Wall clock time and date at job start Wed Apr 1 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47092 * 2 1 4 4 C 1.34783 * 120.00220 * 270.83273 * 3 2 1 5 5 O 1.21493 * 120.00053 * 185.50194 * 4 3 2 6 6 C 1.48323 * 119.99758 * 5.50277 * 4 3 2 7 7 N 1.31503 * 127.15687 * 5.93988 * 6 4 3 8 8 O 1.21426 * 111.52673 * 179.97438 * 7 6 4 9 9 C 1.33186 * 111.57320 * 359.95731 * 8 7 6 10 10 C 1.35376 * 106.63063 * 359.84452 * 9 8 7 11 11 C 1.50068 * 124.93662 * 180.02562 * 10 9 8 12 12 C 1.53547 * 108.22767 * 344.07777 * 11 10 9 13 13 H 1.08996 * 109.46761 * 289.19621 * 12 11 10 14 14 C 1.53001 * 109.46489 * 169.20871 * 12 11 10 15 15 C 1.53111 * 109.50347 * 49.20891 * 12 11 10 16 16 C 1.50604 * 129.60625 * 180.19771 * 9 8 7 17 17 C 1.46501 * 119.99989 * 90.83250 * 3 2 1 18 18 H 1.09008 * 110.91488 * 172.35705 * 17 3 2 19 19 C 1.55151 * 111.00547 * 48.45976 * 17 3 2 20 20 C 1.54329 * 102.94000 * 277.42497 * 19 17 3 21 21 N 1.47282 * 107.30536 * 337.81812 * 20 19 17 22 22 C 1.36945 * 125.79270 * 178.92309 * 21 20 19 23 23 H 1.07995 * 119.99654 * 185.36341 * 22 21 20 24 24 C 1.38808 * 119.99987 * 5.36318 * 22 21 20 25 25 N 1.31622 * 119.99786 * 5.59429 * 24 22 21 26 26 Si 1.86798 * 119.99987 * 185.59193 * 24 22 21 27 27 H 1.48504 * 109.47185 * 85.00258 * 26 24 22 28 28 H 1.48505 * 109.46947 * 204.99590 * 26 24 22 29 29 H 1.48496 * 109.47186 * 324.99471 * 26 24 22 30 30 C 1.47423 * 108.55925 * 358.92359 * 21 20 19 31 31 H 1.09000 * 109.47138 * 299.99647 * 1 2 3 32 32 H 1.08995 * 109.47273 * 59.99893 * 1 2 3 33 33 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47138 * 240.00353 * 2 1 3 35 35 H 1.09003 * 109.47277 * 119.99791 * 2 1 3 36 36 H 1.09003 * 109.71043 * 103.76153 * 11 10 9 37 37 H 1.09002 * 109.71079 * 224.39587 * 11 10 9 38 38 H 1.09000 * 109.46893 * 60.00154 * 14 12 11 39 39 H 1.08997 * 109.47205 * 179.97438 * 14 12 11 40 40 H 1.08995 * 109.47448 * 300.00139 * 14 12 11 41 41 H 1.08993 * 109.42617 * 50.21704 * 15 12 11 42 42 H 1.08998 * 109.42586 * 170.11418 * 15 12 11 43 43 H 1.08998 * 109.69525 * 282.93448 * 16 9 8 44 44 H 1.09004 * 109.69261 * 43.52022 * 16 9 8 45 45 H 1.08995 * 110.72287 * 35.78538 * 19 17 3 46 46 H 1.08997 * 110.72428 * 158.88706 * 19 17 3 47 47 H 1.09002 * 109.88147 * 97.22528 * 20 19 17 48 48 H 1.09000 * 109.88352 * 218.23341 * 20 19 17 49 49 H 0.97002 * 120.00012 * 180.02562 * 25 24 22 50 50 H 1.09000 * 110.36362 * 265.25891 * 30 21 20 51 51 H 1.09005 * 110.36886 * 143.05073 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2269 2.0223 -1.1671 5 8 2.7256 3.1302 -1.1710 6 6 1.8478 1.3752 -2.4467 7 7 1.2058 0.2380 -2.6021 8 8 1.0434 -0.0251 -3.7764 9 6 1.5618 0.9147 -4.5650 10 6 2.0956 1.8539 -3.7493 11 6 2.7888 3.1015 -4.2131 12 6 3.1377 2.9329 -5.6989 13 1 3.9378 2.2002 -5.8033 14 6 3.5982 4.2756 -6.2700 15 6 1.9014 2.4508 -6.4628 16 6 1.5865 1.0000 -6.0684 17 6 2.2798 2.0657 1.2686 18 1 2.7614 3.0288 1.0991 19 6 3.1304 1.1776 2.2146 20 6 2.0766 0.2552 2.8631 21 7 0.7732 0.9316 2.7496 22 6 -0.4269 0.4359 3.1849 23 1 -1.3404 0.9731 2.9768 24 6 -0.4692 -0.7568 3.8936 25 7 0.6501 -1.3549 4.2428 26 14 -2.1146 -1.5132 4.3517 27 1 -2.6149 -2.3334 3.2193 28 1 -1.9472 -2.3739 5.5502 29 1 -3.0898 -0.4337 4.6500 30 6 0.9761 2.2334 2.0881 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.1274 3.9586 -4.0857 37 1 3.7012 3.2514 -3.6359 38 1 4.4786 4.6187 -5.7266 39 1 3.8464 4.1559 -7.3246 40 1 2.7983 5.0085 -6.1655 41 1 1.0527 3.0897 -6.2190 42 1 2.0957 2.4992 -7.5343 43 1 2.3505 0.3295 -6.4619 44 1 0.6114 0.7216 -6.4683 45 1 3.8562 0.5949 1.6475 46 1 3.6306 1.7857 2.9684 47 1 2.0456 -0.6991 2.3373 48 1 2.3221 0.0923 3.9125 49 1 0.6206 -2.1886 4.7377 50 1 1.0938 3.0221 2.8312 51 1 0.1388 2.4577 1.4273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034005297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:24 Heat of formation + Delta-G solvation = 51.921077 kcal Electronic energy + Delta-G solvation = -32632.179977 eV Core-core repulsion = 28535.584664 eV Total energy + Delta-G solvation = -4096.595313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -46.18029 -41.45438 -39.35249 -38.91612 -36.32054 -35.04987 -34.05568 -33.34276 -31.95034 -31.21701 -30.78423 -29.16976 -28.12514 -26.62836 -25.67352 -24.52466 -24.02082 -22.99324 -22.09530 -21.98189 -20.71300 -19.86220 -19.00416 -18.93012 -18.28303 -18.11687 -17.27413 -16.65528 -16.27597 -16.06858 -15.80416 -15.66063 -15.19088 -14.98237 -14.69602 -14.52900 -14.31406 -14.30005 -13.90168 -13.89742 -13.72952 -13.69708 -13.43963 -13.01395 -12.94489 -12.80769 -12.63246 -12.53460 -12.39610 -12.21645 -12.13344 -12.05515 -11.92204 -11.85882 -11.70124 -11.62110 -11.53817 -11.37307 -11.24225 -11.04466 -10.56948 -10.06822 -9.81672 -8.78603 -7.81610 -5.16309 0.03515 0.64135 1.46197 1.47216 1.54164 1.66933 1.96175 2.01984 2.49863 2.81212 3.36459 3.40103 3.59580 3.62519 3.75423 3.87703 3.94621 3.97269 4.02936 4.11812 4.22448 4.24645 4.28474 4.45476 4.47562 4.55304 4.56221 4.63663 4.70265 4.76243 4.79552 4.80676 4.89307 4.89663 4.97085 4.98950 5.00814 5.03994 5.10105 5.15337 5.20781 5.34791 5.42387 5.45698 5.50991 5.54167 5.61482 5.66899 5.80241 6.21014 6.24243 6.79389 7.07188 7.11960 7.77432 8.42969 9.27598 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019170 B = 0.003007 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.274524 B = 9309.178383 C =10217.010019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.108 3.892 3 N -0.572 5.572 4 C 0.591 3.409 5 O -0.553 6.553 6 C -0.041 4.041 7 N -0.341 5.341 8 O 0.127 5.873 9 C -0.026 4.026 10 C -0.169 4.169 11 C -0.035 4.035 12 C -0.091 4.091 13 H 0.079 0.921 14 C -0.144 4.144 15 C -0.110 4.110 16 C -0.033 4.033 17 C 0.131 3.869 18 H 0.114 0.886 19 C -0.139 4.139 20 C 0.181 3.819 21 N -0.608 5.608 22 C -0.223 4.223 23 H 0.074 0.926 24 C -0.054 4.054 25 N -0.944 5.944 26 Si 0.964 3.036 27 H -0.288 1.288 28 H -0.297 1.297 29 H -0.275 1.275 30 C 0.126 3.874 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.020 0.980 48 H 0.024 0.976 49 H 0.246 0.754 50 H 0.040 0.960 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 6.706 -25.231 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 N -0.302 5.302 4 C 0.378 3.622 5 O -0.432 6.432 6 C -0.197 4.197 7 N -0.043 5.043 8 O 0.053 5.947 9 C -0.090 4.090 10 C -0.175 4.175 11 C -0.073 4.073 12 C -0.109 4.109 13 H 0.098 0.902 14 C -0.201 4.201 15 C -0.147 4.147 16 C -0.071 4.071 17 C 0.027 3.973 18 H 0.131 0.869 19 C -0.178 4.178 20 C 0.056 3.944 21 N -0.335 5.335 22 C -0.351 4.351 23 H 0.092 0.908 24 C -0.248 4.248 25 N -0.593 5.593 26 Si 0.793 3.207 27 H -0.215 1.215 28 H -0.223 1.223 29 H -0.200 1.200 30 C 0.000 4.000 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.095 0.905 46 H 0.111 0.889 47 H 0.038 0.962 48 H 0.042 0.958 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.580 6.253 -24.151 25.564 hybrid contribution -0.721 -0.229 0.999 1.253 sum 4.859 6.024 -23.152 24.411 Atomic orbital electron populations 1.22043 0.95564 1.01359 1.01582 1.21939 0.95486 0.80900 1.03105 1.47791 1.62767 1.14788 1.04867 1.17228 0.78276 0.84526 0.82167 1.90697 1.45573 1.20009 1.86888 1.22975 1.05065 0.95241 0.96427 1.74897 1.16600 1.15940 0.96889 1.84696 1.57424 1.41295 1.11296 1.24944 0.97638 0.88212 0.98233 1.20915 1.05679 1.01655 0.89245 1.20063 0.98921 0.91344 0.96954 1.21312 0.98640 0.99183 0.91766 0.90238 1.21789 1.01163 0.95554 1.01599 1.21798 0.97542 0.93427 1.01965 1.20632 1.06150 0.99862 0.80428 1.22264 0.96432 0.96648 0.81956 0.86863 1.23114 0.97589 0.98746 0.98311 1.21149 0.83322 0.92568 0.97337 1.44658 1.03929 1.15973 1.68918 1.19101 0.84836 1.03787 1.27422 0.90809 1.25393 0.99570 0.99062 1.00755 1.70122 1.25742 1.19139 1.44270 0.85311 0.80152 0.78258 0.76938 1.21468 1.22334 1.19991 1.22004 0.95250 0.88899 0.93894 0.90664 0.94431 0.93390 0.90320 0.89317 0.90716 0.91463 0.93055 0.90474 0.92511 0.91464 0.86974 0.86325 0.86720 0.90511 0.88896 0.96191 0.95752 0.94483 0.94252 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.07 9.42 71.98 0.68 -5.39 16 2 C 0.11 4.20 4.83 86.38 0.42 4.61 16 3 N -0.57 -21.56 2.53 -792.98 -2.01 -23.57 16 4 C 0.59 21.93 7.69 86.93 0.67 22.60 16 5 O -0.55 -21.74 15.58 -3.69 -0.06 -21.80 16 6 C -0.04 -1.35 6.73 42.55 0.29 -1.06 16 7 N -0.34 -10.87 7.38 -48.95 -0.36 -11.23 16 8 O 0.13 3.28 11.18 78.73 0.88 4.15 16 9 C -0.03 -0.52 7.38 24.99 0.18 -0.34 16 10 C -0.17 -4.33 6.04 -20.05 -0.12 -4.45 16 11 C -0.04 -0.75 4.95 29.83 0.15 -0.60 16 12 C -0.09 -1.12 2.70 -10.57 -0.03 -1.15 16 13 H 0.08 0.94 8.12 -2.39 -0.02 0.92 16 14 C -0.14 -1.44 9.16 71.98 0.66 -0.78 16 15 C -0.11 -0.89 5.19 30.84 0.16 -0.73 16 16 C -0.03 -0.30 6.31 30.02 0.19 -0.12 16 17 C 0.13 4.89 3.66 46.38 0.17 5.06 16 18 H 0.11 4.02 7.04 -2.38 -0.02 4.00 16 19 C -0.14 -5.12 6.15 31.78 0.20 -4.93 16 20 C 0.18 8.51 4.37 86.68 0.38 8.89 16 21 N -0.61 -29.77 2.06 -691.32 -1.42 -31.19 16 22 C -0.22 -11.98 8.46 84.03 0.71 -11.27 16 23 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 24 C -0.05 -2.99 5.46 84.86 0.46 -2.52 16 25 N -0.94 -54.83 10.44 21.65 0.23 -54.60 16 26 Si 0.96 45.46 29.56 68.60 2.03 47.49 16 27 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 29 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 30 C 0.13 5.27 6.00 86.85 0.52 5.80 16 31 H 0.07 3.48 3.43 -2.39 -0.01 3.48 16 32 H 0.04 1.47 6.85 -2.39 -0.02 1.45 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 2.93 5.62 -2.39 -0.01 2.91 16 35 H 0.09 3.85 3.82 -2.39 -0.01 3.84 16 36 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 37 H 0.07 1.66 7.95 -2.39 -0.02 1.64 16 38 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 42 H 0.11 0.31 8.11 -2.39 -0.02 0.29 16 43 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 46 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 47 H 0.02 1.04 5.48 -2.39 -0.01 1.03 16 48 H 0.02 1.31 7.09 -2.39 -0.02 1.29 16 49 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 50 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.04 1.53 7.46 -2.38 -0.02 1.51 16 Total: -1.00 -67.07 381.19 5.91 -61.16 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.94 Total: 15.97 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.68 Total: 13.62 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -3.57 Total: -120.59 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.82 Total: -17.65 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -67.07 5.91 -61.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034005297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.079 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds