -69.60 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.93 Total: 18.67 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 7.06 Total: 18.47 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -4.54 Total: -122.70 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.99 Total: -32.79 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -74.09 4.49 -69.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998167699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.605 kcal (2) G-P(sol) polarization free energy of solvation -74.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds