Wall clock time and date at job start Wed Apr 1 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47631 * 2 1 4 4 C 1.34778 * 119.99981 * 86.75722 * 3 2 1 5 5 O 1.21685 * 120.00150 * 174.65196 * 4 3 2 6 6 C 1.46719 * 119.99880 * 354.92807 * 4 3 2 7 7 O 1.35342 * 126.64474 * 353.91949 * 6 4 3 8 8 C 1.33666 * 107.68587 * 180.02562 * 7 6 4 9 9 C 1.50706 * 125.42138 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47251 * 270.00027 * 9 8 7 11 11 C 1.52998 * 117.49561 * 243.62277 * 10 9 8 12 12 C 1.53001 * 117.49600 * 175.00184 * 10 9 8 13 13 N 1.30615 * 109.15477 * 0.02562 * 8 7 6 14 14 C 1.33699 * 108.99509 * 359.72698 * 13 8 7 15 15 C 1.50694 * 126.27399 * 180.27457 * 14 13 8 16 16 C 1.46499 * 120.00268 * 266.75680 * 3 2 1 17 17 H 1.08997 * 110.63984 * 1.68596 * 16 3 2 18 18 C 1.55155 * 110.72030 * 125.02448 * 16 3 2 19 19 C 1.54908 * 101.58351 * 153.86740 * 18 16 3 20 20 N 1.47423 * 104.82972 * 322.99099 * 19 18 16 21 21 C 1.36935 * 125.64458 * 204.16683 * 20 19 18 22 22 H 1.08003 * 120.00133 * 179.97438 * 21 20 19 23 23 C 1.38815 * 120.00270 * 359.95328 * 21 20 19 24 24 N 1.31621 * 119.99861 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99991 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47256 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47020 * 120.00203 * 25 23 21 28 28 H 1.48505 * 109.47227 * 240.00045 * 25 23 21 29 29 C 1.47019 * 108.70499 * 24.12444 * 20 19 18 30 30 H 1.09009 * 109.46778 * 299.99849 * 1 2 3 31 31 H 1.08997 * 109.47261 * 59.99428 * 1 2 3 32 32 H 1.08998 * 109.47746 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46973 * 239.99826 * 2 1 3 34 34 H 1.09005 * 109.47156 * 120.00345 * 2 1 3 35 35 H 1.08999 * 109.46770 * 30.00436 * 9 8 7 36 36 H 1.09001 * 109.46819 * 149.99792 * 9 8 7 37 37 H 1.08993 * 115.54882 * 29.32845 * 10 9 8 38 38 H 1.09003 * 117.50413 * 0.02562 * 11 10 9 39 39 H 1.09004 * 117.49440 * 145.02238 * 11 10 9 40 40 H 1.08994 * 117.49665 * 214.97683 * 12 10 9 41 41 H 1.08999 * 117.49776 * 0.02562 * 12 10 9 42 42 H 1.08997 * 109.47135 * 270.19315 * 15 14 13 43 43 H 1.08999 * 109.47216 * 30.19109 * 15 14 13 44 44 H 1.09003 * 109.47292 * 150.18992 * 15 14 13 45 45 H 1.09006 * 111.00364 * 271.93695 * 18 16 3 46 46 H 1.08999 * 111.00569 * 35.78730 * 18 16 3 47 47 H 1.08994 * 110.36751 * 204.15010 * 19 18 16 48 48 H 1.09008 * 110.45797 * 81.87326 * 19 18 16 49 49 H 0.96996 * 119.99634 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.88406 * 239.52124 * 29 20 19 51 51 H 1.09006 * 109.87829 * 118.35936 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1808 2.0384 1.1653 5 8 2.6776 3.1493 1.1732 6 6 1.7643 1.4122 2.4251 7 8 1.1031 0.2395 2.5643 8 6 0.9164 0.0312 3.8714 9 6 0.2198 -1.1610 4.4751 10 6 -1.2748 -0.8635 4.6114 11 6 -1.8608 -0.8219 6.0241 12 6 -2.1793 -1.9975 5.0981 13 7 1.4338 1.0255 4.5419 14 6 1.9723 1.8966 3.6825 15 6 2.6771 3.1803 4.0381 16 6 2.3303 2.0478 -1.2667 17 1 2.1167 1.3906 -2.1095 18 6 1.5469 3.3811 -1.3927 19 6 2.4647 4.1928 -2.3406 20 7 3.8362 3.8271 -1.9423 21 6 4.9556 4.5899 -2.1429 22 1 5.9195 4.2319 -1.8124 23 6 4.8516 5.8232 -2.7715 24 7 3.6770 6.2597 -3.1742 25 14 6.3788 6.8634 -3.0459 26 1 7.5655 6.1525 -2.5058 27 1 6.5628 7.0984 -4.5006 28 1 6.2222 8.1659 -2.3499 29 6 3.8029 2.5085 -1.2930 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.3604 -2.0287 3.8306 36 1 0.6404 -1.3676 5.4593 37 1 -1.6856 -0.1727 3.8752 38 1 -1.1815 -1.0060 6.8565 39 1 -2.6574 -0.1034 6.2175 40 1 -3.1853 -2.0524 4.6823 41 1 -1.7095 -2.9553 5.3216 42 1 1.9524 3.9935 4.0783 43 1 3.1576 3.0735 5.0106 44 1 3.4309 3.4023 3.2827 45 1 0.5675 3.2177 -1.8425 46 1 1.4532 3.8723 -0.4242 47 1 2.3019 5.2616 -2.2029 48 1 2.2837 3.9127 -3.3784 49 1 3.6043 7.1216 -3.6131 50 1 4.1853 2.5866 -0.2753 51 1 4.4030 1.7993 -1.8633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033836519.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:30 Heat of formation + Delta-G solvation = 28.954403 kcal Electronic energy + Delta-G solvation = -31857.871493 eV Core-core repulsion = 27760.280270 eV Total energy + Delta-G solvation = -4097.591223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.57728 -41.33669 -38.61876 -38.42773 -37.22118 -36.08627 -34.38913 -33.37252 -31.69594 -30.82309 -30.29253 -29.43241 -27.97503 -26.40108 -24.69037 -23.48110 -23.18211 -23.14317 -22.12331 -22.08097 -21.45926 -20.53542 -18.97608 -18.52170 -17.95929 -17.47361 -17.21277 -16.72229 -16.52473 -16.06591 -15.95509 -15.54265 -15.17238 -14.98509 -14.95337 -14.58677 -14.46454 -14.33300 -13.97835 -13.90835 -13.84789 -13.47687 -13.35081 -13.21595 -13.01944 -12.83180 -12.76173 -12.74142 -12.40904 -12.30436 -12.27289 -12.17584 -11.99366 -11.95352 -11.83972 -11.74952 -11.42805 -11.28507 -10.90455 -10.84345 -10.74857 -10.03273 -9.65131 -8.85477 -7.76436 -5.19710 -0.28754 1.21260 1.29824 1.44064 1.46486 1.56433 1.88324 1.97072 2.50227 2.73443 2.93179 3.32225 3.41956 3.60092 3.73221 3.77434 3.85454 3.89746 3.99244 4.05873 4.09371 4.16408 4.22314 4.33736 4.35466 4.46103 4.51616 4.59203 4.60169 4.64827 4.68859 4.70790 4.80982 4.83568 4.87156 4.89658 4.96280 4.98960 5.00173 5.07993 5.09790 5.23928 5.27503 5.32190 5.37406 5.43921 5.59848 5.67869 5.79867 6.20665 6.31527 6.51642 6.96141 7.11594 7.78864 8.42653 9.25789 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020744 B = 0.002593 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.492880 B =10794.640603 C =11544.539680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 N -0.591 5.591 4 C 0.594 3.406 5 O -0.528 6.528 6 C -0.126 4.126 7 O -0.170 6.170 8 C 0.229 3.771 9 C 0.009 3.991 10 C -0.168 4.168 11 C -0.183 4.183 12 C -0.153 4.153 13 N -0.505 5.505 14 C 0.069 3.931 15 C -0.076 4.076 16 C 0.154 3.846 17 H 0.127 0.873 18 C -0.139 4.139 19 C 0.162 3.838 20 N -0.617 5.617 21 C -0.232 4.232 22 H 0.074 0.926 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.981 3.019 26 H -0.269 1.269 27 H -0.287 1.287 28 H -0.292 1.292 29 C 0.129 3.871 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.067 0.933 48 H -0.001 1.001 49 H 0.247 0.753 50 H 0.020 0.980 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.117 -22.727 15.886 30.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.022 4.022 3 N -0.322 5.322 4 C 0.382 3.618 5 O -0.406 6.406 6 C -0.181 4.181 7 O -0.057 6.057 8 C 0.024 3.976 9 C -0.028 4.028 10 C -0.187 4.187 11 C -0.220 4.220 12 C -0.190 4.190 13 N -0.234 5.234 14 C -0.055 4.055 15 C -0.133 4.133 16 C 0.050 3.950 17 H 0.144 0.856 18 C -0.178 4.178 19 C 0.037 3.963 20 N -0.343 5.343 21 C -0.362 4.362 22 H 0.092 0.908 23 C -0.262 4.262 24 N -0.600 5.600 25 Si 0.809 3.191 26 H -0.193 1.193 27 H -0.214 1.214 28 H -0.220 1.220 29 C 0.002 3.998 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.135 0.865 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.017 0.983 49 H 0.056 0.944 50 H 0.038 0.962 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.806 -21.998 16.389 30.274 hybrid contribution 0.838 1.245 -1.056 1.835 sum -11.968 -20.753 15.332 28.443 Atomic orbital electron populations 1.22120 0.94314 1.03628 1.01452 1.22008 0.95851 0.79813 1.04554 1.47935 1.64415 1.15361 1.04505 1.16727 0.78797 0.84601 0.81696 1.90973 1.44185 1.19897 1.85575 1.22672 1.08829 0.89734 0.96827 1.84673 1.57928 1.33973 1.29137 1.27316 0.95305 0.97674 0.77337 1.20058 0.91376 0.88955 1.02442 1.22047 0.92527 1.04685 0.99410 1.23169 1.03672 1.02024 0.93104 1.23109 1.00288 0.93740 1.01863 1.70363 1.15291 1.03323 1.34452 1.22235 0.97471 0.98009 0.87778 1.20302 0.99732 0.90103 1.03195 1.22048 0.93861 0.94068 0.84979 0.85559 1.23174 0.98500 0.95850 1.00274 1.21592 0.82390 0.99576 0.92741 1.44576 1.04319 1.17182 1.68265 1.19424 0.86992 0.98652 1.31098 0.90774 1.25630 1.00153 0.98984 1.01385 1.70061 1.23001 1.20485 1.46405 0.84968 0.78749 0.78236 0.77125 1.19348 1.21395 1.21960 1.21640 0.95509 0.87053 0.95571 0.94093 0.92604 0.88631 0.87586 0.89604 0.85326 0.85911 0.89000 0.87686 0.89154 0.87952 0.86550 0.89926 0.88965 0.90787 0.89640 0.92601 0.91504 0.98298 0.94363 0.96158 0.95573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.68 71.98 0.70 -1.98 16 2 C 0.10 1.98 5.66 86.38 0.49 2.47 16 3 N -0.59 -17.89 2.54 -795.90 -2.02 -19.92 16 4 C 0.59 21.03 6.72 86.46 0.58 21.61 16 5 O -0.53 -23.42 11.23 -4.30 -0.05 -23.46 16 6 C -0.13 -3.77 6.56 24.05 0.16 -3.62 16 7 O -0.17 -3.87 5.97 -7.09 -0.04 -3.91 16 8 C 0.23 4.66 7.53 88.29 0.66 5.32 16 9 C 0.01 0.09 6.12 29.85 0.18 0.28 16 10 C -0.17 -1.80 5.72 -10.79 -0.06 -1.86 16 11 C -0.18 -1.78 10.18 30.59 0.31 -1.46 16 12 C -0.15 -1.00 10.25 30.60 0.31 -0.69 16 13 N -0.50 -13.20 11.26 -291.05 -3.28 -16.48 16 14 C 0.07 2.06 7.16 41.83 0.30 2.36 16 15 C -0.08 -2.20 9.81 71.23 0.70 -1.50 16 16 C 0.15 5.46 3.44 46.18 0.16 5.62 16 17 H 0.13 3.67 7.84 -2.39 -0.02 3.66 16 18 C -0.14 -5.73 6.40 31.99 0.20 -5.52 16 19 C 0.16 8.54 5.89 86.86 0.51 9.05 16 20 N -0.62 -34.37 3.39 -692.00 -2.35 -36.71 16 21 C -0.23 -14.01 10.27 84.03 0.86 -13.15 16 22 H 0.07 4.35 7.83 -2.91 -0.02 4.33 16 23 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16 24 N -0.95 -59.34 10.09 21.65 0.22 -59.12 16 25 Si 0.98 48.24 29.55 68.60 2.03 50.27 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 29 C 0.13 5.84 6.47 86.73 0.56 6.40 16 30 H 0.04 0.84 6.58 -2.38 -0.02 0.82 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.67 7.90 -2.39 -0.02 1.65 16 34 H 0.09 1.64 5.80 -2.38 -0.01 1.63 16 35 H 0.13 0.64 8.14 -2.39 -0.02 0.63 16 36 H 0.12 0.99 7.88 -2.39 -0.02 0.97 16 37 H 0.09 1.30 8.07 -2.39 -0.02 1.28 16 38 H 0.10 0.89 8.03 -2.39 -0.02 0.87 16 39 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.07 2.48 6.61 -2.39 -0.02 2.47 16 45 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 46 H 0.06 2.58 6.00 -2.39 -0.01 2.57 16 47 H 0.07 4.07 5.87 -2.39 -0.01 4.06 16 48 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 49 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 50 H 0.02 1.01 6.11 -2.39 -0.01 1.00 16 51 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -78.45 401.11 2.54 -75.91 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.93 Total: 13.79 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 7.10 Total: 19.64 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -7.43 Total: -132.23 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.09 Total: -27.38 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -78.45 2.54 -75.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033836519.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.869 kcal (2) G-P(sol) polarization free energy of solvation -78.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds