Wall clock time and date at job start Wed Apr 1 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46582 * 2 1 4 4 C 1.34778 * 120.00070 * 273.75943 * 3 2 1 5 5 O 1.21551 * 120.00647 * 185.17202 * 4 3 2 6 6 C 1.47836 * 119.99590 * 5.18120 * 4 3 2 7 7 N 1.32858 * 119.78607 * 5.40697 * 6 4 3 8 8 C 1.31371 * 121.69681 * 179.71127 * 7 6 4 9 9 C 1.38766 * 121.06727 * 0.56891 * 8 7 6 10 10 C 1.38302 * 119.44381 * 359.72600 * 9 8 7 11 11 C 1.39344 * 118.43973 * 359.97438 * 10 9 8 12 12 O 1.35649 * 120.54116 * 179.97438 * 11 10 9 13 13 C 1.42903 * 117.00043 * 0.02562 * 12 11 10 14 14 C 1.46499 * 120.00253 * 93.76406 * 3 2 1 15 15 H 1.08999 * 108.31953 * 2.37848 * 14 3 2 16 16 C 1.52569 * 108.51267 * 244.76246 * 14 3 2 17 17 C 1.50881 * 109.35973 * 153.73406 * 16 14 3 18 18 C 1.53956 * 110.09510 * 91.88753 * 17 16 14 19 19 N 1.47607 * 112.14181 * 319.43374 * 18 17 16 20 20 C 1.36930 * 118.64415 * 137.86888 * 19 18 17 21 21 H 1.08002 * 120.00260 * 210.17033 * 20 19 18 22 22 C 1.38815 * 119.99926 * 30.16611 * 20 19 18 23 23 N 1.31616 * 119.99920 * 10.69225 * 22 20 19 24 24 Si 1.86802 * 120.00035 * 190.68714 * 22 20 19 25 25 H 1.48496 * 109.47074 * 90.00498 * 24 22 20 26 26 H 1.48507 * 109.46884 * 210.00237 * 24 22 20 27 27 H 1.48499 * 109.47002 * 329.99868 * 24 22 20 28 28 C 1.44576 * 122.71286 * 317.87575 * 19 18 17 29 29 C 1.47095 * 108.51533 * 119.99817 * 14 3 2 30 30 H 1.09003 * 109.46994 * 60.00867 * 1 2 3 31 31 H 1.09006 * 109.46429 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47826 * 300.00074 * 1 2 3 33 33 H 1.08994 * 109.47444 * 239.99623 * 2 1 3 34 34 H 1.09003 * 109.46994 * 119.99133 * 2 1 3 35 35 H 1.07998 * 119.46725 * 180.31389 * 8 7 6 36 36 H 1.08002 * 120.28231 * 179.73984 * 9 8 7 37 37 H 1.08003 * 120.77881 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47572 * 180.02562 * 13 12 11 39 39 H 1.08997 * 109.47349 * 300.00747 * 13 12 11 40 40 H 1.09007 * 109.47026 * 60.00195 * 13 12 11 41 41 H 1.09003 * 109.49119 * 273.69663 * 16 14 3 42 42 H 1.08993 * 109.49339 * 33.74552 * 16 14 3 43 43 H 1.09004 * 109.36716 * 212.07507 * 17 16 14 44 44 H 1.09002 * 109.36773 * 331.69500 * 17 16 14 45 45 H 1.08999 * 108.94898 * 80.11868 * 18 17 16 46 46 H 1.08997 * 108.94675 * 198.75309 * 18 17 16 47 47 H 0.97004 * 120.00545 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.44945 * 330.68167 * 28 19 18 49 49 H 1.08996 * 109.45143 * 210.76511 * 28 19 18 50 50 H 1.09002 * 109.32850 * 63.78909 * 29 14 3 51 51 H 1.08997 * 109.32708 * 304.31851 * 29 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1707 2.0421 -1.1647 5 8 2.6636 3.1532 -1.1732 6 6 1.7380 1.4158 -2.4320 7 7 1.1024 0.2493 -2.4084 8 6 0.6965 -0.3380 -3.5112 9 6 0.9270 0.2346 -4.7540 10 6 1.5900 1.4458 -4.8321 11 6 2.0054 2.0525 -3.6485 12 8 2.6596 3.2405 -3.6755 13 6 2.8936 3.8232 -4.9591 14 6 2.3409 2.0442 1.2659 15 1 2.1904 1.3295 2.0750 16 6 1.3753 3.2089 1.4627 17 6 1.2262 3.4914 2.9373 18 6 2.2495 4.5537 3.3784 19 7 3.5688 4.3509 2.7482 20 6 4.2488 5.4443 2.2823 21 1 4.9134 5.3469 1.4366 22 6 4.0837 6.6780 2.8968 23 7 3.4465 6.7611 4.0454 24 14 4.7660 8.2204 2.0936 25 1 3.7381 8.8078 1.1973 26 1 5.1290 9.2060 3.1434 27 1 5.9734 7.8733 1.3017 28 6 4.1727 3.0454 2.6025 29 6 3.7599 2.4309 1.2423 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3635 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 0.1786 -1.2837 -3.4498 36 1 0.5914 -0.2614 -5.6528 37 1 1.7812 1.9106 -5.7881 38 1 3.4240 4.7678 -4.8382 39 1 3.4954 3.1436 -5.5625 40 1 1.9401 4.0026 -5.4560 41 1 1.7660 4.0940 0.9606 42 1 0.4037 2.9510 1.0415 43 1 0.2184 3.8563 3.1354 44 1 1.3933 2.5730 3.5000 45 1 1.8751 5.5405 3.1060 46 1 2.3638 4.5069 4.4614 47 1 3.3314 7.6231 4.4751 48 1 3.8350 2.3970 3.4111 49 1 5.2577 3.1407 2.6434 50 1 3.9210 3.1636 0.4516 51 1 4.3706 1.5501 1.0442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998178329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:34 Heat of formation + Delta-G solvation = 21.731124 kcal Electronic energy + Delta-G solvation = -32877.308983 eV Core-core repulsion = 28779.404535 eV Total energy + Delta-G solvation = -4097.904448 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.19039 -39.59753 -38.35586 -37.08007 -35.47881 -33.38898 -32.26415 -31.50150 -30.98341 -30.63453 -29.07004 -27.63991 -25.95999 -24.97161 -23.69572 -23.20589 -23.07555 -22.76060 -20.54692 -19.31396 -19.03310 -18.20618 -17.31906 -16.94473 -16.42409 -16.10449 -15.58758 -15.51287 -14.88460 -14.70975 -14.62630 -14.19894 -13.97139 -13.78857 -13.71115 -13.31542 -13.19266 -13.17391 -12.72238 -12.65950 -12.32765 -12.17850 -11.85178 -11.73912 -11.68372 -11.64196 -11.09004 -11.00764 -10.88167 -10.70900 -10.49876 -10.33362 -10.15500 -9.99908 -9.91877 -9.75079 -9.56845 -9.46398 -9.35239 -8.97761 -8.64660 -8.24622 -8.11679 -6.40908 -5.59473 -3.06236 0.52665 0.98354 2.93797 2.97651 3.28528 3.50397 3.55856 3.58753 3.81312 4.09648 4.31356 4.43480 4.66324 4.67289 4.85938 4.92346 4.93711 5.10609 5.28251 5.33610 5.44482 5.54415 5.57354 5.63911 5.68368 5.69654 5.73133 5.84330 5.89407 5.99866 6.08350 6.20078 6.24503 6.26951 6.40996 6.53281 6.56876 6.65092 6.74871 6.84347 6.98368 7.01103 7.05222 7.10694 7.25348 7.43444 7.56289 7.63975 7.89309 7.90355 8.02574 8.63812 8.69394 9.44514 10.10222 10.56440 11.47754 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.003762 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.830364 B = 7441.878478 C = 9070.589072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.112 3.888 3 N -0.599 5.599 4 C 0.562 3.438 5 O -0.493 6.493 6 C 0.047 3.953 7 N -0.406 5.406 8 C 0.044 3.956 9 C -0.111 4.111 10 C -0.180 4.180 11 C 0.137 3.863 12 O -0.268 6.268 13 C 0.019 3.981 14 C 0.175 3.825 15 H 0.066 0.934 16 C -0.111 4.111 17 C -0.140 4.140 18 C 0.181 3.819 19 N -0.587 5.587 20 C -0.246 4.246 21 H 0.063 0.937 22 C 0.004 3.996 23 N -0.909 5.909 24 Si 0.900 3.100 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.280 1.280 28 C 0.166 3.834 29 C -0.169 4.169 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.023 0.977 47 H 0.251 0.749 48 H 0.028 0.972 49 H 0.047 0.953 50 H 0.093 0.907 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 -16.887 -17.909 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 N -0.333 5.333 4 C 0.347 3.653 5 O -0.366 6.366 6 C -0.092 4.092 7 N -0.119 5.119 8 C -0.116 4.116 9 C -0.131 4.131 10 C -0.206 4.206 11 C 0.086 3.914 12 O -0.177 6.177 13 C -0.076 4.076 14 C 0.074 3.926 15 H 0.084 0.916 16 C -0.149 4.149 17 C -0.180 4.180 18 C 0.056 3.944 19 N -0.308 5.308 20 C -0.376 4.376 21 H 0.080 0.920 22 C -0.194 4.194 23 N -0.555 5.555 24 Si 0.731 3.269 25 H -0.216 1.216 26 H -0.220 1.220 27 H -0.205 1.205 28 C 0.037 3.963 29 C -0.210 4.210 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.179 0.821 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.090 0.910 46 H 0.041 0.959 47 H 0.061 0.939 48 H 0.047 0.953 49 H 0.065 0.935 50 H 0.111 0.889 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.075 -16.351 -16.780 24.474 hybrid contribution 0.191 0.989 -1.706 1.981 sum -6.884 -15.362 -18.486 25.002 Atomic orbital electron populations 1.22073 0.96256 1.01106 1.01602 1.21785 0.94640 0.82313 1.02376 1.48319 1.64719 1.14145 1.06091 1.17614 0.79834 0.85395 0.82407 1.90885 1.41860 1.18405 1.85476 1.21017 1.02552 0.93038 0.92609 1.68312 1.06665 1.06547 1.30350 1.22799 1.00309 1.00834 0.87650 1.22149 0.96488 0.94740 0.99743 1.21739 1.03209 0.97947 0.97718 1.20108 0.91010 0.86507 0.93739 1.86489 1.69638 1.30910 1.30665 1.23224 1.01102 0.99335 0.83930 1.20083 0.96003 0.93925 0.82549 0.91571 1.21289 0.96717 0.99543 0.97396 1.22015 1.00171 1.00514 0.95279 1.20985 0.82830 0.95831 0.94780 1.43581 1.16066 1.01498 1.69688 1.19217 1.22203 0.87492 1.08686 0.91952 1.25090 1.00205 0.98619 0.95498 1.70035 1.46293 1.23465 1.15671 0.86310 0.78860 0.83442 0.78297 1.21592 1.21953 1.20496 1.20553 0.96303 0.87316 0.92130 1.22037 0.94008 1.00989 1.03968 0.92019 0.92631 0.93512 0.88589 0.91994 0.82057 0.84333 0.83873 0.87459 0.92664 0.92611 0.89473 0.94005 0.93015 0.93872 0.91030 0.95857 0.93940 0.95335 0.93507 0.88890 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.54 37.16 0.35 -1.42 16 2 C 0.11 1.43 5.65 -4.04 -0.02 1.41 16 3 N -0.60 -9.89 2.26 -170.74 -0.39 -10.27 16 4 C 0.56 10.20 7.02 -12.33 -0.09 10.12 16 5 O -0.49 -10.86 12.07 -16.56 -0.20 -11.06 16 6 C 0.05 0.69 6.54 -82.88 -0.54 0.15 16 7 N -0.41 -4.80 4.01 -9.71 -0.04 -4.84 16 8 C 0.04 0.37 11.17 -17.55 -0.20 0.17 16 9 C -0.11 -0.82 10.10 -39.36 -0.40 -1.21 16 10 C -0.18 -1.64 9.13 -39.15 -0.36 -2.00 16 11 C 0.14 1.83 6.71 -38.56 -0.26 1.58 16 12 O -0.27 -3.96 8.58 -40.52 -0.35 -4.31 16 13 C 0.02 0.18 9.83 101.05 0.99 1.17 16 14 C 0.18 3.22 1.95 -70.99 -0.14 3.09 16 15 H 0.07 1.13 6.87 -51.93 -0.36 0.77 16 16 C -0.11 -2.25 4.37 -28.02 -0.12 -2.37 16 17 C -0.14 -2.84 5.71 -27.30 -0.16 -3.00 16 18 C 0.18 4.54 4.64 -2.94 -0.01 4.53 16 19 N -0.59 -15.37 2.26 -172.09 -0.39 -15.76 16 20 C -0.25 -7.12 9.42 -15.06 -0.14 -7.26 16 21 H 0.06 1.83 7.85 -52.49 -0.41 1.42 16 22 C 0.00 0.10 4.97 -17.43 -0.09 0.02 16 23 N -0.91 -27.35 10.96 55.49 0.61 -26.74 16 24 Si 0.90 23.05 29.57 -169.99 -5.03 18.03 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.17 3.72 5.65 -4.09 -0.02 3.69 16 29 C -0.17 -3.45 4.83 -28.59 -0.14 -3.59 16 30 H 0.06 0.79 6.36 -51.93 -0.33 0.46 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.18 5.58 -51.93 -0.29 0.89 16 34 H 0.06 0.73 7.79 -51.93 -0.40 0.32 16 35 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.14 0.91 6.46 -52.48 -0.34 0.57 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.39 7.70 -51.93 -0.40 -0.01 16 40 H 0.06 0.40 7.70 -51.93 -0.40 0.00 16 41 H 0.09 2.14 6.87 -51.93 -0.36 1.78 16 42 H 0.04 0.80 8.04 -51.93 -0.42 0.38 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.04 0.80 7.32 -51.93 -0.38 0.42 16 45 H 0.07 2.02 6.46 -51.93 -0.34 1.68 16 46 H 0.02 0.63 7.99 -51.93 -0.42 0.21 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.03 0.59 8.07 -51.93 -0.42 0.18 16 49 H 0.05 1.07 7.99 -51.93 -0.41 0.65 16 50 H 0.09 2.23 5.89 -51.93 -0.31 1.93 16 51 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -34.59 388.33 -9.33 -43.92 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.07 Total: 0.09 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.33 Total: 5.08 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.21 Total: -57.60 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.55 Total: -15.37 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.03 Total: 18.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.59 -9.33 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998178329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.653 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds