Wall clock time and date at job start Wed Apr 1 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47107 * 2 1 4 4 C 1.34775 * 120.00035 * 84.26040 * 3 2 1 5 5 O 1.21511 * 120.00060 * 174.57648 * 4 3 2 6 6 C 1.48152 * 119.99703 * 354.57782 * 4 3 2 7 7 C 1.39173 * 119.68735 * 181.88567 * 6 4 3 8 8 C 1.38742 * 119.18233 * 179.97438 * 7 6 4 9 9 C 1.38368 * 118.56263 * 359.72680 * 8 7 6 10 10 C 1.39250 * 119.30317 * 0.53688 * 9 8 7 11 11 O 1.35673 * 119.61447 * 179.72568 * 10 9 8 12 12 C 1.42897 * 116.99638 * 177.36294 * 11 10 9 13 13 C 1.52995 * 109.46965 * 135.56055 * 12 11 10 14 14 C 1.53003 * 109.46708 * 255.55684 * 12 11 10 15 15 N 1.31927 * 120.76710 * 359.45205 * 10 9 8 16 16 C 1.46500 * 120.00084 * 264.25713 * 3 2 1 17 17 H 1.08998 * 110.88935 * 356.12551 * 16 3 2 18 18 C 1.55160 * 111.00376 * 120.00047 * 16 3 2 19 19 C 1.54326 * 102.94249 * 153.57662 * 18 16 3 20 20 N 1.47016 * 107.27148 * 337.80587 * 19 18 16 21 21 C 1.36935 * 125.64834 * 178.98242 * 20 19 18 22 22 H 1.08004 * 119.99968 * 179.97438 * 21 20 19 23 23 C 1.38812 * 119.99986 * 359.97438 * 21 20 19 24 24 N 1.31617 * 119.99862 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99969 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47184 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47224 * 120.00017 * 25 23 21 28 28 H 1.48503 * 109.47148 * 239.99815 * 25 23 21 29 29 C 1.47423 * 108.70412 * 358.94442 * 20 19 18 30 30 H 1.08992 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46971 * 300.00029 * 1 2 3 32 32 H 1.09003 * 109.47209 * 59.99609 * 1 2 3 33 33 H 1.09006 * 109.46852 * 240.00505 * 2 1 3 34 34 H 1.08994 * 109.47213 * 120.00081 * 2 1 3 35 35 H 1.07994 * 120.40889 * 359.95641 * 7 6 4 36 36 H 1.08000 * 120.71471 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.35166 * 180.25951 * 9 8 7 38 38 H 1.08994 * 109.47365 * 15.55809 * 12 11 10 39 39 H 1.09007 * 109.47502 * 59.99849 * 13 12 11 40 40 H 1.09000 * 109.47422 * 179.97438 * 13 12 11 41 41 H 1.08997 * 109.47596 * 299.99295 * 13 12 11 42 42 H 1.09000 * 109.46747 * 180.02562 * 14 12 11 43 43 H 1.08994 * 109.47309 * 300.00159 * 14 12 11 44 44 H 1.09001 * 109.46977 * 60.00243 * 14 12 11 45 45 H 1.08997 * 110.72121 * 271.94312 * 18 16 3 46 46 H 1.09000 * 110.72199 * 35.21458 * 18 16 3 47 47 H 1.08995 * 109.88129 * 97.22932 * 19 18 16 48 48 H 1.08998 * 109.88269 * 218.39169 * 19 18 16 49 49 H 0.97002 * 119.99562 * 179.97438 * 24 23 21 50 50 H 1.09006 * 110.36816 * 265.28840 * 29 20 19 51 51 H 1.08996 * 110.37062 * 142.96577 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1329 2.0555 1.1613 5 8 2.6297 3.1643 1.1736 6 6 1.6532 1.4446 2.4229 7 6 1.7386 2.1622 3.6123 8 6 1.2858 1.5802 4.7875 9 6 0.7576 0.3025 4.7323 10 6 0.7067 -0.3617 3.5095 11 8 0.1953 -1.6169 3.4490 12 6 0.1166 -2.2237 2.1577 13 6 0.6078 -3.6701 2.2432 14 6 -1.3347 -2.2057 1.6735 15 7 1.1452 0.2175 2.4082 16 6 2.3822 2.0295 -1.2623 17 1 2.2979 1.3322 -2.0958 18 6 1.5185 3.2951 -1.5068 19 6 2.4262 4.1656 -2.4011 20 7 3.8099 3.7184 -2.1852 21 6 4.9189 4.2250 -2.8086 22 1 5.8964 3.8268 -2.5797 23 6 4.7867 5.2505 -3.7349 24 7 3.5955 5.7354 -4.0142 25 14 6.2996 5.9420 -4.5849 26 1 7.5089 5.2299 -4.0996 27 1 6.1715 5.7555 -6.0525 28 1 6.4209 7.3901 -4.2787 29 6 3.8060 2.6349 -1.1856 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 2.1525 3.1596 3.6204 36 1 1.3399 2.1148 5.7244 37 1 0.3928 -0.1765 5.6289 38 1 0.7403 -1.6690 1.4569 39 1 -0.0161 -4.2250 2.9441 40 1 0.5473 -4.1332 1.2583 41 1 1.6417 -3.6830 2.5881 42 1 -1.3949 -2.6690 0.6887 43 1 -1.9585 -2.7605 2.3743 44 1 -1.6847 -1.1752 1.6126 45 1 0.5962 3.0379 -2.0277 46 1 1.3029 3.8024 -0.5664 47 1 2.1526 4.0327 -3.4478 48 1 2.3275 5.2142 -2.1203 49 1 3.5032 6.4522 -4.6612 50 1 3.9942 3.0366 -0.1898 51 1 4.5524 1.8821 -1.4391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034004128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:40 Heat of formation + Delta-G solvation = 28.866672 kcal Electronic energy + Delta-G solvation = -32366.976370 eV Core-core repulsion = 28269.381343 eV Total energy + Delta-G solvation = -4097.595027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.33970 -39.78090 -38.37555 -36.67310 -35.68499 -33.70883 -32.91108 -32.04360 -30.63631 -30.10611 -28.91720 -27.62241 -27.13477 -25.12262 -24.31604 -23.69180 -23.06854 -21.51330 -21.20435 -19.97458 -19.56783 -18.19264 -17.27190 -16.82678 -16.33041 -16.31369 -15.95410 -15.56688 -14.84423 -14.72585 -14.61235 -14.49033 -14.28189 -14.01731 -13.67352 -13.49455 -13.24060 -13.08128 -12.73933 -12.63724 -12.52732 -12.32777 -12.25671 -12.14757 -11.87339 -11.66681 -11.61447 -11.29822 -11.17611 -10.86061 -10.84372 -10.78234 -10.62048 -10.38031 -10.06775 -10.03461 -9.96244 -9.62291 -9.51648 -9.08060 -8.78006 -8.50395 -8.23516 -6.65394 -5.59721 -2.91619 0.50312 1.02046 2.69691 2.80667 3.07211 3.46793 3.52008 3.54720 3.71553 3.84103 4.44618 4.57812 4.62089 4.65521 4.68099 4.75998 4.91832 4.97316 5.11939 5.20846 5.21610 5.33618 5.37428 5.43287 5.48760 5.51651 5.56562 5.57889 5.67211 5.71780 5.76068 5.81960 5.83634 5.88109 5.92214 5.96745 6.03520 6.14365 6.32194 6.35652 6.55651 6.64683 6.72515 6.79813 6.99656 7.32374 7.41768 7.64085 7.69936 7.77130 7.94020 8.34740 8.40206 9.33963 9.94527 10.61767 11.52219 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.002764 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.767553 B =10128.774982 C =10877.866156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.582 5.582 4 C 0.560 3.440 5 O -0.504 6.504 6 C 0.126 3.874 7 C -0.150 4.150 8 C -0.047 4.047 9 C -0.174 4.174 10 C 0.314 3.686 11 O -0.299 6.299 12 C 0.059 3.941 13 C -0.156 4.156 14 C -0.168 4.168 15 N -0.507 5.507 16 C 0.129 3.871 17 H 0.093 0.907 18 C -0.151 4.151 19 C 0.185 3.815 20 N -0.602 5.602 21 C -0.220 4.220 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.923 5.923 25 Si 0.911 3.089 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.120 3.880 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.044 0.956 48 H 0.042 0.958 49 H 0.250 0.750 50 H 0.056 0.944 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.060 -18.598 17.013 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.313 5.313 4 C 0.346 3.654 5 O -0.378 6.378 6 C -0.010 4.010 7 C -0.171 4.171 8 C -0.072 4.072 9 C -0.195 4.195 10 C 0.133 3.867 11 O -0.207 6.207 12 C 0.004 3.996 13 C -0.213 4.213 14 C -0.225 4.225 15 N -0.234 5.234 16 C 0.026 3.974 17 H 0.111 0.889 18 C -0.190 4.190 19 C 0.060 3.940 20 N -0.329 5.329 21 C -0.348 4.348 22 H 0.095 0.905 23 C -0.207 4.207 24 N -0.571 5.571 25 Si 0.742 3.258 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C -0.006 4.006 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.128 0.872 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.073 0.927 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.871 -18.468 16.229 26.881 hybrid contribution 0.613 0.711 0.070 0.941 sum -10.257 -17.757 16.299 26.195 Atomic orbital electron populations 1.22415 0.96322 1.01759 1.01915 1.22059 0.94642 0.82250 1.03136 1.47823 1.63317 1.13982 1.06193 1.17873 0.79746 0.85259 0.82554 1.90845 1.42504 1.19024 1.85439 1.21059 0.95948 0.89227 0.94797 1.22018 1.01086 1.02393 0.91582 1.21445 0.93490 0.93468 0.98786 1.21257 1.05187 0.95866 0.97174 1.19959 0.90910 0.85849 0.89948 1.86314 1.76807 1.24468 1.33110 1.22831 0.98441 0.94281 0.84085 1.21988 1.01927 0.94407 1.02954 1.22276 0.95637 1.03050 1.01550 1.67780 1.15064 1.11945 1.28627 1.22520 0.97505 0.94263 0.83142 0.88942 1.23207 0.98139 0.96412 1.01218 1.21046 0.81941 0.95318 0.95669 1.44327 1.03403 1.38928 1.46247 1.19101 0.85849 1.13600 1.16274 0.90513 1.24784 0.96834 0.99130 0.99993 1.69982 1.20306 1.29657 1.37202 0.86045 0.81957 0.78712 0.79090 1.20583 1.21898 1.21847 1.22026 0.92279 0.91003 0.95337 0.91668 0.92165 0.92998 0.91405 0.87661 0.83063 0.83479 0.83945 0.87206 0.91816 0.90514 0.91915 0.90722 0.91994 0.91697 0.92609 0.91379 0.93753 0.93967 0.93964 0.92659 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 7.62 37.16 0.28 -1.48 16 2 C 0.10 1.22 5.26 -4.04 -0.02 1.20 16 3 N -0.58 -9.17 2.57 -164.66 -0.42 -9.60 16 4 C 0.56 9.40 6.88 -12.19 -0.08 9.32 16 5 O -0.50 -10.30 12.40 5.36 0.07 -10.23 16 6 C 0.13 1.70 6.42 -83.02 -0.53 1.17 16 7 C -0.15 -1.73 9.63 -39.05 -0.38 -2.10 16 8 C -0.05 -0.40 10.16 -39.35 -0.40 -0.80 16 9 C -0.17 -1.52 10.05 -39.16 -0.39 -1.91 16 10 C 0.31 3.30 7.49 -17.13 -0.13 3.17 16 11 O -0.30 -2.92 9.76 -18.72 -0.18 -3.11 16 12 C 0.06 0.48 3.02 -26.73 -0.08 0.40 16 13 C -0.16 -0.99 9.56 37.15 0.36 -0.64 16 14 C -0.17 -1.17 7.73 37.16 0.29 -0.88 16 15 N -0.51 -5.91 2.97 -9.87 -0.03 -5.94 16 16 C 0.13 2.43 3.55 -65.78 -0.23 2.19 16 17 H 0.09 1.63 7.79 -51.93 -0.40 1.22 16 18 C -0.15 -3.11 6.34 -24.89 -0.16 -3.27 16 19 C 0.19 4.82 5.37 -3.07 -0.02 4.80 16 20 N -0.60 -16.46 3.39 -170.08 -0.58 -17.03 16 21 C -0.22 -6.45 10.28 -15.06 -0.15 -6.61 16 22 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 23 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 24 N -0.92 -28.19 10.31 55.49 0.57 -27.62 16 25 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 C 0.12 2.75 6.58 -2.53 -0.02 2.74 16 30 H 0.06 0.54 4.70 -51.93 -0.24 0.30 16 31 H 0.06 0.71 6.10 -51.92 -0.32 0.40 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 34 H 0.11 1.22 4.22 -51.93 -0.22 1.00 16 35 H 0.15 1.77 7.63 -52.49 -0.40 1.37 16 36 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.11 0.97 2.77 -51.93 -0.14 0.82 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.42 7.74 -51.93 -0.40 0.01 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.52 7.07 -51.93 -0.37 0.16 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.47 6.44 -51.93 -0.33 1.14 16 47 H 0.04 1.24 7.38 -51.93 -0.38 0.85 16 48 H 0.04 1.23 7.51 -51.93 -0.39 0.84 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.06 1.36 5.34 -51.93 -0.28 1.09 16 51 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -33.98 385.46 -9.19 -43.17 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.64 Total: -0.23 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -1.77 Total: 6.85 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.46 Total: -60.19 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.12 Total: -13.33 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.98 -9.19 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034004128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.040 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds