Wall clock time and date at job start Wed Apr 1 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46970 * 2 1 4 4 C 1.34774 * 120.00067 * 94.98138 * 3 2 1 5 5 O 1.21653 * 120.00072 * 19.81667 * 4 3 2 6 6 C 1.47088 * 120.00005 * 199.81303 * 4 3 2 7 7 C 1.39335 * 120.58348 * 163.78417 * 6 4 3 8 8 C 1.39470 * 118.95716 * 179.76070 * 7 6 4 9 9 C 1.35763 * 120.12939 * 0.54696 * 8 7 6 10 10 N 1.35433 * 121.23011 * 359.70180 * 9 8 7 11 11 C 1.46493 * 119.47281 * 180.02562 * 10 9 8 12 12 C 1.34652 * 121.05575 * 0.02562 * 10 9 8 13 13 O 1.21888 * 120.10240 * 179.97438 * 12 10 9 14 14 C 1.46497 * 119.99993 * 274.98085 * 3 2 1 15 15 H 1.09004 * 109.48881 * 349.45304 * 14 3 2 16 16 C 1.45462 * 118.06171 * 120.62719 * 13 12 10 17 17 C 1.47102 * 108.89307 * 223.55334 * 16 13 12 18 18 C 1.54863 * 110.32377 * 351.13848 * 17 16 13 19 19 N 1.44580 * 109.59936 * 288.73812 * 18 17 16 20 20 C 1.36941 * 118.63714 * 270.72061 * 19 18 17 21 21 H 1.08006 * 120.00076 * 34.85318 * 20 19 18 22 22 C 1.38806 * 120.00301 * 214.84355 * 20 19 18 23 23 N 1.31624 * 119.99676 * 5.16448 * 22 20 19 24 24 Si 1.86798 * 120.00601 * 185.16086 * 22 20 19 25 25 H 1.48499 * 109.46715 * 89.99876 * 24 22 20 26 26 H 1.48495 * 109.47527 * 210.00506 * 24 22 20 27 27 H 1.48501 * 109.46799 * 330.00669 * 24 22 20 28 28 C 1.47594 * 122.71740 * 90.70244 * 19 18 17 29 29 C 1.48998 * 109.58016 * 254.08423 * 13 12 10 30 30 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47255 * 300.00059 * 1 2 3 32 32 H 1.08993 * 109.47391 * 60.00188 * 1 2 3 33 33 H 1.08998 * 109.46748 * 239.99982 * 2 1 3 34 34 H 1.09001 * 109.47165 * 119.99814 * 2 1 3 35 35 H 1.08005 * 120.52548 * 0.02562 * 7 6 4 36 36 H 1.08002 * 119.93686 * 180.26609 * 8 7 6 37 37 H 1.08003 * 119.38380 * 179.72456 * 9 8 7 38 38 H 1.09002 * 109.47455 * 263.62080 * 11 10 9 39 39 H 1.09006 * 109.47155 * 23.61649 * 11 10 9 40 40 H 1.09000 * 109.47787 * 143.61985 * 11 10 9 41 41 H 1.06473 * 78.30506 * 92.33173 * 13 12 10 42 42 H 1.08995 * 140.50210 * 24.07722 * 16 13 12 43 43 H 1.09004 * 109.32634 * 111.40081 * 17 16 13 44 44 H 1.08998 * 109.32505 * 230.87366 * 17 16 13 45 45 H 1.08999 * 109.45038 * 48.77079 * 18 17 16 46 46 H 1.08990 * 109.44966 * 168.71742 * 18 17 16 47 47 H 0.96997 * 119.99842 * 179.97438 * 23 22 20 48 48 H 1.08997 * 108.95106 * 78.57488 * 28 19 18 49 49 H 1.09004 * 108.94862 * 197.29162 * 28 19 18 50 50 H 1.09010 * 135.74154 * 335.00172 * 29 13 12 51 51 H 1.06165 * 74.83539 * 286.21135 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3385 1.9828 1.1628 5 8 2.5729 1.3121 2.1502 6 6 2.4045 3.4503 1.2378 7 6 2.3983 4.0980 2.4714 8 6 2.4673 5.4907 2.5032 9 6 2.5279 6.1966 1.3451 10 7 2.5290 5.5738 0.1424 11 6 2.5961 6.3735 -1.0832 12 6 2.4695 4.2315 0.0552 13 8 2.4711 3.6891 -1.0364 14 6 2.1586 2.1085 -1.2639 15 1 2.0372 1.4164 -2.0972 16 6 3.5412 2.7491 -1.3319 17 6 4.0283 2.9958 -2.6978 18 6 3.1034 4.0028 -3.4250 19 7 1.8403 3.3686 -3.7295 20 6 1.7092 2.7050 -4.9202 21 1 2.5516 2.1735 -5.3377 22 6 0.4937 2.7154 -5.5904 23 7 -0.5026 3.4451 -5.1351 24 14 0.2719 1.6938 -7.1384 25 1 -0.2238 0.3425 -6.7729 26 1 -0.7112 2.3566 -8.0324 27 1 1.5745 1.5699 -7.8406 28 6 0.6864 3.4065 -2.8099 29 6 1.1037 3.1845 -1.3453 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3453 3.5305 3.3888 36 1 2.4679 6.0088 3.4508 37 1 2.5764 7.2748 1.3836 38 1 1.5900 6.5232 -1.4750 39 1 3.0473 7.3407 -0.8618 40 1 3.2009 5.8517 -1.8250 41 1 3.5090 3.6994 -0.7990 42 1 4.2507 2.0957 -0.8242 43 1 5.0389 3.4018 -2.6526 44 1 4.0440 2.0563 -3.2503 45 1 2.9304 4.8661 -2.7824 46 1 3.5780 4.3285 -4.3505 47 1 -1.3519 3.4526 -5.6037 48 1 0.1975 4.3769 -2.8952 49 1 -0.0205 2.6280 -3.0966 50 1 0.2331 2.8822 -0.7631 51 1 1.5030 4.1137 -0.9387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998174858.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:14 Heat of formation + Delta-G solvation = 521.177763 kcal Electronic energy + Delta-G solvation = -35413.754477 eV Core-core repulsion = 31337.507661 eV Total energy + Delta-G solvation = -4076.246816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -48.71708 -39.17400 -39.02240 -36.58992 -35.40648 -34.53640 -33.68046 -32.36019 -31.27293 -30.58886 -28.73840 -27.53333 -27.00584 -25.66494 -24.80098 -24.21521 -23.13321 -22.15155 -21.37029 -20.31365 -18.86681 -18.82373 -18.47591 -17.90909 -16.64230 -16.36233 -15.56313 -15.45954 -15.30077 -14.67501 -14.53845 -14.44546 -14.15895 -13.96717 -13.59328 -13.54039 -13.15175 -13.07498 -12.68956 -12.62917 -12.19298 -12.13830 -11.95400 -11.73446 -11.60191 -11.57438 -11.32306 -11.00100 -10.96551 -10.77395 -10.72747 -10.65270 -10.47565 -10.20982 -9.85069 -9.46552 -9.24182 -9.08390 -8.69387 -8.65377 -8.59009 -8.15654 -6.81045 -6.00909 -4.78351 -3.56592 1.45664 3.02273 3.11617 3.20027 3.23430 3.31738 3.31913 3.60585 4.05404 4.26525 4.30132 4.47209 4.64996 4.95773 5.11616 5.15576 5.18933 5.23167 5.30045 5.37187 5.42054 5.48913 5.54425 5.57354 5.60364 5.70236 5.71924 5.82750 5.84504 5.89609 6.01085 6.08155 6.12798 6.13368 6.22280 6.35668 6.42191 6.54099 6.71625 6.80480 6.82359 6.89986 6.96056 7.04731 7.16150 7.24354 7.36823 7.62485 7.72468 8.12836 8.28914 8.29714 8.58025 9.01327 9.62460 10.10379 11.06159 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.005067 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.722445 B = 5525.044424 C = 6670.856834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.625 5.625 4 C 0.568 3.432 5 O -0.553 6.553 6 C -0.140 4.140 7 C -0.026 4.026 8 C -0.323 4.323 9 C 0.199 3.801 10 N -0.509 5.509 11 C 0.053 3.947 12 C -0.340 4.340 13 O 0.003 5.997 14 C 0.213 3.787 15 H 0.076 0.924 16 C -0.211 4.211 17 C -0.157 4.157 18 C 0.135 3.865 19 N -0.586 5.586 20 C -0.270 4.270 21 H 0.064 0.936 22 C 0.017 3.983 23 N -0.902 5.902 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.278 1.278 28 C 0.182 3.818 29 C -0.261 4.261 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.302 0.698 42 H 0.126 0.874 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.257 0.743 48 H 0.038 0.962 49 H 0.082 0.918 50 H 0.140 0.860 51 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 2.848 7.857 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.358 5.358 4 C 0.362 3.638 5 O -0.433 6.433 6 C -0.146 4.146 7 C -0.046 4.046 8 C -0.352 4.352 9 C 0.066 3.934 10 N -0.214 5.214 11 C -0.089 4.089 12 C -0.467 4.467 13 O 0.086 5.914 14 C 0.108 3.892 15 H 0.094 0.906 16 C -0.242 4.242 17 C -0.198 4.198 18 C 0.008 3.992 19 N -0.307 5.307 20 C -0.399 4.399 21 H 0.082 0.918 22 C -0.183 4.183 23 N -0.544 5.544 24 Si 0.733 3.267 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.203 1.203 28 C 0.056 3.944 29 C -0.293 4.293 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.149 0.851 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.300 0.700 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.056 0.944 49 H 0.100 0.900 50 H 0.157 0.843 51 H 0.314 0.686 Dipole moment (debyes) X Y Z Total from point charges 4.853 2.229 7.806 9.458 hybrid contribution -0.229 -0.466 -0.997 1.124 sum 4.624 1.764 6.809 8.417 Atomic orbital electron populations 1.22186 0.96038 1.01993 1.02524 1.21398 0.94193 0.82393 1.02979 1.48079 1.67456 1.14063 1.06237 1.18268 0.75412 0.88048 0.82045 1.90692 1.49682 1.66462 1.36453 1.18939 1.12823 0.89756 0.93102 1.20808 0.94804 0.93868 0.95161 1.19564 1.25871 0.93859 0.95951 1.21345 0.90263 0.96395 0.85367 1.42254 1.70421 1.04591 1.04168 1.22274 1.02714 0.96211 0.87740 1.12591 1.65233 0.81941 0.86917 1.93591 0.96731 1.60162 1.40924 1.22189 0.89059 0.91890 0.86048 0.90631 1.21649 0.95799 1.04308 1.02431 1.21829 0.99736 1.03729 0.94535 1.21183 0.87581 0.92596 0.97861 1.43532 1.08541 1.61214 1.17404 1.19116 0.97512 1.26157 0.97148 0.91829 1.25279 0.97492 0.97837 0.97681 1.69944 1.03397 1.40601 1.40485 0.86291 0.77754 0.79662 0.83017 1.21279 1.21529 1.20300 1.21167 0.89687 1.01781 0.81767 1.24380 0.94299 1.05641 1.05017 0.91829 0.92646 0.91902 0.90930 0.89802 0.87363 0.86880 0.85148 0.92263 0.90873 0.90061 0.70035 0.85745 0.92167 0.90784 0.93582 0.92615 0.93306 0.94428 0.89959 0.84324 0.68626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.63 6.28 -4.04 -0.03 1.61 16 3 N -0.62 -10.01 2.26 -248.57 -0.56 -10.57 16 4 C 0.57 10.29 6.82 -12.67 -0.09 10.21 16 5 O -0.55 -11.40 16.07 5.23 0.08 -11.32 16 6 C -0.14 -2.44 5.58 -104.51 -0.58 -3.02 16 7 C -0.03 -0.44 9.69 -38.71 -0.38 -0.81 16 8 C -0.32 -4.72 9.99 -40.01 -0.40 -5.12 16 9 C 0.20 2.62 10.25 -16.85 -0.17 2.44 16 10 N -0.51 -7.11 2.95 -254.96 -0.75 -7.86 16 11 C 0.05 0.63 9.61 59.84 0.57 1.20 16 12 C -0.34 -5.30 3.44 -14.92 -0.05 -5.35 16 13 O 0.00 0.04 0.22 5.02 0.00 0.04 16 14 C 0.21 3.38 2.17 -69.22 -0.15 3.23 16 15 H 0.08 1.36 7.17 -51.93 -0.37 0.99 16 16 C -0.21 -3.10 3.59 -29.80 -0.11 -3.21 16 17 C -0.16 -2.33 5.74 -28.58 -0.16 -2.49 16 18 C 0.14 2.31 5.58 -4.08 -0.02 2.29 16 19 N -0.59 -12.09 2.25 -172.13 -0.39 -12.48 16 20 C -0.27 -6.43 9.36 -15.06 -0.14 -6.57 16 21 H 0.06 1.52 7.83 -52.48 -0.41 1.11 16 22 C 0.02 0.43 5.09 -17.43 -0.09 0.34 16 23 N -0.90 -23.41 11.00 55.49 0.61 -22.80 16 24 Si 0.90 19.96 29.56 -169.99 -5.02 14.94 16 25 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.18 3.65 4.61 -2.98 -0.01 3.63 16 29 C -0.26 -4.31 3.96 -27.32 -0.11 -4.41 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.97 7.96 -51.93 -0.41 0.55 16 34 H 0.08 1.26 7.18 -51.93 -0.37 0.88 16 35 H 0.11 1.85 7.78 -52.48 -0.41 1.44 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.13 1.25 7.95 -52.48 -0.42 0.83 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 40 H 0.08 0.99 4.57 -51.93 -0.24 0.75 16 41 H 0.30 4.50 2.61 12.76 0.03 4.54 16 42 H 0.13 1.83 7.93 -51.93 -0.41 1.42 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 0.72 3.16 -51.93 -0.16 0.55 16 46 H 0.06 0.99 7.99 -51.93 -0.41 0.58 16 47 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 48 H 0.04 0.83 7.95 -51.93 -0.41 0.42 16 49 H 0.08 1.89 6.66 -51.93 -0.35 1.55 16 50 H 0.14 2.34 7.99 -51.92 -0.41 1.93 16 51 H 0.32 5.08 1.95 5.54 0.01 5.09 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -28.23 367.41 -9.28 -37.51 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -7.26 Total: 14.93 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.53 Total: -7.93 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -1.09 Total: -53.71 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.23 -9.28 -37.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998174858.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 558.691 kcal (2) G-P(sol) polarization free energy of solvation -28.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 530.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 521.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds