Wall clock time and date at job start Wed Apr 1 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47092 * 2 1 4 4 C 1.34783 * 120.00220 * 270.83273 * 3 2 1 5 5 O 1.21493 * 120.00053 * 185.50194 * 4 3 2 6 6 C 1.48323 * 119.99758 * 5.50277 * 4 3 2 7 7 N 1.31503 * 127.15687 * 5.93988 * 6 4 3 8 8 O 1.21426 * 111.52673 * 179.97438 * 7 6 4 9 9 C 1.33186 * 111.57320 * 359.95731 * 8 7 6 10 10 C 1.35376 * 106.63063 * 359.84452 * 9 8 7 11 11 C 1.50068 * 124.93662 * 180.02562 * 10 9 8 12 12 C 1.53547 * 108.22767 * 344.07777 * 11 10 9 13 13 H 1.08996 * 109.46761 * 289.19621 * 12 11 10 14 14 C 1.53001 * 109.46489 * 169.20871 * 12 11 10 15 15 C 1.53111 * 109.50347 * 49.20891 * 12 11 10 16 16 C 1.50604 * 129.60625 * 180.19771 * 9 8 7 17 17 C 1.46501 * 119.99989 * 90.83250 * 3 2 1 18 18 H 1.09008 * 110.91488 * 172.35705 * 17 3 2 19 19 C 1.55151 * 111.00547 * 48.45976 * 17 3 2 20 20 C 1.54329 * 102.94000 * 277.42497 * 19 17 3 21 21 N 1.47282 * 107.30536 * 337.81812 * 20 19 17 22 22 C 1.36945 * 125.79270 * 178.92309 * 21 20 19 23 23 H 1.07995 * 119.99654 * 185.36341 * 22 21 20 24 24 C 1.38808 * 119.99987 * 5.36318 * 22 21 20 25 25 N 1.31622 * 119.99786 * 5.59429 * 24 22 21 26 26 Si 1.86798 * 119.99987 * 185.59193 * 24 22 21 27 27 H 1.48504 * 109.47185 * 85.00258 * 26 24 22 28 28 H 1.48505 * 109.46947 * 204.99590 * 26 24 22 29 29 H 1.48496 * 109.47186 * 324.99471 * 26 24 22 30 30 C 1.47423 * 108.55925 * 358.92359 * 21 20 19 31 31 H 1.09000 * 109.47138 * 299.99647 * 1 2 3 32 32 H 1.08995 * 109.47273 * 59.99893 * 1 2 3 33 33 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47138 * 240.00353 * 2 1 3 35 35 H 1.09003 * 109.47277 * 119.99791 * 2 1 3 36 36 H 1.09003 * 109.71043 * 103.76153 * 11 10 9 37 37 H 1.09002 * 109.71079 * 224.39587 * 11 10 9 38 38 H 1.09000 * 109.46893 * 60.00154 * 14 12 11 39 39 H 1.08997 * 109.47205 * 179.97438 * 14 12 11 40 40 H 1.08995 * 109.47448 * 300.00139 * 14 12 11 41 41 H 1.08993 * 109.42617 * 50.21704 * 15 12 11 42 42 H 1.08998 * 109.42586 * 170.11418 * 15 12 11 43 43 H 1.08998 * 109.69525 * 282.93448 * 16 9 8 44 44 H 1.09004 * 109.69261 * 43.52022 * 16 9 8 45 45 H 1.08995 * 110.72287 * 35.78538 * 19 17 3 46 46 H 1.08997 * 110.72428 * 158.88706 * 19 17 3 47 47 H 1.09002 * 109.88147 * 97.22528 * 20 19 17 48 48 H 1.09000 * 109.88352 * 218.23341 * 20 19 17 49 49 H 0.97002 * 120.00012 * 180.02562 * 25 24 22 50 50 H 1.09000 * 110.36362 * 265.25891 * 30 21 20 51 51 H 1.09005 * 110.36886 * 143.05073 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2269 2.0223 -1.1671 5 8 2.7256 3.1302 -1.1710 6 6 1.8478 1.3752 -2.4467 7 7 1.2058 0.2380 -2.6021 8 8 1.0434 -0.0251 -3.7764 9 6 1.5618 0.9147 -4.5650 10 6 2.0956 1.8539 -3.7493 11 6 2.7888 3.1015 -4.2131 12 6 3.1377 2.9329 -5.6989 13 1 3.9378 2.2002 -5.8033 14 6 3.5982 4.2756 -6.2700 15 6 1.9014 2.4508 -6.4628 16 6 1.5865 1.0000 -6.0684 17 6 2.2798 2.0657 1.2686 18 1 2.7614 3.0288 1.0991 19 6 3.1304 1.1776 2.2146 20 6 2.0766 0.2552 2.8631 21 7 0.7732 0.9316 2.7496 22 6 -0.4269 0.4359 3.1849 23 1 -1.3404 0.9731 2.9768 24 6 -0.4692 -0.7568 3.8936 25 7 0.6501 -1.3549 4.2428 26 14 -2.1146 -1.5132 4.3517 27 1 -2.6149 -2.3334 3.2193 28 1 -1.9472 -2.3739 5.5502 29 1 -3.0898 -0.4337 4.6500 30 6 0.9761 2.2334 2.0881 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.1274 3.9586 -4.0857 37 1 3.7012 3.2514 -3.6359 38 1 4.4786 4.6187 -5.7266 39 1 3.8464 4.1559 -7.3246 40 1 2.7983 5.0085 -6.1655 41 1 1.0527 3.0897 -6.2190 42 1 2.0957 2.4992 -7.5343 43 1 2.3505 0.3295 -6.4619 44 1 0.6114 0.7216 -6.4683 45 1 3.8562 0.5949 1.6475 46 1 3.6306 1.7857 2.9684 47 1 2.0456 -0.6991 2.3373 48 1 2.3221 0.0923 3.9125 49 1 0.6206 -2.1886 4.7377 50 1 1.0938 3.0221 2.8312 51 1 0.1388 2.4577 1.4273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034005297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:25 Heat of formation + Delta-G solvation = 66.564391 kcal Electronic energy + Delta-G solvation = -32631.544995 eV Core-core repulsion = 28535.584664 eV Total energy + Delta-G solvation = -4095.960331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.06478 -39.91337 -38.42821 -37.50993 -34.71954 -33.76402 -32.63758 -32.26641 -30.44178 -30.12001 -29.03685 -27.60195 -27.18573 -24.89813 -24.23942 -23.79409 -22.45130 -22.10575 -20.71559 -20.13516 -19.78626 -18.53106 -17.83873 -17.21717 -16.92602 -16.76232 -15.82215 -15.28427 -14.82704 -14.65189 -14.54175 -14.30743 -14.07441 -13.80450 -13.59054 -13.53653 -13.24911 -12.98290 -12.68044 -12.58151 -12.38955 -12.06370 -12.02229 -11.91357 -11.79417 -11.34071 -11.20864 -11.05814 -10.97414 -10.87020 -10.84351 -10.76752 -10.70452 -10.47663 -10.24093 -10.16067 -10.07665 -9.91594 -9.66222 -9.48108 -9.11476 -8.59032 -8.21359 -6.80054 -5.73927 -3.08120 1.20463 1.67502 2.82762 3.16364 3.35411 3.39039 3.44793 3.45486 4.04913 4.29349 4.38006 4.43489 4.47968 4.75923 4.77607 4.92606 5.05530 5.12322 5.23699 5.35298 5.36194 5.42140 5.44686 5.47212 5.52209 5.53057 5.60258 5.70328 5.71500 5.72011 5.78940 5.84522 5.94012 6.07271 6.09805 6.13456 6.16080 6.26847 6.34271 6.44655 6.49975 6.63261 6.67699 6.75987 7.07207 7.33920 7.46606 7.59183 7.72675 7.81417 8.05732 8.21434 8.36149 9.17498 9.78290 10.44319 11.36850 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019170 B = 0.003007 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.274524 B = 9309.178383 C =10217.010019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.094 3.906 3 N -0.567 5.567 4 C 0.591 3.409 5 O -0.539 6.539 6 C -0.012 4.012 7 N -0.316 5.316 8 O 0.120 5.880 9 C -0.047 4.047 10 C -0.153 4.153 11 C -0.037 4.037 12 C -0.096 4.096 13 H 0.075 0.925 14 C -0.146 4.146 15 C -0.113 4.113 16 C -0.033 4.033 17 C 0.122 3.878 18 H 0.101 0.899 19 C -0.155 4.155 20 C 0.170 3.830 21 N -0.598 5.598 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.004 4.004 25 N -0.919 5.919 26 Si 0.907 3.093 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.125 3.875 31 H 0.099 0.901 32 H 0.031 0.969 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.058 0.942 49 H 0.252 0.748 50 H 0.031 0.969 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 6.168 -21.975 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.028 4.028 3 N -0.298 5.298 4 C 0.377 3.623 5 O -0.416 6.416 6 C -0.170 4.170 7 N -0.019 5.019 8 O 0.048 5.952 9 C -0.111 4.111 10 C -0.158 4.158 11 C -0.074 4.074 12 C -0.114 4.114 13 H 0.093 0.907 14 C -0.203 4.203 15 C -0.151 4.151 16 C -0.071 4.071 17 C 0.019 3.981 18 H 0.119 0.881 19 C -0.194 4.194 20 C 0.046 3.954 21 N -0.325 5.325 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.201 4.201 25 N -0.566 5.566 26 Si 0.738 3.262 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.208 1.208 30 C -0.002 4.002 31 H 0.118 0.882 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.063 0.937 50 H 0.048 0.952 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.475 5.681 -20.893 22.333 hybrid contribution -0.674 -0.114 0.096 0.690 sum 4.801 5.567 -20.797 22.058 Atomic orbital electron populations 1.22222 0.94798 1.02157 1.02685 1.22179 0.96358 0.80609 1.03639 1.47791 1.62385 1.14984 1.04595 1.16957 0.78953 0.84712 0.81666 1.90720 1.44982 1.19415 1.86496 1.23037 1.03442 0.94275 0.96229 1.74955 1.15763 1.15682 0.95490 1.84739 1.57827 1.40871 1.11743 1.24079 1.00361 0.90206 0.96498 1.20609 1.04710 1.00244 0.90247 1.20020 1.00309 0.92562 0.94511 1.21323 0.97643 0.98228 0.94255 0.90676 1.21801 1.01555 0.96354 1.00611 1.21756 0.98684 0.94216 1.00437 1.20255 1.03958 0.98784 0.84146 1.22355 0.97689 0.96074 0.82021 0.88117 1.23241 0.98655 0.99370 0.98105 1.21393 0.82474 0.92280 0.99303 1.44529 1.04160 1.14779 1.69011 1.18896 0.83902 1.03901 1.28395 0.90601 1.24743 0.96917 0.98377 1.00018 1.69937 1.24262 1.19107 1.43317 0.86211 0.83195 0.79118 0.77703 1.21526 1.21768 1.20819 1.21930 0.94371 0.90087 0.93806 0.88225 0.94955 0.92780 0.91323 0.87451 0.89903 0.89479 0.92271 0.92474 0.92395 0.90967 0.90160 0.88831 0.89035 0.91836 0.90877 0.94015 0.92381 0.93743 0.95150 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.42 37.16 0.35 -2.89 16 2 C 0.09 1.80 4.83 -4.04 -0.02 1.78 16 3 N -0.57 -10.66 2.53 -164.60 -0.42 -11.08 16 4 C 0.59 10.95 7.69 -12.11 -0.09 10.86 16 5 O -0.54 -10.58 15.58 5.37 0.08 -10.49 16 6 C -0.01 -0.20 6.73 -82.82 -0.56 -0.76 16 7 N -0.32 -5.11 7.38 33.29 0.25 -4.86 16 8 O 0.12 1.65 11.18 19.20 0.21 1.86 16 9 C -0.05 -0.53 7.38 -35.38 -0.26 -0.79 16 10 C -0.15 -2.04 6.04 -104.91 -0.63 -2.67 16 11 C -0.04 -0.40 4.95 -27.90 -0.14 -0.54 16 12 C -0.10 -0.72 2.70 -90.28 -0.24 -0.96 16 13 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 14 C -0.15 -0.91 9.16 37.16 0.34 -0.57 16 15 C -0.11 -0.69 5.19 -26.36 -0.14 -0.83 16 16 C -0.03 -0.22 6.31 -27.61 -0.17 -0.40 16 17 C 0.12 2.31 3.66 -65.79 -0.24 2.07 16 18 H 0.10 1.84 7.04 -51.92 -0.37 1.48 16 19 C -0.15 -2.89 6.15 -24.90 -0.15 -3.04 16 20 C 0.17 3.90 4.37 -2.92 -0.01 3.88 16 21 N -0.60 -14.34 2.06 -169.86 -0.35 -14.69 16 22 C -0.22 -5.89 8.46 -15.06 -0.13 -6.01 16 23 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 24 C 0.00 -0.11 5.46 -17.43 -0.10 -0.20 16 25 N -0.92 -25.91 10.44 55.49 0.58 -25.33 16 26 Si 0.91 21.75 29.56 -169.99 -5.02 16.72 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 C 0.12 2.61 6.00 -2.53 -0.02 2.60 16 31 H 0.10 2.26 3.43 -51.93 -0.18 2.08 16 32 H 0.03 0.62 6.85 -51.93 -0.36 0.27 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.26 5.62 -51.93 -0.29 0.97 16 35 H 0.11 2.26 3.82 -51.93 -0.20 2.07 16 36 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 37 H 0.09 1.07 7.95 -51.93 -0.41 0.65 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.08 0.33 8.11 -51.93 -0.42 -0.09 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.04 1.04 5.48 -51.93 -0.28 0.75 16 48 H 0.06 1.51 7.09 -51.93 -0.37 1.14 16 49 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 50 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.04 0.92 7.46 -51.93 -0.39 0.53 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -29.99 381.19 -9.01 -39.01 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.88 Total: 1.61 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.21 Total: 1.51 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.06 Total: -55.96 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.30 Total: -8.63 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.99 -9.01 -39.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034005297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.570 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds