Wall clock time and date at job start Wed Apr 1 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47107 * 2 1 4 4 C 1.34775 * 120.00035 * 84.26040 * 3 2 1 5 5 O 1.21511 * 120.00060 * 174.57648 * 4 3 2 6 6 C 1.48152 * 119.99703 * 354.57782 * 4 3 2 7 7 C 1.39173 * 119.68735 * 181.88567 * 6 4 3 8 8 C 1.38742 * 119.18233 * 179.97438 * 7 6 4 9 9 C 1.38368 * 118.56263 * 359.72680 * 8 7 6 10 10 C 1.39250 * 119.30317 * 0.53688 * 9 8 7 11 11 O 1.35673 * 119.61447 * 179.72568 * 10 9 8 12 12 C 1.42897 * 116.99638 * 177.36294 * 11 10 9 13 13 C 1.52995 * 109.46965 * 135.56055 * 12 11 10 14 14 C 1.53003 * 109.46708 * 255.55684 * 12 11 10 15 15 N 1.31927 * 120.76710 * 359.45205 * 10 9 8 16 16 C 1.46500 * 120.00084 * 264.25713 * 3 2 1 17 17 H 1.08998 * 110.88935 * 356.12551 * 16 3 2 18 18 C 1.55160 * 111.00376 * 120.00047 * 16 3 2 19 19 C 1.54326 * 102.94249 * 153.57662 * 18 16 3 20 20 N 1.47016 * 107.27148 * 337.80587 * 19 18 16 21 21 C 1.36935 * 125.64834 * 178.98242 * 20 19 18 22 22 H 1.08004 * 119.99968 * 179.97438 * 21 20 19 23 23 C 1.38812 * 119.99986 * 359.97438 * 21 20 19 24 24 N 1.31617 * 119.99862 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99969 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47184 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47224 * 120.00017 * 25 23 21 28 28 H 1.48503 * 109.47148 * 239.99815 * 25 23 21 29 29 C 1.47423 * 108.70412 * 358.94442 * 20 19 18 30 30 H 1.08992 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46971 * 300.00029 * 1 2 3 32 32 H 1.09003 * 109.47209 * 59.99609 * 1 2 3 33 33 H 1.09006 * 109.46852 * 240.00505 * 2 1 3 34 34 H 1.08994 * 109.47213 * 120.00081 * 2 1 3 35 35 H 1.07994 * 120.40889 * 359.95641 * 7 6 4 36 36 H 1.08000 * 120.71471 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.35166 * 180.25951 * 9 8 7 38 38 H 1.08994 * 109.47365 * 15.55809 * 12 11 10 39 39 H 1.09007 * 109.47502 * 59.99849 * 13 12 11 40 40 H 1.09000 * 109.47422 * 179.97438 * 13 12 11 41 41 H 1.08997 * 109.47596 * 299.99295 * 13 12 11 42 42 H 1.09000 * 109.46747 * 180.02562 * 14 12 11 43 43 H 1.08994 * 109.47309 * 300.00159 * 14 12 11 44 44 H 1.09001 * 109.46977 * 60.00243 * 14 12 11 45 45 H 1.08997 * 110.72121 * 271.94312 * 18 16 3 46 46 H 1.09000 * 110.72199 * 35.21458 * 18 16 3 47 47 H 1.08995 * 109.88129 * 97.22932 * 19 18 16 48 48 H 1.08998 * 109.88269 * 218.39169 * 19 18 16 49 49 H 0.97002 * 119.99562 * 179.97438 * 24 23 21 50 50 H 1.09006 * 110.36816 * 265.28840 * 29 20 19 51 51 H 1.08996 * 110.37062 * 142.96577 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1329 2.0555 1.1613 5 8 2.6297 3.1643 1.1736 6 6 1.6532 1.4446 2.4229 7 6 1.7386 2.1622 3.6123 8 6 1.2858 1.5802 4.7875 9 6 0.7576 0.3025 4.7323 10 6 0.7067 -0.3617 3.5095 11 8 0.1953 -1.6169 3.4490 12 6 0.1166 -2.2237 2.1577 13 6 0.6078 -3.6701 2.2432 14 6 -1.3347 -2.2057 1.6735 15 7 1.1452 0.2175 2.4082 16 6 2.3822 2.0295 -1.2623 17 1 2.2979 1.3322 -2.0958 18 6 1.5185 3.2951 -1.5068 19 6 2.4262 4.1656 -2.4011 20 7 3.8099 3.7184 -2.1852 21 6 4.9189 4.2250 -2.8086 22 1 5.8964 3.8268 -2.5797 23 6 4.7867 5.2505 -3.7349 24 7 3.5955 5.7354 -4.0142 25 14 6.2996 5.9420 -4.5849 26 1 7.5089 5.2299 -4.0996 27 1 6.1715 5.7555 -6.0525 28 1 6.4209 7.3901 -4.2787 29 6 3.8060 2.6349 -1.1856 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 2.1525 3.1596 3.6204 36 1 1.3399 2.1148 5.7244 37 1 0.3928 -0.1765 5.6289 38 1 0.7403 -1.6690 1.4569 39 1 -0.0161 -4.2250 2.9441 40 1 0.5473 -4.1332 1.2583 41 1 1.6417 -3.6830 2.5881 42 1 -1.3949 -2.6690 0.6887 43 1 -1.9585 -2.7605 2.3743 44 1 -1.6847 -1.1752 1.6126 45 1 0.5962 3.0379 -2.0277 46 1 1.3029 3.8024 -0.5664 47 1 2.1526 4.0327 -3.4478 48 1 2.3275 5.2142 -2.1203 49 1 3.5032 6.4522 -4.6612 50 1 3.9942 3.0366 -0.1898 51 1 4.5524 1.8821 -1.4391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034004128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:39 Heat of formation + Delta-G solvation = 8.321153 kcal Electronic energy + Delta-G solvation = -32367.867290 eV Core-core repulsion = 28269.381343 eV Total energy + Delta-G solvation = -4098.485948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.27493 -40.95973 -39.26756 -38.31663 -36.99429 -34.69634 -34.09310 -33.43794 -31.63872 -31.39572 -30.66028 -28.85626 -28.09810 -26.71535 -25.73829 -24.60376 -24.05084 -22.67165 -22.10673 -22.00151 -20.78372 -19.03602 -18.95080 -18.37013 -17.45486 -17.11824 -16.81598 -16.71876 -16.59656 -16.06319 -15.95940 -15.57061 -15.38655 -15.17769 -14.88036 -14.40808 -14.32860 -14.20767 -14.12217 -13.98170 -13.66069 -13.44991 -13.20574 -13.10902 -13.03279 -12.91834 -12.81911 -12.78450 -12.50806 -12.26447 -12.14175 -12.05750 -11.98656 -11.90549 -11.75486 -11.72842 -11.43371 -10.96511 -10.82689 -10.72001 -10.23544 -9.75943 -9.46064 -8.84621 -7.84678 -5.20433 -0.38999 0.25161 1.44197 1.46688 1.57012 1.69763 1.82036 2.03609 2.50082 2.77801 2.89426 3.33018 3.58070 3.71548 3.90995 3.92216 4.00121 4.02362 4.03896 4.11296 4.13524 4.22977 4.26135 4.36131 4.48577 4.50893 4.55123 4.69237 4.70682 4.76486 4.85144 4.89347 4.90510 4.92289 4.94044 4.99456 5.03653 5.09852 5.14907 5.22340 5.28871 5.33259 5.42021 5.43734 5.49871 5.62959 5.69168 5.77006 6.17685 6.20425 6.40320 6.61630 7.08450 7.12123 7.75939 8.42151 9.26181 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.002764 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.767553 B =10128.774982 C =10877.866156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.580 5.580 4 C 0.556 3.444 5 O -0.553 6.553 6 C 0.102 3.898 7 C -0.157 4.157 8 C -0.034 4.034 9 C -0.160 4.160 10 C 0.303 3.697 11 O -0.303 6.303 12 C 0.052 3.948 13 C -0.153 4.153 14 C -0.165 4.165 15 N -0.506 5.506 16 C 0.149 3.851 17 H 0.114 0.886 18 C -0.134 4.134 19 C 0.196 3.804 20 N -0.622 5.622 21 C -0.242 4.242 22 H 0.080 0.920 23 C -0.068 4.068 24 N -0.952 5.952 25 Si 0.983 3.017 26 H -0.266 1.266 27 H -0.287 1.287 28 H -0.293 1.293 29 C 0.118 3.882 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.185 0.815 37 H 0.173 0.827 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.020 0.980 48 H -0.003 1.003 49 H 0.247 0.753 50 H 0.038 0.962 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 -21.365 18.433 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.022 4.022 3 N -0.310 5.310 4 C 0.343 3.657 5 O -0.431 6.431 6 C -0.033 4.033 7 C -0.179 4.179 8 C -0.059 4.059 9 C -0.181 4.181 10 C 0.122 3.878 11 O -0.210 6.210 12 C -0.003 4.003 13 C -0.210 4.210 14 C -0.223 4.223 15 N -0.234 5.234 16 C 0.044 3.956 17 H 0.132 0.868 18 C -0.173 4.173 19 C 0.071 3.929 20 N -0.349 5.349 21 C -0.370 4.370 22 H 0.098 0.902 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.811 3.189 26 H -0.190 1.190 27 H -0.213 1.213 28 H -0.220 1.220 29 C -0.008 4.008 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.159 0.841 36 H 0.202 0.798 37 H 0.190 0.810 38 H 0.120 0.880 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.074 0.926 47 H 0.038 0.962 48 H 0.015 0.985 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.580 -21.300 17.671 30.001 hybrid contribution 0.792 1.498 -0.242 1.711 sum -10.788 -19.803 17.429 28.501 Atomic orbital electron populations 1.22334 0.95068 1.03139 1.00874 1.22334 0.95586 0.79966 1.04326 1.47870 1.63045 1.15255 1.04809 1.18424 0.78732 0.84720 0.83776 1.90812 1.44756 1.21202 1.86351 1.20562 0.98607 0.90517 0.93655 1.22106 1.01369 1.02110 0.92283 1.21809 0.91799 0.93392 0.98914 1.21678 1.03320 0.95541 0.97561 1.20262 0.90990 0.86255 0.90280 1.86328 1.76649 1.23993 1.34076 1.23011 0.99029 0.94923 0.83336 1.21994 1.01508 0.93387 1.04085 1.22264 0.94879 1.02508 1.02600 1.67602 1.15140 1.11103 1.29555 1.22169 0.94052 0.93957 0.85413 0.86845 1.22979 0.98333 0.96321 0.99642 1.20756 0.82861 0.94025 0.95259 1.44629 1.03387 1.40128 1.46770 1.19490 0.86792 1.14123 1.16638 0.90234 1.25703 1.00029 0.99495 1.00866 1.70209 1.22429 1.29912 1.37593 0.84941 0.78684 0.77503 0.77772 1.19037 1.21348 1.22018 1.22088 0.95323 0.90127 0.93279 0.89041 0.93415 0.93752 0.89781 0.86950 0.84115 0.79775 0.80956 0.88010 0.91408 0.88856 0.92509 0.89057 0.91546 0.92917 0.89828 0.92617 0.96152 0.98470 0.94366 0.94401 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 7.62 71.98 0.55 -2.47 16 2 C 0.10 2.20 5.26 86.38 0.45 2.65 16 3 N -0.58 -18.11 2.57 -793.17 -2.04 -20.15 16 4 C 0.56 19.10 6.88 86.88 0.60 19.69 16 5 O -0.55 -23.85 12.40 -3.75 -0.05 -23.90 16 6 C 0.10 2.73 6.42 41.85 0.27 2.99 16 7 C -0.16 -3.54 9.63 22.62 0.22 -3.32 16 8 C -0.03 -0.49 10.16 22.42 0.23 -0.26 16 9 C -0.16 -2.28 10.05 22.54 0.23 -2.05 16 10 C 0.30 5.68 7.49 84.92 0.64 6.31 16 11 O -0.30 -5.14 9.76 -89.90 -0.88 -6.01 16 12 C 0.05 0.71 3.02 30.59 0.09 0.80 16 13 C -0.15 -1.53 9.56 71.98 0.69 -0.85 16 14 C -0.17 -1.86 7.73 71.98 0.56 -1.30 16 15 N -0.51 -11.14 2.97 -298.18 -0.88 -12.03 16 16 C 0.15 5.59 3.55 46.38 0.16 5.76 16 17 H 0.11 3.83 7.79 -2.39 -0.02 3.81 16 18 C -0.13 -5.66 6.34 31.78 0.20 -5.46 16 19 C 0.20 10.73 5.37 86.73 0.47 11.19 16 20 N -0.62 -35.33 3.39 -692.01 -2.35 -37.68 16 21 C -0.24 -14.60 10.28 84.03 0.86 -13.73 16 22 H 0.08 4.62 7.83 -2.91 -0.02 4.60 16 23 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 24 N -0.95 -60.34 10.31 21.65 0.22 -60.12 16 25 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 28 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 29 C 0.12 5.55 6.58 86.86 0.57 6.12 16 30 H 0.09 1.26 4.70 -2.39 -0.01 1.25 16 31 H 0.05 1.07 6.10 -2.38 -0.01 1.05 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.61 7.82 -2.38 -0.02 1.59 16 34 H 0.11 2.42 4.22 -2.39 -0.01 2.41 16 35 H 0.14 3.42 7.63 -2.91 -0.02 3.40 16 36 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.10 1.54 2.77 -2.39 -0.01 1.54 16 39 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.71 7.74 -2.39 -0.02 0.69 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.05 0.73 7.07 -2.39 -0.02 0.72 16 45 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.06 2.51 6.44 -2.39 -0.02 2.49 16 47 H 0.02 1.19 7.38 -2.39 -0.02 1.17 16 48 H 0.00 -0.19 7.51 -2.39 -0.02 -0.20 16 49 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 50 H 0.04 1.96 5.34 -2.38 -0.01 1.95 16 51 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -78.33 385.46 4.24 -74.09 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.94 Total: 13.25 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 7.25 Total: 22.43 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -5.05 Total: -129.98 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.92 Total: -29.91 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -78.33 4.24 -74.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034004128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.413 kcal (2) G-P(sol) polarization free energy of solvation -78.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds