Wall clock time and date at job start Wed Apr 1 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47152 * 2 1 4 4 C 1.34776 * 119.99881 * 85.89242 * 3 2 1 5 5 O 1.21496 * 119.99418 * 185.45921 * 4 3 2 6 6 C 1.48322 * 120.00097 * 5.18153 * 4 3 2 7 7 N 1.31495 * 127.15604 * 356.61850 * 6 4 3 8 8 O 1.21435 * 111.52673 * 179.97438 * 7 6 4 9 9 C 1.33190 * 111.56591 * 0.03240 * 8 7 6 10 10 C 1.35368 * 106.63909 * 359.67688 * 9 8 7 11 11 C 1.50068 * 124.93924 * 179.83405 * 10 9 8 12 12 C 1.53543 * 108.16925 * 16.57348 * 11 10 9 13 13 H 1.09000 * 109.46676 * 70.59495 * 12 11 10 14 14 C 1.53003 * 109.45913 * 190.58223 * 12 11 10 15 15 C 1.53111 * 109.50943 * 310.58733 * 12 11 10 16 16 C 1.50605 * 129.59546 * 179.81131 * 9 8 7 17 17 C 1.46500 * 119.99746 * 265.89599 * 3 2 1 18 18 H 1.08998 * 110.64478 * 11.61535 * 17 3 2 19 19 C 1.55160 * 110.71880 * 248.27941 * 17 3 2 20 20 C 1.54907 * 101.58235 * 277.14129 * 19 17 3 21 21 N 1.47423 * 104.83222 * 322.98807 * 20 19 17 22 22 C 1.36937 * 125.64804 * 204.16515 * 21 20 19 23 23 H 1.08002 * 119.99629 * 179.97438 * 22 21 20 24 24 C 1.38805 * 120.00124 * 359.95930 * 22 21 20 25 25 N 1.31620 * 120.00329 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00131 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47242 * 89.99844 * 26 24 22 28 28 H 1.48496 * 109.47596 * 210.00234 * 26 24 22 29 29 H 1.48506 * 109.47065 * 329.99964 * 26 24 22 30 30 C 1.47029 * 108.70229 * 24.13133 * 21 20 19 31 31 H 1.08995 * 109.47307 * 300.00397 * 1 2 3 32 32 H 1.09000 * 109.46714 * 60.00442 * 1 2 3 33 33 H 1.09002 * 109.46850 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47045 * 239.99927 * 2 1 3 35 35 H 1.09000 * 109.46714 * 119.99558 * 2 1 3 36 36 H 1.08991 * 109.92066 * 256.80058 * 11 10 9 37 37 H 1.09006 * 109.59306 * 136.15189 * 11 10 9 38 38 H 1.08998 * 109.47259 * 180.02562 * 14 12 11 39 39 H 1.08997 * 109.46698 * 300.02923 * 14 12 11 40 40 H 1.08998 * 109.47177 * 60.03241 * 14 12 11 41 41 H 1.09003 * 109.42553 * 309.77905 * 15 12 11 42 42 H 1.08999 * 109.43109 * 189.93874 * 15 12 11 43 43 H 1.08997 * 109.69762 * 316.49226 * 16 9 8 44 44 H 1.08996 * 109.69643 * 77.08777 * 16 9 8 45 45 H 1.08999 * 110.99968 * 35.21618 * 19 17 3 46 46 H 1.08997 * 111.00330 * 159.06120 * 19 17 3 47 47 H 1.08998 * 110.36605 * 204.15433 * 20 19 17 48 48 H 1.09003 * 110.37064 * 81.82702 * 20 19 17 49 49 H 0.96993 * 120.00471 * 179.97438 * 25 24 22 50 50 H 1.09006 * 109.87777 * 239.52039 * 30 21 20 51 51 H 1.08992 * 109.88221 * 118.35876 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1642 2.0444 1.1642 5 8 2.4735 3.2193 1.1593 6 6 1.9410 1.3415 2.4511 7 7 1.5403 0.1004 2.6191 8 8 1.4526 -0.1840 3.7965 9 6 1.7871 0.8439 4.5746 10 6 2.1209 1.8630 3.7485 11 6 2.5612 3.2252 4.1985 12 6 2.9636 3.1340 5.6775 13 1 3.8929 2.5714 5.7671 14 6 3.1644 4.5430 6.2389 15 6 1.8593 2.4236 6.4650 16 6 1.8193 0.9396 6.0773 17 6 2.3482 2.0415 -1.2655 18 1 1.9868 1.4553 -2.1104 19 6 3.8765 2.2856 -1.3754 20 6 4.0404 3.5990 -0.5705 21 7 2.8366 4.3887 -0.8878 22 6 2.7327 5.7518 -0.8089 23 1 1.8029 6.2381 -1.0646 24 6 3.8222 6.5084 -0.4002 25 7 4.9551 5.9157 -0.0878 26 14 3.6807 8.3680 -0.2933 27 1 3.2196 8.7521 1.0651 28 1 5.0069 8.9815 -0.5578 29 1 2.7029 8.8488 -1.3023 30 6 1.7664 3.4703 -1.3037 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.7437 3.9367 4.0832 37 1 3.4161 3.5479 3.6041 38 1 3.4506 4.4785 7.2887 39 1 3.9506 5.0488 5.6784 40 1 2.2351 5.1056 6.1497 41 1 0.8980 2.8840 6.2370 42 1 2.0597 2.5141 7.5326 43 1 0.9258 0.4750 6.4942 44 1 2.7077 0.4363 6.4585 45 1 4.4362 1.4721 -0.9138 46 1 4.1764 2.4238 -2.4141 47 1 4.9372 4.1299 -0.8895 48 1 4.0839 3.3864 0.4977 49 1 5.7166 6.4444 0.1974 50 1 1.4432 3.7121 -2.3162 51 1 0.9245 3.5463 -0.6156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034005299.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:32 Heat of formation + Delta-G solvation = 87.743420 kcal Electronic energy + Delta-G solvation = -33326.581977 eV Core-core repulsion = 29231.540038 eV Total energy + Delta-G solvation = -4095.041940 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.91268 -39.92020 -38.18704 -36.32295 -35.42783 -33.58649 -32.42563 -32.12299 -30.28182 -30.01943 -28.79124 -27.33804 -26.95770 -24.74845 -24.09338 -23.60846 -22.83917 -21.90778 -20.73833 -19.94123 -19.60365 -18.22333 -17.68170 -17.00351 -16.68139 -16.39568 -15.64769 -15.12024 -14.89880 -14.45969 -14.35598 -14.04912 -13.85920 -13.68461 -13.59746 -13.32242 -13.20967 -13.13877 -12.71122 -12.32016 -12.12901 -12.06243 -11.95454 -11.84141 -11.54337 -11.46452 -11.41843 -11.00826 -10.87561 -10.80343 -10.72459 -10.69143 -10.62055 -10.50606 -10.09094 -9.97347 -9.73723 -9.57882 -9.38994 -9.12188 -8.97930 -8.49108 -7.82980 -6.46997 -5.40143 -2.76493 1.31659 1.90770 2.93764 3.26809 3.51329 3.55870 3.57471 3.69712 4.17608 4.45262 4.61128 4.63936 4.67898 4.93863 4.95403 5.08961 5.16676 5.26928 5.31691 5.37343 5.39061 5.53018 5.59363 5.61293 5.64980 5.65951 5.71520 5.72301 5.77418 5.83768 5.86705 5.87943 5.94437 6.05660 6.07472 6.09530 6.24141 6.35892 6.36534 6.39261 6.51698 6.58023 6.66962 6.79122 6.85997 7.25578 7.77971 7.82868 7.96693 8.10567 8.18310 8.60623 8.81513 9.47759 10.09310 10.76900 11.63407 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009184 B = 0.005003 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.151918 B = 5595.798933 C = 8060.548543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.598 5.598 4 C 0.551 3.449 5 O -0.422 6.422 6 C 0.003 3.997 7 N -0.342 5.342 8 O 0.107 5.893 9 C -0.047 4.047 10 C -0.147 4.147 11 C -0.041 4.041 12 C -0.094 4.094 13 H 0.073 0.927 14 C -0.146 4.146 15 C -0.114 4.114 16 C -0.031 4.031 17 C 0.136 3.864 18 H 0.085 0.915 19 C -0.161 4.161 20 C 0.155 3.845 21 N -0.577 5.577 22 C -0.201 4.201 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.906 3.094 27 H -0.293 1.293 28 H -0.293 1.293 29 H -0.284 1.284 30 C 0.139 3.861 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.094 0.906 48 H 0.041 0.959 49 H 0.246 0.754 50 H 0.022 0.978 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 -14.351 11.311 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.026 4.026 3 N -0.334 5.334 4 C 0.335 3.665 5 O -0.288 6.288 6 C -0.155 4.155 7 N -0.050 5.050 8 O 0.040 5.960 9 C -0.112 4.112 10 C -0.152 4.152 11 C -0.078 4.078 12 C -0.112 4.112 13 H 0.092 0.908 14 C -0.204 4.204 15 C -0.151 4.151 16 C -0.069 4.069 17 C 0.033 3.967 18 H 0.103 0.897 19 C -0.200 4.200 20 C 0.031 3.969 21 N -0.302 5.302 22 C -0.330 4.330 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.570 5.570 26 Si 0.738 3.262 27 H -0.220 1.220 28 H -0.220 1.220 29 H -0.210 1.210 30 C 0.012 3.988 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.112 0.888 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.039 0.961 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -6.198 -14.422 10.479 18.874 hybrid contribution -0.052 1.329 0.309 1.365 sum -6.249 -13.093 10.788 18.079 Atomic orbital electron populations 1.22087 0.96276 1.01472 1.01883 1.21827 0.94402 0.82819 1.03540 1.47680 1.66365 1.13791 1.05555 1.17063 0.81249 0.86972 0.81241 1.91212 1.39888 1.12673 1.85043 1.23438 1.03818 0.91225 0.96996 1.74602 1.18883 1.15986 0.95566 1.84649 1.63267 1.36173 1.11913 1.24025 1.03324 0.87343 0.96488 1.20698 1.05002 0.99183 0.90304 1.20070 1.02768 0.90348 0.94626 1.21296 0.98466 0.97098 0.94364 0.90816 1.21798 1.02429 0.95753 1.00391 1.21728 1.00135 0.92935 1.00315 1.20202 1.03860 0.98666 0.84217 1.22124 0.96805 0.94233 0.83501 0.89703 1.23566 0.93684 1.01332 1.01461 1.22179 0.92263 0.86540 0.95907 1.44170 1.07560 1.01219 1.77261 1.18971 0.96886 0.80562 1.36572 0.91211 1.24642 0.96264 0.97399 1.02484 1.69830 1.02090 1.32443 1.52671 0.86183 0.76471 0.85989 0.77564 1.22032 1.21968 1.21030 1.21396 0.92823 0.88100 0.96516 0.92971 0.92762 0.92054 0.91003 0.88471 0.89803 0.88715 0.92694 0.91913 0.92440 0.91103 0.90268 0.89228 0.89050 0.92642 0.91548 0.88810 0.94132 0.94311 0.96085 0.96195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.92 37.16 0.37 -1.66 16 2 C 0.10 1.36 5.69 -4.04 -0.02 1.34 16 3 N -0.60 -10.58 2.51 -164.95 -0.41 -11.00 16 4 C 0.55 11.09 6.79 -12.11 -0.08 11.01 16 5 O -0.42 -10.24 9.51 5.37 0.05 -10.19 16 6 C 0.00 0.06 6.88 -82.82 -0.57 -0.51 16 7 N -0.34 -5.21 8.00 33.29 0.27 -4.95 16 8 O 0.11 1.44 11.18 19.19 0.21 1.66 16 9 C -0.05 -0.59 7.38 -35.38 -0.26 -0.85 16 10 C -0.15 -2.28 6.04 -104.91 -0.63 -2.91 16 11 C -0.04 -0.62 4.95 -27.91 -0.14 -0.76 16 12 C -0.09 -1.04 2.70 -90.28 -0.24 -1.28 16 13 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 14 C -0.15 -1.55 9.16 37.16 0.34 -1.21 16 15 C -0.11 -0.96 5.18 -26.45 -0.14 -1.10 16 16 C -0.03 -0.26 6.31 -27.70 -0.17 -0.43 16 17 C 0.14 2.55 3.68 -66.10 -0.24 2.31 16 18 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 19 C -0.16 -3.27 6.67 -24.58 -0.16 -3.44 16 20 C 0.16 4.03 4.90 -2.53 -0.01 4.01 16 21 N -0.58 -15.60 2.28 -170.07 -0.39 -15.99 16 22 C -0.20 -5.92 10.27 -15.06 -0.15 -6.07 16 23 H 0.07 2.02 7.83 -52.49 -0.41 1.60 16 24 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 25 N -0.92 -28.06 10.09 55.49 0.56 -27.50 16 26 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 30 C 0.14 3.15 6.01 -3.06 -0.02 3.13 16 31 H 0.05 0.76 7.70 -51.93 -0.40 0.36 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.87 7.97 -51.93 -0.41 0.45 16 35 H 0.10 1.40 5.05 -51.93 -0.26 1.14 16 36 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 37 H 0.09 1.75 7.91 -51.93 -0.41 1.34 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 42 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.09 2.74 5.87 -51.93 -0.31 2.44 16 48 H 0.04 1.16 5.26 -52.72 -0.28 0.88 16 49 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.02 0.49 7.34 -51.93 -0.38 0.10 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -33.60 387.55 -9.46 -43.06 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.32 Total: -0.18 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.24 Total: 1.09 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.02 Total: -59.43 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.27 Total: -8.53 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.60 -9.46 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034005299.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.803 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds