Wall clock time and date at job start Wed Apr 1 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47280 * 2 1 4 4 C 1.34785 * 119.99867 * 83.58861 * 3 2 1 5 5 O 1.21603 * 119.99936 * 185.27774 * 4 3 2 6 6 C 1.47419 * 119.99540 * 5.00501 * 4 3 2 7 7 C 1.36096 * 126.44560 * 174.43336 * 6 4 3 8 8 O 1.34251 * 106.95035 * 179.97438 * 7 6 4 9 9 C 1.34053 * 108.22982 * 359.97438 * 8 7 6 10 10 C 1.50694 * 125.38154 * 179.97438 * 9 8 7 11 11 C 1.54265 * 110.03194 * 57.14899 * 10 9 8 12 12 C 1.54896 * 104.19411 * 217.10655 * 11 10 9 13 13 C 1.54881 * 102.75082 * 37.93664 * 12 11 10 14 14 C 1.53873 * 110.03424 * 299.97723 * 10 9 8 15 15 N 1.29946 * 109.23914 * 359.72749 * 9 8 7 16 16 C 1.46497 * 120.00303 * 263.59504 * 3 2 1 17 17 H 1.08998 * 110.88763 * 10.07655 * 16 3 2 18 18 C 1.55161 * 111.00027 * 246.20273 * 16 3 2 19 19 C 1.54328 * 102.94061 * 277.42394 * 18 16 3 20 20 N 1.47020 * 107.27175 * 337.80876 * 19 18 16 21 21 C 1.36936 * 125.64954 * 178.98516 * 20 19 18 22 22 H 1.08000 * 120.00171 * 179.97438 * 21 20 19 23 23 C 1.38820 * 119.99734 * 359.97438 * 21 20 19 24 24 N 1.31615 * 120.00081 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99766 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47046 * 89.99835 * 25 23 21 27 27 H 1.48498 * 109.47051 * 209.99791 * 25 23 21 28 28 H 1.48499 * 109.47016 * 329.99644 * 25 23 21 29 29 C 1.47425 * 108.70245 * 358.93791 * 20 19 18 30 30 H 1.09002 * 109.47041 * 59.99272 * 1 2 3 31 31 H 1.08998 * 109.47325 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46546 * 299.99810 * 1 2 3 33 33 H 1.08997 * 109.46921 * 240.00681 * 2 1 3 34 34 H 1.08995 * 109.47302 * 120.00432 * 2 1 3 35 35 H 1.07999 * 126.52165 * 359.97438 * 7 6 4 36 36 H 1.09005 * 110.01936 * 178.58842 * 10 9 8 37 37 H 1.09000 * 110.48360 * 335.77775 * 11 10 9 38 38 H 1.08995 * 110.49105 * 98.42860 * 11 10 9 39 39 H 1.08999 * 110.74951 * 279.62075 * 12 11 10 40 40 H 1.09003 * 110.75176 * 156.25619 * 12 11 10 41 41 H 1.08992 * 110.48964 * 203.37632 * 13 12 11 42 42 H 1.09009 * 110.48355 * 80.73667 * 13 12 11 43 43 H 1.09000 * 110.03770 * 238.56628 * 14 10 9 44 44 H 1.08998 * 110.03601 * 359.95548 * 14 10 9 45 45 H 1.08996 * 110.72106 * 35.78732 * 18 16 3 46 46 H 1.09004 * 110.71877 * 159.06209 * 18 16 3 47 47 H 1.09001 * 109.87976 * 97.22585 * 19 18 16 48 48 H 1.09000 * 109.88115 * 218.39005 * 19 18 16 49 49 H 0.96997 * 119.99921 * 180.02562 * 24 23 21 50 50 H 1.08993 * 110.37223 * 265.29095 * 29 20 19 51 51 H 1.09007 * 110.36306 * 142.96828 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1202 2.0600 1.1600 5 8 2.4332 3.2350 1.1514 6 6 1.8460 1.3795 2.4386 7 6 2.0099 1.9026 3.6843 8 8 1.6454 0.9517 4.5592 9 6 1.2654 -0.1316 3.8670 10 6 0.7821 -1.4260 4.4684 11 6 -0.4371 -1.1641 5.3766 12 6 -0.2480 -2.1467 6.5590 13 6 1.2837 -2.1166 6.7868 14 6 1.8762 -2.0317 5.3649 15 7 1.3747 0.1127 2.5954 16 6 2.3960 2.0247 -1.2607 17 1 2.0926 1.4171 -2.1133 18 6 3.9191 2.3179 -1.3010 19 6 4.0363 3.6449 -0.5217 20 7 2.7188 4.2957 -0.5673 21 6 2.3969 5.4883 0.0236 22 1 1.3963 5.8841 -0.0689 23 6 3.3567 6.1886 0.7414 24 7 4.5760 5.7060 0.8546 25 14 2.9178 7.8159 1.5469 26 1 2.4248 7.5687 2.9257 27 1 4.1223 8.6828 1.5999 28 1 1.8573 8.4898 0.7554 29 6 1.8019 3.4522 -1.3555 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.3655 2.8939 3.9235 36 1 0.5159 -2.1282 3.6782 37 1 -0.4332 -0.1338 5.7325 38 1 -1.3631 -1.3814 4.8443 39 1 -0.5782 -3.1486 6.2850 40 1 -0.7772 -1.7927 7.4437 41 1 1.6135 -3.0289 7.2837 42 1 1.5654 -1.2401 7.3704 43 1 2.1404 -3.0280 5.0105 44 1 2.7571 -1.3897 5.3645 45 1 4.4776 1.5266 -0.8011 46 1 4.2608 2.4427 -2.3285 47 1 4.3149 3.4439 0.5127 48 1 4.7828 4.2857 -0.9910 49 1 5.2465 6.1952 1.3565 50 1 1.7777 3.7849 -2.3931 51 1 0.8006 3.4756 -0.9253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034001846.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:41 Heat of formation + Delta-G solvation = 65.013175 kcal Electronic energy + Delta-G solvation = -32826.147922 eV Core-core repulsion = 28730.120325 eV Total energy + Delta-G solvation = -4096.027597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.22961 -39.58702 -38.32928 -36.12557 -35.29018 -34.22712 -32.06406 -31.17758 -29.79061 -29.06411 -28.69026 -28.05052 -27.05488 -24.58003 -23.69325 -22.61959 -22.36268 -21.22362 -20.93840 -19.80460 -19.70569 -18.30001 -17.07868 -16.79774 -16.47740 -16.17422 -15.90764 -15.56941 -15.42132 -14.51312 -14.36778 -14.02664 -13.88212 -13.67611 -13.58564 -13.53988 -13.16058 -12.90847 -12.07316 -12.03304 -11.92653 -11.81986 -11.75329 -11.59754 -11.47182 -11.42445 -11.36023 -11.22359 -11.06582 -10.91570 -10.73433 -10.69982 -10.66362 -10.56598 -10.19430 -9.91634 -9.69833 -9.61232 -9.35967 -8.81763 -8.59218 -8.30859 -7.69338 -6.19076 -5.36096 -2.60182 1.48307 2.34949 2.74402 3.55026 3.55722 3.60557 3.61845 3.91585 4.09256 4.24142 4.27550 4.61885 4.76632 4.98514 5.06180 5.13019 5.16494 5.20201 5.30825 5.32031 5.39825 5.51180 5.53874 5.57196 5.60369 5.68308 5.76623 5.80853 5.81293 5.82993 5.83543 5.92992 5.97078 5.97564 5.99543 6.04527 6.07784 6.22277 6.34020 6.42672 6.63833 6.69176 6.71699 6.75643 6.86637 7.46041 7.71934 7.82901 7.95353 8.14372 8.20772 8.60515 9.20646 9.56427 10.18540 10.85787 11.77204 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003552 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.068272 B = 7881.483728 C = 9217.587000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.105 3.895 3 N -0.599 5.599 4 C 0.541 3.459 5 O -0.398 6.398 6 C -0.052 4.052 7 C -0.002 4.002 8 O -0.199 6.199 9 C 0.183 3.817 10 C 0.007 3.993 11 C -0.121 4.121 12 C -0.123 4.123 13 C -0.125 4.125 14 C -0.120 4.120 15 N -0.454 5.454 16 C 0.134 3.866 17 H 0.082 0.918 18 C -0.161 4.161 19 C 0.192 3.808 20 N -0.565 5.565 21 C -0.184 4.184 22 H 0.066 0.934 23 C -0.010 4.010 24 N -0.923 5.923 25 Si 0.898 3.102 26 H -0.295 1.295 27 H -0.295 1.295 28 H -0.287 1.287 29 C 0.131 3.869 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.228 0.772 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.243 0.757 50 H 0.022 0.978 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.930 -20.548 7.262 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 N -0.336 5.336 4 C 0.324 3.676 5 O -0.263 6.263 6 C -0.172 4.172 7 C -0.075 4.075 8 O -0.085 6.085 9 C -0.025 4.025 10 C -0.012 4.012 11 C -0.159 4.159 12 C -0.161 4.161 13 C -0.162 4.162 14 C -0.159 4.159 15 N -0.185 5.185 16 C 0.030 3.970 17 H 0.100 0.900 18 C -0.200 4.200 19 C 0.067 3.933 20 N -0.291 5.291 21 C -0.313 4.313 22 H 0.084 0.916 23 C -0.204 4.204 24 N -0.573 5.573 25 Si 0.731 3.269 26 H -0.224 1.224 27 H -0.222 1.222 28 H -0.213 1.213 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.245 0.755 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.039 0.961 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.782 -20.074 6.924 22.615 hybrid contribution -0.079 1.308 0.954 1.621 sum -7.861 -18.766 7.877 21.817 Atomic orbital electron populations 1.22023 0.96825 1.00775 1.01414 1.21767 0.94051 0.83007 1.03052 1.47552 1.66671 1.13631 1.05722 1.17330 0.81331 0.87311 0.81675 1.91714 1.39433 1.10978 1.84159 1.22469 1.06873 0.91286 0.96596 1.25335 1.00572 0.94385 0.87165 1.84307 1.63229 1.21693 1.39304 1.26210 1.00004 0.90317 0.85977 1.20361 0.95557 0.87156 0.98152 1.22493 0.96754 1.00718 0.95924 1.22499 0.96213 0.99393 0.97969 1.22382 0.95319 1.02133 0.96399 1.22247 0.97662 1.01324 0.94619 1.70989 1.17006 1.14803 1.15677 1.22287 0.95652 0.94688 0.84412 0.90046 1.23401 0.94838 1.01109 1.00701 1.21080 0.87548 0.87116 0.97536 1.44115 1.06246 1.20610 1.58092 1.18794 0.95283 0.93202 1.24049 0.91625 1.24544 0.96126 0.98389 1.01387 1.69952 1.02289 1.38391 1.46637 0.86305 0.76649 0.84413 0.79569 1.22356 1.22215 1.21269 1.21760 0.94347 0.88819 0.94786 0.93616 0.92771 0.92717 0.92279 0.87838 0.75532 0.86865 0.90789 0.90630 0.91085 0.91140 0.91278 0.91289 0.90556 0.91132 0.92514 0.92012 0.92740 0.95181 0.94662 0.96070 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.75 37.16 0.36 -1.66 16 2 C 0.10 1.51 5.69 -4.04 -0.02 1.48 16 3 N -0.60 -10.83 2.57 -164.93 -0.42 -11.26 16 4 C 0.54 11.24 7.06 -12.52 -0.09 11.16 16 5 O -0.40 -10.05 8.87 5.27 0.05 -10.00 16 6 C -0.05 -0.93 6.51 -83.02 -0.54 -1.47 16 7 C 0.00 -0.03 11.95 29.96 0.36 0.32 16 8 O -0.20 -2.87 10.55 6.52 0.07 -2.81 16 9 C 0.18 2.39 6.50 -13.08 -0.09 2.31 16 10 C 0.01 0.06 3.44 -90.66 -0.31 -0.25 16 11 C -0.12 -0.95 6.35 -25.07 -0.16 -1.11 16 12 C -0.12 -0.76 6.91 -24.74 -0.17 -0.93 16 13 C -0.12 -0.83 6.83 -25.07 -0.17 -1.00 16 14 C -0.12 -0.94 6.45 -25.61 -0.17 -1.11 16 15 N -0.45 -6.85 6.72 -7.65 -0.05 -6.90 16 16 C 0.13 2.48 3.77 -65.78 -0.25 2.23 16 17 H 0.08 1.25 7.90 -51.93 -0.41 0.84 16 18 C -0.16 -3.21 6.52 -24.89 -0.16 -3.38 16 19 C 0.19 4.93 4.22 -3.06 -0.01 4.92 16 20 N -0.57 -15.03 1.73 -170.07 -0.29 -15.33 16 21 C -0.18 -5.39 8.73 -15.06 -0.13 -5.53 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 24 N -0.92 -28.37 10.31 55.49 0.57 -27.80 16 25 Si 0.90 23.44 29.55 -169.99 -5.02 18.41 16 26 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 27 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 C 0.13 2.88 6.18 -2.53 -0.02 2.86 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.84 7.18 -51.93 -0.37 0.46 16 33 H 0.06 0.74 7.92 -51.93 -0.41 0.33 16 34 H 0.10 1.54 5.22 -51.93 -0.27 1.27 16 35 H 0.23 3.65 8.06 -52.49 -0.42 3.23 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.69 7.71 -51.93 -0.40 0.29 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.05 1.58 5.85 -51.93 -0.30 1.28 16 48 H 0.03 0.86 7.51 -51.93 -0.39 0.47 16 49 H 0.24 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -33.95 390.98 -9.30 -43.25 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.42 Total: -1.92 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -1.66 Total: 8.47 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.20 Total: -61.29 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.12 Total: -12.81 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.95 -9.30 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034001846.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.260 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds