Wall clock time and date at job start Wed Apr 1 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47280 * 2 1 4 4 C 1.34785 * 119.99867 * 83.58861 * 3 2 1 5 5 O 1.21603 * 119.99936 * 185.27774 * 4 3 2 6 6 C 1.47419 * 119.99540 * 5.00501 * 4 3 2 7 7 C 1.36096 * 126.44560 * 174.43336 * 6 4 3 8 8 O 1.34251 * 106.95035 * 179.97438 * 7 6 4 9 9 C 1.34053 * 108.22982 * 359.97438 * 8 7 6 10 10 C 1.50694 * 125.38154 * 179.97438 * 9 8 7 11 11 C 1.54265 * 110.03194 * 57.14899 * 10 9 8 12 12 C 1.54896 * 104.19411 * 217.10655 * 11 10 9 13 13 C 1.54881 * 102.75082 * 37.93664 * 12 11 10 14 14 C 1.53873 * 110.03424 * 299.97723 * 10 9 8 15 15 N 1.29946 * 109.23914 * 359.72749 * 9 8 7 16 16 C 1.46497 * 120.00303 * 263.59504 * 3 2 1 17 17 H 1.08998 * 110.88763 * 10.07655 * 16 3 2 18 18 C 1.55161 * 111.00027 * 246.20273 * 16 3 2 19 19 C 1.54328 * 102.94061 * 277.42394 * 18 16 3 20 20 N 1.47020 * 107.27175 * 337.80876 * 19 18 16 21 21 C 1.36936 * 125.64954 * 178.98516 * 20 19 18 22 22 H 1.08000 * 120.00171 * 179.97438 * 21 20 19 23 23 C 1.38820 * 119.99734 * 359.97438 * 21 20 19 24 24 N 1.31615 * 120.00081 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99766 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47046 * 89.99835 * 25 23 21 27 27 H 1.48498 * 109.47051 * 209.99791 * 25 23 21 28 28 H 1.48499 * 109.47016 * 329.99644 * 25 23 21 29 29 C 1.47425 * 108.70245 * 358.93791 * 20 19 18 30 30 H 1.09002 * 109.47041 * 59.99272 * 1 2 3 31 31 H 1.08998 * 109.47325 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46546 * 299.99810 * 1 2 3 33 33 H 1.08997 * 109.46921 * 240.00681 * 2 1 3 34 34 H 1.08995 * 109.47302 * 120.00432 * 2 1 3 35 35 H 1.07999 * 126.52165 * 359.97438 * 7 6 4 36 36 H 1.09005 * 110.01936 * 178.58842 * 10 9 8 37 37 H 1.09000 * 110.48360 * 335.77775 * 11 10 9 38 38 H 1.08995 * 110.49105 * 98.42860 * 11 10 9 39 39 H 1.08999 * 110.74951 * 279.62075 * 12 11 10 40 40 H 1.09003 * 110.75176 * 156.25619 * 12 11 10 41 41 H 1.08992 * 110.48964 * 203.37632 * 13 12 11 42 42 H 1.09009 * 110.48355 * 80.73667 * 13 12 11 43 43 H 1.09000 * 110.03770 * 238.56628 * 14 10 9 44 44 H 1.08998 * 110.03601 * 359.95548 * 14 10 9 45 45 H 1.08996 * 110.72106 * 35.78732 * 18 16 3 46 46 H 1.09004 * 110.71877 * 159.06209 * 18 16 3 47 47 H 1.09001 * 109.87976 * 97.22585 * 19 18 16 48 48 H 1.09000 * 109.88115 * 218.39005 * 19 18 16 49 49 H 0.96997 * 119.99921 * 180.02562 * 24 23 21 50 50 H 1.08993 * 110.37223 * 265.29095 * 29 20 19 51 51 H 1.09007 * 110.36306 * 142.96828 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1202 2.0600 1.1600 5 8 2.4332 3.2350 1.1514 6 6 1.8460 1.3795 2.4386 7 6 2.0099 1.9026 3.6843 8 8 1.6454 0.9517 4.5592 9 6 1.2654 -0.1316 3.8670 10 6 0.7821 -1.4260 4.4684 11 6 -0.4371 -1.1641 5.3766 12 6 -0.2480 -2.1467 6.5590 13 6 1.2837 -2.1166 6.7868 14 6 1.8762 -2.0317 5.3649 15 7 1.3747 0.1127 2.5954 16 6 2.3960 2.0247 -1.2607 17 1 2.0926 1.4171 -2.1133 18 6 3.9191 2.3179 -1.3010 19 6 4.0363 3.6449 -0.5217 20 7 2.7188 4.2957 -0.5673 21 6 2.3969 5.4883 0.0236 22 1 1.3963 5.8841 -0.0689 23 6 3.3567 6.1886 0.7414 24 7 4.5760 5.7060 0.8546 25 14 2.9178 7.8159 1.5469 26 1 2.4248 7.5687 2.9257 27 1 4.1223 8.6828 1.5999 28 1 1.8573 8.4898 0.7554 29 6 1.8019 3.4522 -1.3555 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.3655 2.8939 3.9235 36 1 0.5159 -2.1282 3.6782 37 1 -0.4332 -0.1338 5.7325 38 1 -1.3631 -1.3814 4.8443 39 1 -0.5782 -3.1486 6.2850 40 1 -0.7772 -1.7927 7.4437 41 1 1.6135 -3.0289 7.2837 42 1 1.5654 -1.2401 7.3704 43 1 2.1404 -3.0280 5.0105 44 1 2.7571 -1.3897 5.3645 45 1 4.4776 1.5266 -0.8011 46 1 4.2608 2.4427 -2.3285 47 1 4.3149 3.4439 0.5127 48 1 4.7828 4.2857 -0.9910 49 1 5.2465 6.1952 1.3565 50 1 1.7777 3.7849 -2.3931 51 1 0.8006 3.4756 -0.9253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034001846.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:40 Heat of formation + Delta-G solvation = 44.819137 kcal Electronic energy + Delta-G solvation = -32827.023601 eV Core-core repulsion = 28730.120325 eV Total energy + Delta-G solvation = -4096.903276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.44390 -41.17644 -38.98138 -37.86834 -36.76357 -35.58670 -34.01612 -32.18046 -31.41319 -30.40946 -29.64997 -29.08984 -28.72429 -26.49386 -25.30736 -23.80161 -23.40795 -22.46112 -21.78380 -21.53467 -20.89285 -19.59197 -18.80114 -18.12203 -17.88963 -17.52026 -17.15896 -16.66920 -16.48812 -16.35127 -15.98414 -15.60305 -15.46518 -14.84351 -14.67379 -14.47313 -14.30499 -14.26791 -13.66717 -13.58207 -13.50750 -13.30301 -12.86722 -12.82153 -12.72879 -12.65251 -12.49165 -12.37009 -12.18664 -12.02802 -11.98206 -11.97072 -11.93439 -11.80892 -11.67758 -11.60825 -11.44000 -11.38334 -11.03222 -10.57152 -10.38812 -9.91272 -9.29020 -8.29069 -7.61156 -4.84222 0.18879 1.11656 1.43070 1.45154 1.52578 1.58930 2.17516 2.57231 2.61474 2.82799 3.56219 3.60545 3.65196 3.67290 3.84738 3.95508 4.01985 4.07424 4.22373 4.28196 4.40179 4.46765 4.49452 4.54052 4.54517 4.56253 4.63805 4.69855 4.74993 4.78883 4.80154 4.85524 4.90844 4.94985 4.98364 5.06375 5.07553 5.14567 5.16670 5.25071 5.26688 5.32322 5.34385 5.49541 5.54926 5.58827 5.83934 5.99836 6.07209 6.42343 6.47660 6.74294 7.34150 7.66071 8.04584 8.69451 9.50729 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003552 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.068272 B = 7881.483728 C = 9217.587000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.102 3.898 3 N -0.596 5.596 4 C 0.535 3.465 5 O -0.457 6.457 6 C -0.070 4.070 7 C -0.010 4.010 8 O -0.197 6.197 9 C 0.198 3.802 10 C 0.006 3.994 11 C -0.121 4.121 12 C -0.116 4.116 13 C -0.125 4.125 14 C -0.119 4.119 15 N -0.456 5.456 16 C 0.145 3.855 17 H 0.133 0.867 18 C -0.146 4.146 19 C 0.204 3.796 20 N -0.578 5.578 21 C -0.187 4.187 22 H 0.060 0.940 23 C -0.066 4.066 24 N -0.948 5.948 25 Si 0.957 3.043 26 H -0.297 1.297 27 H -0.298 1.298 28 H -0.275 1.275 29 C 0.126 3.874 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.028 0.972 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.221 0.779 36 H 0.133 0.867 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.049 0.951 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.014 0.986 48 H -0.013 1.013 49 H 0.233 0.767 50 H 0.037 0.963 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 -24.106 6.775 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 N -0.331 5.331 4 C 0.319 3.681 5 O -0.326 6.326 6 C -0.189 4.189 7 C -0.084 4.084 8 O -0.084 6.084 9 C -0.010 4.010 10 C -0.013 4.013 11 C -0.159 4.159 12 C -0.153 4.153 13 C -0.162 4.162 14 C -0.157 4.157 15 N -0.186 5.186 16 C 0.041 3.959 17 H 0.150 0.850 18 C -0.185 4.185 19 C 0.079 3.921 20 N -0.303 5.303 21 C -0.317 4.317 22 H 0.078 0.922 23 C -0.257 4.257 24 N -0.600 5.600 25 Si 0.789 3.211 26 H -0.225 1.225 27 H -0.225 1.225 28 H -0.201 1.201 29 C -0.001 4.001 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.238 0.762 36 H 0.151 0.849 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.105 0.895 47 H 0.032 0.968 48 H 0.005 0.995 49 H 0.043 0.957 50 H 0.055 0.945 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -9.600 -23.691 6.393 26.350 hybrid contribution 0.388 2.292 1.152 2.595 sum -9.213 -21.399 7.545 24.489 Atomic orbital electron populations 1.21929 0.95791 1.02245 1.00106 1.22004 0.94773 0.80765 1.04438 1.47697 1.65673 1.14908 1.04801 1.17718 0.80277 0.86987 0.83070 1.91683 1.42233 1.13405 1.85285 1.22195 1.08297 0.92706 0.95749 1.25236 1.01000 0.94754 0.87390 1.84331 1.63254 1.21837 1.38981 1.27247 0.97467 0.90752 0.85566 1.20742 0.96362 0.85156 0.99052 1.22510 0.96622 1.00231 0.96543 1.22495 0.95701 0.99800 0.97312 1.22395 0.95793 1.02458 0.95556 1.22269 0.96416 1.01777 0.95223 1.70969 1.17787 1.13283 1.16585 1.22301 0.93915 0.93476 0.86191 0.84978 1.23244 0.96429 0.97763 1.01104 1.20727 0.86377 0.89182 0.95771 1.44250 1.07485 1.20475 1.58058 1.19017 0.94814 0.94288 1.23566 0.92238 1.25215 0.96258 1.01614 1.02657 1.70196 1.02963 1.39351 1.47524 0.85359 0.76353 0.80933 0.78493 1.22509 1.22498 1.20067 1.21947 0.93101 0.90615 0.94411 0.93635 0.89851 0.95276 0.89180 0.88152 0.76250 0.84916 0.92746 0.89472 0.89192 0.90599 0.89562 0.92549 0.88457 0.93206 0.91545 0.89498 0.96818 0.99485 0.95718 0.94536 0.96060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.75 71.98 0.70 -2.66 16 2 C 0.10 2.61 5.69 86.38 0.49 3.11 16 3 N -0.60 -20.69 2.57 -793.98 -2.04 -22.73 16 4 C 0.54 22.75 7.06 86.66 0.61 23.36 16 5 O -0.46 -24.21 8.87 -4.04 -0.04 -24.24 16 6 C -0.07 -2.57 6.51 40.41 0.26 -2.31 16 7 C -0.01 -0.37 11.95 67.32 0.80 0.44 16 8 O -0.20 -5.81 10.55 0.42 0.00 -5.80 16 9 C 0.20 5.01 6.50 88.39 0.57 5.59 16 10 C 0.01 0.10 3.44 -10.82 -0.04 0.06 16 11 C -0.12 -1.64 6.35 31.67 0.20 -1.43 16 12 C -0.12 -1.08 6.91 31.88 0.22 -0.86 16 13 C -0.12 -1.37 6.83 31.67 0.22 -1.16 16 14 C -0.12 -1.60 6.45 31.32 0.20 -1.39 16 15 N -0.46 -13.40 6.72 -293.03 -1.97 -15.37 16 16 C 0.15 5.04 3.77 46.38 0.17 5.21 16 17 H 0.13 3.35 7.90 -2.39 -0.02 3.33 16 18 C -0.15 -5.64 6.52 31.79 0.21 -5.44 16 19 C 0.20 10.92 4.22 86.73 0.37 11.29 16 20 N -0.58 -31.67 1.73 -691.98 -1.20 -32.86 16 21 C -0.19 -11.35 8.73 84.04 0.73 -10.61 16 22 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 23 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 24 N -0.95 -61.51 10.31 21.65 0.22 -61.29 16 25 Si 0.96 50.14 29.55 68.60 2.03 52.16 16 26 H -0.30 -15.47 7.11 99.48 0.71 -14.77 16 27 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 28 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 29 C 0.13 5.48 6.18 86.85 0.54 6.01 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.03 0.83 7.18 -2.38 -0.02 0.81 16 33 H 0.09 1.81 7.92 -2.39 -0.02 1.79 16 34 H 0.10 2.72 5.22 -2.39 -0.01 2.70 16 35 H 0.22 7.81 8.06 -2.91 -0.02 7.79 16 36 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.05 0.96 7.71 -2.39 -0.02 0.94 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 0.89 7.67 -2.39 -0.02 0.87 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 47 H 0.01 0.85 5.85 -2.39 -0.01 0.83 16 48 H -0.01 -0.78 7.51 -2.39 -0.02 -0.80 16 49 H 0.23 14.91 8.31 -92.71 -0.77 14.14 16 50 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -79.54 390.98 4.66 -74.88 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.92 Total: 9.64 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 6.73 Total: 25.61 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -4.99 Total: -132.25 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.03 Total: -30.05 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.16 kcal Total: -79.54 4.66 -74.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034001846.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.701 kcal (2) G-P(sol) polarization free energy of solvation -79.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds