Wall clock time and date at job start Wed Apr 1 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46582 * 2 1 4 4 C 1.34778 * 120.00070 * 273.75943 * 3 2 1 5 5 O 1.21551 * 120.00647 * 185.17202 * 4 3 2 6 6 C 1.47836 * 119.99590 * 5.18120 * 4 3 2 7 7 N 1.32858 * 119.78607 * 5.40697 * 6 4 3 8 8 C 1.31371 * 121.69681 * 179.71127 * 7 6 4 9 9 C 1.38766 * 121.06727 * 0.56891 * 8 7 6 10 10 C 1.38302 * 119.44381 * 359.72600 * 9 8 7 11 11 C 1.39344 * 118.43973 * 359.97438 * 10 9 8 12 12 O 1.35649 * 120.54116 * 179.97438 * 11 10 9 13 13 C 1.42903 * 117.00043 * 0.02562 * 12 11 10 14 14 C 1.46499 * 120.00253 * 93.76406 * 3 2 1 15 15 H 1.08999 * 108.31953 * 2.37848 * 14 3 2 16 16 C 1.52569 * 108.51267 * 244.76246 * 14 3 2 17 17 C 1.50881 * 109.35973 * 153.73406 * 16 14 3 18 18 C 1.53956 * 110.09510 * 91.88753 * 17 16 14 19 19 N 1.47607 * 112.14181 * 319.43374 * 18 17 16 20 20 C 1.36930 * 118.64415 * 137.86888 * 19 18 17 21 21 H 1.08002 * 120.00260 * 210.17033 * 20 19 18 22 22 C 1.38815 * 119.99926 * 30.16611 * 20 19 18 23 23 N 1.31616 * 119.99920 * 10.69225 * 22 20 19 24 24 Si 1.86802 * 120.00035 * 190.68714 * 22 20 19 25 25 H 1.48496 * 109.47074 * 90.00498 * 24 22 20 26 26 H 1.48507 * 109.46884 * 210.00237 * 24 22 20 27 27 H 1.48499 * 109.47002 * 329.99868 * 24 22 20 28 28 C 1.44576 * 122.71286 * 317.87575 * 19 18 17 29 29 C 1.47095 * 108.51533 * 119.99817 * 14 3 2 30 30 H 1.09003 * 109.46994 * 60.00867 * 1 2 3 31 31 H 1.09006 * 109.46429 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47826 * 300.00074 * 1 2 3 33 33 H 1.08994 * 109.47444 * 239.99623 * 2 1 3 34 34 H 1.09003 * 109.46994 * 119.99133 * 2 1 3 35 35 H 1.07998 * 119.46725 * 180.31389 * 8 7 6 36 36 H 1.08002 * 120.28231 * 179.73984 * 9 8 7 37 37 H 1.08003 * 120.77881 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47572 * 180.02562 * 13 12 11 39 39 H 1.08997 * 109.47349 * 300.00747 * 13 12 11 40 40 H 1.09007 * 109.47026 * 60.00195 * 13 12 11 41 41 H 1.09003 * 109.49119 * 273.69663 * 16 14 3 42 42 H 1.08993 * 109.49339 * 33.74552 * 16 14 3 43 43 H 1.09004 * 109.36716 * 212.07507 * 17 16 14 44 44 H 1.09002 * 109.36773 * 331.69500 * 17 16 14 45 45 H 1.08999 * 108.94898 * 80.11868 * 18 17 16 46 46 H 1.08997 * 108.94675 * 198.75309 * 18 17 16 47 47 H 0.97004 * 120.00545 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.44945 * 330.68167 * 28 19 18 49 49 H 1.08996 * 109.45143 * 210.76511 * 28 19 18 50 50 H 1.09002 * 109.32850 * 63.78909 * 29 14 3 51 51 H 1.08997 * 109.32708 * 304.31851 * 29 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1707 2.0421 -1.1647 5 8 2.6636 3.1532 -1.1732 6 6 1.7380 1.4158 -2.4320 7 7 1.1024 0.2493 -2.4084 8 6 0.6965 -0.3380 -3.5112 9 6 0.9270 0.2346 -4.7540 10 6 1.5900 1.4458 -4.8321 11 6 2.0054 2.0525 -3.6485 12 8 2.6596 3.2405 -3.6755 13 6 2.8936 3.8232 -4.9591 14 6 2.3409 2.0442 1.2659 15 1 2.1904 1.3295 2.0750 16 6 1.3753 3.2089 1.4627 17 6 1.2262 3.4914 2.9373 18 6 2.2495 4.5537 3.3784 19 7 3.5688 4.3509 2.7482 20 6 4.2488 5.4443 2.2823 21 1 4.9134 5.3469 1.4366 22 6 4.0837 6.6780 2.8968 23 7 3.4465 6.7611 4.0454 24 14 4.7660 8.2204 2.0936 25 1 3.7381 8.8078 1.1973 26 1 5.1290 9.2060 3.1434 27 1 5.9734 7.8733 1.3017 28 6 4.1727 3.0454 2.6025 29 6 3.7599 2.4309 1.2423 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3635 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 0.1786 -1.2837 -3.4498 36 1 0.5914 -0.2614 -5.6528 37 1 1.7812 1.9106 -5.7881 38 1 3.4240 4.7678 -4.8382 39 1 3.4954 3.1436 -5.5625 40 1 1.9401 4.0026 -5.4560 41 1 1.7660 4.0940 0.9606 42 1 0.4037 2.9510 1.0415 43 1 0.2184 3.8563 3.1354 44 1 1.3933 2.5730 3.5000 45 1 1.8751 5.5405 3.1060 46 1 2.3638 4.5069 4.4614 47 1 3.3314 7.6231 4.4751 48 1 3.8350 2.3970 3.4111 49 1 5.2577 3.1407 2.6434 50 1 3.9210 3.1636 0.4516 51 1 4.3706 1.5501 1.0442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998178329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:33 Heat of formation + Delta-G solvation = 1.618701 kcal Electronic energy + Delta-G solvation = -32878.181123 eV Core-core repulsion = 28779.404535 eV Total energy + Delta-G solvation = -4098.776588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.14242 -40.84598 -39.24305 -38.73678 -36.90189 -35.02057 -33.41488 -33.23696 -32.33455 -31.78922 -30.38842 -28.39607 -27.85988 -26.28441 -25.40118 -24.75174 -23.99534 -23.75275 -21.97370 -20.99771 -20.54690 -19.03900 -18.65896 -18.10525 -17.97447 -17.06422 -16.97532 -16.84496 -16.38166 -15.94822 -15.67499 -15.44965 -15.36926 -15.27874 -15.05830 -14.87247 -14.45480 -14.26335 -14.10098 -13.92455 -13.68168 -13.47105 -13.34632 -13.07761 -12.93553 -12.78221 -12.61387 -12.50285 -12.43428 -12.33859 -12.08775 -12.01385 -11.85367 -11.73918 -11.52183 -11.37106 -11.30467 -10.68342 -10.67061 -10.46832 -10.15522 -9.62703 -9.34193 -8.55876 -7.83422 -5.32974 -0.29428 0.26256 1.40377 1.43139 1.51844 1.89436 2.06325 2.25128 2.50870 2.86965 3.19105 3.29982 3.59331 3.69909 3.76428 3.86337 4.04675 4.13737 4.18699 4.23583 4.27718 4.30498 4.40394 4.47263 4.50675 4.52617 4.65467 4.66038 4.66636 4.79572 4.83980 4.92027 4.94297 5.03428 5.05468 5.10924 5.14433 5.16671 5.25157 5.34063 5.43383 5.45326 5.59131 5.62297 5.66199 5.71427 5.80929 5.93642 6.25155 6.45534 6.58766 6.81943 7.22092 7.37669 7.99056 8.36689 9.20652 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.003762 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.830364 B = 7441.878478 C = 9070.589072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.109 3.891 3 N -0.599 5.599 4 C 0.552 3.448 5 O -0.551 6.551 6 C 0.005 3.995 7 N -0.414 5.414 8 C 0.047 3.953 9 C -0.088 4.088 10 C -0.176 4.176 11 C 0.115 3.885 12 O -0.315 6.315 13 C 0.012 3.988 14 C 0.177 3.823 15 H 0.093 0.907 16 C -0.096 4.096 17 C -0.126 4.126 18 C 0.191 3.809 19 N -0.600 5.600 20 C -0.257 4.257 21 H 0.047 0.953 22 C -0.044 4.044 23 N -0.933 5.933 24 Si 0.959 3.041 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.163 3.837 29 C -0.151 4.151 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.202 0.798 36 H 0.186 0.814 37 H 0.172 0.828 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.002 0.998 47 H 0.249 0.751 48 H 0.052 0.948 49 H 0.036 0.964 50 H 0.051 0.949 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 -20.508 -20.243 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.012 4.012 3 N -0.331 5.331 4 C 0.340 3.660 5 O -0.428 6.428 6 C -0.131 4.131 7 N -0.126 5.126 8 C -0.115 4.115 9 C -0.108 4.108 10 C -0.202 4.202 11 C 0.065 3.935 12 O -0.226 6.226 13 C -0.082 4.082 14 C 0.075 3.925 15 H 0.111 0.889 16 C -0.135 4.135 17 C -0.166 4.166 18 C 0.067 3.933 19 N -0.322 5.322 20 C -0.388 4.388 21 H 0.065 0.935 22 C -0.240 4.240 23 N -0.579 5.579 24 Si 0.788 3.212 25 H -0.218 1.218 26 H -0.212 1.212 27 H -0.199 1.199 28 C 0.035 3.965 29 C -0.191 4.191 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.219 0.781 36 H 0.204 0.796 37 H 0.190 0.810 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.020 0.980 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.070 0.930 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.671 -20.020 -19.114 29.006 hybrid contribution 0.638 1.986 -1.145 2.379 sum -8.033 -18.034 -20.259 28.287 Atomic orbital electron populations 1.21986 0.95127 1.02569 1.00407 1.22040 0.95493 0.80134 1.03553 1.48353 1.64435 1.15394 1.04915 1.18270 0.78842 0.84913 0.83959 1.90850 1.44476 1.20919 1.86560 1.20528 1.06051 0.95104 0.91425 1.68196 1.06712 1.05531 1.32186 1.23584 0.98991 1.01630 0.87247 1.22712 0.93607 0.93334 1.01114 1.22125 1.02380 0.98425 0.97242 1.20401 0.91779 0.86477 0.94894 1.86423 1.70413 1.32153 1.33584 1.23449 1.02567 0.99504 0.82694 1.19878 0.94017 0.93934 0.84676 0.88902 1.21086 0.97455 0.98310 0.96640 1.21862 0.99265 0.99983 0.95454 1.20743 0.83569 0.95665 0.93369 1.43749 1.16647 1.02200 1.69643 1.19340 1.22164 0.89046 1.08250 0.93502 1.25741 1.00973 1.01104 0.96148 1.70173 1.47319 1.23783 1.16662 0.85387 0.78237 0.80095 0.77478 1.21789 1.21193 1.19863 1.20690 0.95649 0.86168 0.93955 1.21766 0.96062 1.00299 1.01013 0.93258 0.89712 0.94637 0.87770 0.90428 0.78125 0.79640 0.81033 0.87996 0.90367 0.90626 0.94636 0.92908 0.91376 0.91066 0.95060 0.97973 0.94213 0.92967 0.94588 0.92991 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.54 71.98 0.69 -2.26 16 2 C 0.11 2.56 5.65 86.38 0.49 3.05 16 3 N -0.60 -19.70 2.26 -812.38 -1.84 -21.53 16 4 C 0.55 20.94 7.02 86.78 0.61 21.55 16 5 O -0.55 -26.35 12.07 17.04 0.21 -26.14 16 6 C 0.00 0.14 6.54 41.93 0.27 0.41 16 7 N -0.41 -8.86 4.01 -184.63 -0.74 -9.60 16 8 C 0.05 0.59 11.17 84.89 0.95 1.54 16 9 C -0.09 -0.85 10.10 22.41 0.23 -0.62 16 10 C -0.18 -2.67 9.13 22.55 0.21 -2.47 16 11 C 0.12 3.06 6.71 22.93 0.15 3.21 16 12 O -0.31 -9.84 8.58 -68.72 -0.59 -10.43 16 13 C 0.01 0.22 9.83 113.37 1.11 1.34 16 14 C 0.18 6.50 1.95 43.01 0.08 6.58 16 15 H 0.09 2.93 6.87 -2.39 -0.02 2.91 16 16 C -0.10 -3.99 4.37 29.76 0.13 -3.86 16 17 C -0.13 -5.12 5.71 30.23 0.17 -4.94 16 18 C 0.19 10.01 4.64 86.49 0.40 10.42 16 19 N -0.60 -32.87 2.26 -698.38 -1.58 -34.45 16 20 C -0.26 -15.70 9.42 84.04 0.79 -14.91 16 21 H 0.05 2.95 7.85 -2.91 -0.02 2.93 16 22 C -0.04 -2.70 4.97 84.86 0.42 -2.28 16 23 N -0.93 -58.37 10.96 21.65 0.24 -58.13 16 24 Si 0.96 49.36 29.57 68.60 2.03 51.39 16 25 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 27 H -0.27 -13.68 7.11 99.48 0.71 -12.97 16 28 C 0.16 7.48 5.65 87.37 0.49 7.97 16 29 C -0.15 -6.32 4.83 29.39 0.14 -6.18 16 30 H 0.05 1.16 6.36 -2.39 -0.02 1.14 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 2.32 5.58 -2.39 -0.01 2.30 16 34 H 0.08 1.57 7.79 -2.39 -0.02 1.55 16 35 H 0.20 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 37 H 0.17 1.51 6.46 -2.91 -0.02 1.49 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 1.01 7.70 -2.39 -0.02 0.99 16 40 H 0.08 1.03 7.70 -2.38 -0.02 1.01 16 41 H 0.03 1.85 6.87 -2.39 -0.02 1.83 16 42 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16 43 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 44 H 0.07 2.51 7.32 -2.39 -0.02 2.49 16 45 H 0.03 1.85 6.46 -2.39 -0.02 1.84 16 46 H 0.00 0.12 7.99 -2.39 -0.02 0.10 16 47 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 48 H 0.05 2.14 8.07 -2.39 -0.02 2.12 16 49 H 0.04 1.69 7.99 -2.39 -0.02 1.68 16 50 H 0.05 2.67 5.89 -2.39 -0.01 2.65 16 51 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -84.28 388.33 6.00 -78.28 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.92 Total: 12.07 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 7.35 Total: 18.54 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -3.92 Total: -123.71 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.38 Total: -36.57 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.39 kcal Total: -84.28 6.00 -78.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998178329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.903 kcal (2) G-P(sol) polarization free energy of solvation -84.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds