Wall clock time and date at job start Wed Apr 1 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46970 * 2 1 4 4 C 1.34774 * 120.00067 * 94.98138 * 3 2 1 5 5 O 1.21653 * 120.00072 * 19.81667 * 4 3 2 6 6 C 1.47088 * 120.00005 * 199.81303 * 4 3 2 7 7 C 1.39335 * 120.58348 * 163.78417 * 6 4 3 8 8 C 1.39470 * 118.95716 * 179.76070 * 7 6 4 9 9 C 1.35763 * 120.12939 * 0.54696 * 8 7 6 10 10 N 1.35433 * 121.23011 * 359.70180 * 9 8 7 11 11 C 1.46493 * 119.47281 * 180.02562 * 10 9 8 12 12 C 1.34652 * 121.05575 * 0.02562 * 10 9 8 13 13 O 1.21888 * 120.10240 * 179.97438 * 12 10 9 14 14 C 1.46497 * 119.99993 * 274.98085 * 3 2 1 15 15 H 1.09004 * 109.48881 * 349.45304 * 14 3 2 16 16 C 1.45462 * 118.06171 * 120.62719 * 13 12 10 17 17 C 1.47102 * 108.89307 * 223.55334 * 16 13 12 18 18 C 1.54863 * 110.32377 * 351.13848 * 17 16 13 19 19 N 1.44580 * 109.59936 * 288.73812 * 18 17 16 20 20 C 1.36941 * 118.63714 * 270.72061 * 19 18 17 21 21 H 1.08006 * 120.00076 * 34.85318 * 20 19 18 22 22 C 1.38806 * 120.00301 * 214.84355 * 20 19 18 23 23 N 1.31624 * 119.99676 * 5.16448 * 22 20 19 24 24 Si 1.86798 * 120.00601 * 185.16086 * 22 20 19 25 25 H 1.48499 * 109.46715 * 89.99876 * 24 22 20 26 26 H 1.48495 * 109.47527 * 210.00506 * 24 22 20 27 27 H 1.48501 * 109.46799 * 330.00669 * 24 22 20 28 28 C 1.47594 * 122.71740 * 90.70244 * 19 18 17 29 29 C 1.48998 * 109.58016 * 254.08423 * 13 12 10 30 30 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47255 * 300.00059 * 1 2 3 32 32 H 1.08993 * 109.47391 * 60.00188 * 1 2 3 33 33 H 1.08998 * 109.46748 * 239.99982 * 2 1 3 34 34 H 1.09001 * 109.47165 * 119.99814 * 2 1 3 35 35 H 1.08005 * 120.52548 * 0.02562 * 7 6 4 36 36 H 1.08002 * 119.93686 * 180.26609 * 8 7 6 37 37 H 1.08003 * 119.38380 * 179.72456 * 9 8 7 38 38 H 1.09002 * 109.47455 * 263.62080 * 11 10 9 39 39 H 1.09006 * 109.47155 * 23.61649 * 11 10 9 40 40 H 1.09000 * 109.47787 * 143.61985 * 11 10 9 41 41 H 1.06473 * 78.30506 * 92.33173 * 13 12 10 42 42 H 1.08995 * 140.50210 * 24.07722 * 16 13 12 43 43 H 1.09004 * 109.32634 * 111.40081 * 17 16 13 44 44 H 1.08998 * 109.32505 * 230.87366 * 17 16 13 45 45 H 1.08999 * 109.45038 * 48.77079 * 18 17 16 46 46 H 1.08990 * 109.44966 * 168.71742 * 18 17 16 47 47 H 0.96997 * 119.99842 * 179.97438 * 23 22 20 48 48 H 1.08997 * 108.95106 * 78.57488 * 28 19 18 49 49 H 1.09004 * 108.94862 * 197.29162 * 28 19 18 50 50 H 1.09010 * 135.74154 * 335.00172 * 29 13 12 51 51 H 1.06165 * 74.83539 * 286.21135 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3385 1.9828 1.1628 5 8 2.5729 1.3121 2.1502 6 6 2.4045 3.4503 1.2378 7 6 2.3983 4.0980 2.4714 8 6 2.4673 5.4907 2.5032 9 6 2.5279 6.1966 1.3451 10 7 2.5290 5.5738 0.1424 11 6 2.5961 6.3735 -1.0832 12 6 2.4695 4.2315 0.0552 13 8 2.4711 3.6891 -1.0364 14 6 2.1586 2.1085 -1.2639 15 1 2.0372 1.4164 -2.0972 16 6 3.5412 2.7491 -1.3319 17 6 4.0283 2.9958 -2.6978 18 6 3.1034 4.0028 -3.4250 19 7 1.8403 3.3686 -3.7295 20 6 1.7092 2.7050 -4.9202 21 1 2.5516 2.1735 -5.3377 22 6 0.4937 2.7154 -5.5904 23 7 -0.5026 3.4451 -5.1351 24 14 0.2719 1.6938 -7.1384 25 1 -0.2238 0.3425 -6.7729 26 1 -0.7112 2.3566 -8.0324 27 1 1.5745 1.5699 -7.8406 28 6 0.6864 3.4065 -2.8099 29 6 1.1037 3.1845 -1.3453 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3453 3.5305 3.3888 36 1 2.4679 6.0088 3.4508 37 1 2.5764 7.2748 1.3836 38 1 1.5900 6.5232 -1.4750 39 1 3.0473 7.3407 -0.8618 40 1 3.2009 5.8517 -1.8250 41 1 3.5090 3.6994 -0.7990 42 1 4.2507 2.0957 -0.8242 43 1 5.0389 3.4018 -2.6526 44 1 4.0440 2.0563 -3.2503 45 1 2.9304 4.8661 -2.7824 46 1 3.5780 4.3285 -4.3505 47 1 -1.3519 3.4526 -5.6037 48 1 0.1975 4.3769 -2.8952 49 1 -0.0205 2.6280 -3.0966 50 1 0.2331 2.8822 -0.7631 51 1 1.5030 4.1137 -0.9387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998174858.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:11 Heat of formation + Delta-G solvation = 505.645900 kcal Electronic energy + Delta-G solvation = -35414.427989 eV Core-core repulsion = 31337.507661 eV Total energy + Delta-G solvation = -4076.920328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -49.97469 -40.51355 -40.22555 -38.07986 -36.76507 -35.89297 -34.88196 -33.94849 -32.71940 -31.86386 -30.04954 -28.91836 -28.09096 -27.23185 -26.14384 -25.69012 -24.33322 -23.32784 -22.86363 -21.57557 -20.28707 -20.09574 -19.78248 -19.20226 -18.31381 -17.65966 -16.96552 -16.76287 -16.62010 -16.03478 -15.94919 -15.76776 -15.43010 -15.28946 -15.09586 -14.78765 -14.46695 -14.38573 -14.02900 -13.86003 -13.48973 -13.40140 -13.34763 -13.08660 -12.97720 -12.81920 -12.77045 -12.68005 -12.28032 -12.19981 -12.05450 -11.97811 -11.94896 -11.91229 -11.34462 -10.84911 -10.69650 -10.44267 -10.30512 -9.95760 -9.87464 -9.39467 -8.55023 -7.87230 -6.00865 -5.43625 0.21039 1.45596 1.49439 1.55355 1.74600 1.85601 1.93484 2.47826 2.49228 2.79555 3.02365 3.19271 3.29859 3.34040 3.71191 3.76464 3.99985 4.11536 4.13348 4.20479 4.22530 4.26803 4.30407 4.38540 4.42463 4.48082 4.53791 4.59224 4.63910 4.74194 4.78817 4.85427 4.90794 5.00521 5.04096 5.16633 5.17598 5.19816 5.26204 5.44976 5.56020 5.59819 5.68176 5.70830 5.71114 5.74757 5.96285 6.02407 6.43332 6.44465 6.91663 7.10265 7.19357 7.24959 7.89576 8.31083 9.16415 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.005067 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.722445 B = 5525.044424 C = 6670.856834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.108 3.892 3 N -0.622 5.622 4 C 0.563 3.437 5 O -0.591 6.591 6 C -0.190 4.190 7 C -0.007 4.007 8 C -0.356 4.356 9 C 0.221 3.779 10 N -0.503 5.503 11 C 0.046 3.954 12 C -0.326 4.326 13 O 0.006 5.994 14 C 0.221 3.779 15 H 0.052 0.948 16 C -0.203 4.203 17 C -0.145 4.145 18 C 0.129 3.871 19 N -0.595 5.595 20 C -0.266 4.266 21 H 0.063 0.937 22 C -0.031 4.031 23 N -0.929 5.929 24 Si 0.955 3.045 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.270 1.270 28 C 0.200 3.800 29 C -0.251 4.251 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.180 0.820 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.307 0.693 42 H 0.132 0.868 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.050 0.950 47 H 0.250 0.750 48 H 0.013 0.987 49 H 0.045 0.955 50 H 0.131 0.869 51 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 4.840 8.391 11.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.014 4.014 3 N -0.354 5.354 4 C 0.360 3.640 5 O -0.474 6.474 6 C -0.196 4.196 7 C -0.028 4.028 8 C -0.384 4.384 9 C 0.085 3.915 10 N -0.206 5.206 11 C -0.095 4.095 12 C -0.455 4.455 13 O 0.089 5.911 14 C 0.117 3.883 15 H 0.069 0.931 16 C -0.234 4.234 17 C -0.185 4.185 18 C 0.003 3.997 19 N -0.317 5.317 20 C -0.396 4.396 21 H 0.080 0.920 22 C -0.228 4.228 23 N -0.573 5.573 24 Si 0.784 3.216 25 H -0.216 1.216 26 H -0.224 1.224 27 H -0.195 1.195 28 C 0.074 3.926 29 C -0.284 4.284 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.197 0.803 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.305 0.695 42 H 0.149 0.851 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.031 0.969 49 H 0.063 0.937 50 H 0.148 0.852 51 H 0.319 0.681 Dipole moment (debyes) X Y Z Total from point charges 6.606 4.216 8.299 11.414 hybrid contribution -0.715 -0.939 -1.041 1.573 sum 5.891 3.278 7.259 9.906 Atomic orbital electron populations 1.22108 0.95319 1.03133 1.01309 1.21523 0.94776 0.81860 1.03220 1.48065 1.67000 1.14472 1.05857 1.18458 0.75130 0.88562 0.81865 1.90656 1.51988 1.67232 1.37545 1.18920 1.17338 0.89434 0.93938 1.21115 0.91600 0.95340 0.94747 1.19812 1.28038 0.92798 0.97794 1.22055 0.86598 0.98631 0.84190 1.42575 1.67979 1.04344 1.05668 1.22479 1.02822 0.97659 0.86570 1.12523 1.63810 0.82714 0.86438 1.93559 0.96720 1.60208 1.40577 1.22180 0.89915 0.91086 0.85137 0.93061 1.21747 0.94816 1.04291 1.02500 1.21674 1.00707 1.02390 0.93763 1.21383 0.86137 0.93765 0.98396 1.43643 1.09722 1.61541 1.16795 1.19352 0.97144 1.25367 0.97746 0.91974 1.25837 0.97686 0.99254 1.00023 1.70085 1.03455 1.42381 1.41412 0.85466 0.77495 0.78132 0.80476 1.21649 1.22394 1.19514 1.20737 0.88978 0.98979 0.83866 1.24391 0.94713 1.07161 1.02129 0.89553 0.93632 0.93162 0.89869 0.90245 0.88444 0.84875 0.80271 0.92691 0.86798 0.90366 0.69534 0.85140 0.88957 0.92250 0.91531 0.93151 0.94116 0.96894 0.93690 0.85216 0.68099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 10.24 71.98 0.74 -3.70 16 2 C 0.11 3.20 6.28 86.38 0.54 3.75 16 3 N -0.62 -20.28 2.26 ******* -2.58 -22.86 16 4 C 0.56 20.65 6.82 86.57 0.59 21.24 16 5 O -0.59 -24.93 16.07 -4.20 -0.07 -25.00 16 6 C -0.19 -6.44 5.58 -19.79 -0.11 -6.55 16 7 C -0.01 -0.22 9.69 22.83 0.22 0.00 16 8 C -0.36 -9.24 9.99 21.99 0.22 -9.02 16 9 C 0.22 4.74 10.25 83.56 0.86 5.60 16 10 N -0.50 -12.14 2.95 ******* -3.19 -15.33 16 11 C 0.05 0.89 9.61 127.77 1.23 2.12 16 12 C -0.33 -9.54 3.44 85.16 0.29 -9.25 16 13 O 0.01 0.16 0.22 -4.95 0.00 0.16 16 14 C 0.22 7.10 2.17 44.16 0.10 7.20 16 15 H 0.05 1.91 7.17 -2.38 -0.02 1.89 16 16 C -0.20 -5.69 3.59 28.60 0.10 -5.59 16 17 C -0.14 -4.00 5.74 29.40 0.17 -3.83 16 18 C 0.13 4.24 5.58 87.37 0.49 4.73 16 19 N -0.60 -24.76 2.25 -698.51 -1.57 -26.33 16 20 C -0.27 -12.79 9.36 84.03 0.79 -12.01 16 21 H 0.06 2.97 7.83 -2.91 -0.02 2.95 16 22 C -0.03 -1.58 5.09 84.86 0.43 -1.15 16 23 N -0.93 -49.77 11.00 21.65 0.24 -49.53 16 24 Si 0.96 41.70 29.56 68.60 2.03 43.72 16 25 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 C 0.20 8.31 4.61 86.47 0.40 8.71 16 29 C -0.25 -8.45 3.96 30.21 0.12 -8.33 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 2.25 7.96 -2.39 -0.02 2.23 16 34 H 0.08 2.44 7.18 -2.39 -0.02 2.42 16 35 H 0.10 3.31 7.78 -2.91 -0.02 3.29 16 36 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.18 2.17 7.95 -2.91 -0.02 2.14 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.34 7.89 -2.38 -0.02 1.32 16 40 H 0.08 1.59 4.57 -2.39 -0.01 1.58 16 41 H 0.31 8.47 2.61 8.78 0.02 8.50 16 42 H 0.13 3.63 7.93 -2.39 -0.02 3.61 16 43 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.07 1.92 3.16 -2.39 -0.01 1.91 16 46 H 0.05 1.71 7.99 -2.39 -0.02 1.69 16 47 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 48 H 0.01 0.60 7.95 -2.39 -0.02 0.58 16 49 H 0.04 2.18 6.66 -2.38 -0.02 2.17 16 50 H 0.13 4.58 7.99 -2.38 -0.02 4.56 16 51 H 0.32 10.05 1.95 1.77 0.00 10.05 16 Total: -1.00 -63.47 367.41 3.01 -60.46 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: 0.99 Total: 40.80 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 7.17 Total: -6.09 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -7.10 Total: -114.05 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.07 Total: -24.84 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -63.47 3.01 -60.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998174858.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 566.102 kcal (2) G-P(sol) polarization free energy of solvation -63.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 502.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 505.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds